Wall clock time and date at job start Tue Mar 31 2020 05:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46504 * 109.46971 * 2 1 4 4 C 1.46494 * 120.00112 * 270.00254 * 3 2 1 5 5 C 1.50703 * 109.47296 * 270.00179 * 4 3 2 6 6 C 1.38635 * 119.74622 * 269.73019 * 5 4 3 7 7 C 1.37618 * 120.24859 * 179.72155 * 6 5 4 8 8 C 1.40723 * 119.74021 * 0.56861 * 7 6 5 9 9 C 1.41395 * 120.24361 * 179.68611 * 8 7 6 10 10 H 1.07997 * 119.99791 * 204.40207 * 9 8 7 11 11 C 1.39947 * 119.99890 * 24.39381 * 9 8 7 12 12 N 1.30823 * 119.99827 * 17.86927 * 11 9 8 13 13 Si 1.86800 * 120.00068 * 197.85803 * 11 9 8 14 14 H 1.48501 * 109.47109 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.46971 * 120.00111 * 13 11 9 16 16 H 1.48500 * 109.47278 * 240.00812 * 13 11 9 17 17 C 1.40716 * 119.51279 * 359.70421 * 8 7 6 18 18 C 1.37620 * 119.74289 * 359.97438 * 17 8 7 19 19 C 1.39672 * 119.99397 * 90.00402 * 3 2 1 20 20 C 1.38911 * 120.07027 * 179.72418 * 19 3 2 21 21 C 1.38109 * 119.92645 * 180.27671 * 20 19 3 22 22 C 1.38286 * 120.07181 * 359.97438 * 21 20 19 23 23 C 1.38277 * 120.15005 * 0.02562 * 22 21 20 24 24 C 1.38107 * 120.07884 * 359.97438 * 23 22 21 25 25 H 1.09000 * 109.46957 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46819 * 299.99416 * 1 2 3 27 27 H 1.09000 * 109.47260 * 59.99679 * 1 2 3 28 28 H 1.09004 * 109.46819 * 240.00584 * 2 1 3 29 29 H 1.09000 * 109.47260 * 120.00321 * 2 1 3 30 30 H 1.08999 * 109.47177 * 30.00517 * 4 3 2 31 31 H 1.09006 * 109.46917 * 149.99813 * 4 3 2 32 32 H 1.08000 * 119.87961 * 359.97305 * 6 5 4 33 33 H 1.07993 * 120.13185 * 180.27581 * 7 6 5 34 34 H 0.97005 * 119.99882 * 180.02562 * 12 11 9 35 35 H 1.07995 * 120.12613 * 179.97438 * 17 8 7 36 36 H 1.08004 * 119.87226 * 179.97438 * 18 17 8 37 37 H 1.08000 * 120.04097 * 0.25043 * 20 19 3 38 38 H 1.08000 * 119.95972 * 180.02562 * 21 20 19 39 39 H 1.08002 * 119.92144 * 179.97438 * 22 21 20 40 40 H 1.08002 * 119.96274 * 179.97438 * 23 22 21 41 41 H 1.07994 * 120.04012 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 6 4.6819 2.7130 -1.3052 7 6 5.9860 2.5035 -1.6919 8 6 6.3043 1.3998 -2.5048 9 6 7.6396 1.1781 -2.9137 10 1 7.8426 0.6128 -3.8112 11 6 8.6980 1.6915 -2.1556 12 7 8.4961 2.0618 -0.9172 13 14 10.3989 1.8477 -2.9118 14 1 10.3629 1.3642 -4.3154 15 1 10.8216 3.2710 -2.8897 16 1 11.3642 1.0323 -2.1316 17 6 5.2840 0.5186 -2.9080 18 6 3.9880 0.7441 -2.5038 19 6 2.2511 2.0395 1.2097 20 6 2.7196 3.3473 1.2115 21 6 2.9542 3.9934 2.4094 22 6 2.7228 3.3401 3.6060 23 6 2.2565 2.0383 3.6078 24 6 2.0198 1.3863 2.4135 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.5816 1.6879 -2.0283 31 1 2.0954 3.1412 -1.1383 32 1 4.4344 3.5622 -0.6856 33 1 6.7612 3.1860 -1.3766 34 1 9.2297 2.4179 -0.3918 35 1 5.5172 -0.3313 -3.5322 36 1 3.2032 0.0693 -2.8124 37 1 2.9006 3.8581 0.2773 38 1 3.3180 5.0103 2.4115 39 1 2.9075 3.8476 4.5413 40 1 2.0772 1.5309 4.5441 41 1 1.6560 0.3695 2.4156 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398988132.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:40 Heat of formation + Delta-G solvation = 44.778647 kcal Electronic energy + Delta-G solvation = -21330.471162 eV Core-core repulsion = 18367.480531 eV Total energy + Delta-G solvation = -2962.990631 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.39191 -37.59977 -36.04845 -33.78134 -31.78893 -30.55140 -30.18320 -29.32744 -28.36911 -26.27811 -24.00747 -22.93520 -21.79792 -21.00460 -20.51643 -19.48677 -17.35405 -17.27040 -15.58023 -15.33970 -15.21800 -14.70099 -14.39203 -14.03050 -13.72869 -13.56666 -13.14588 -13.02776 -12.85040 -12.47954 -12.23205 -11.98963 -11.91272 -11.62658 -11.41884 -11.08426 -11.04498 -10.98034 -10.89217 -10.69913 -10.41077 -10.35812 -9.84299 -9.41108 -9.27102 -9.13316 -8.53035 -7.46700 -7.35490 -6.81608 -6.76789 -4.37143 1.82980 2.03221 2.67959 3.05358 3.06486 3.09528 3.12218 3.70540 3.91529 4.30488 4.62135 5.09216 5.19790 5.33564 5.39206 5.48866 5.51215 5.65070 5.68702 5.80997 5.83019 5.90086 5.97414 6.05354 6.15732 6.17538 6.31121 6.34003 6.38285 6.39883 6.72483 6.85309 6.93468 7.00960 7.05562 7.24262 7.29230 7.35344 7.59450 7.75239 7.82916 7.96604 8.04214 8.12686 8.28500 8.62972 8.87716 8.96134 10.16219 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018648 B = 0.004744 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.132609 B = 5900.360915 C = 6873.984045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.119 3.881 3 N -0.615 5.615 4 C 0.183 3.817 5 C -0.237 4.237 6 C -0.084 4.084 7 C -0.167 4.167 8 C 0.114 3.886 9 C -0.462 4.462 10 H 0.077 0.923 11 C 0.076 3.924 12 N -0.789 5.789 13 Si 0.906 3.094 14 H -0.260 1.260 15 H -0.271 1.271 16 H -0.274 1.274 17 C -0.229 4.229 18 C -0.077 4.077 19 C 0.233 3.767 20 C -0.194 4.194 21 C -0.074 4.074 22 C -0.193 4.193 23 C -0.077 4.077 24 C -0.208 4.208 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.117 0.883 34 H 0.280 0.720 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.124 0.876 38 H 0.114 0.886 39 H 0.110 0.890 40 H 0.112 0.888 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.768 0.396 4.545 11.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.005 4.005 3 N -0.323 5.323 4 C 0.062 3.938 5 C -0.239 4.239 6 C -0.103 4.103 7 C -0.186 4.186 8 C 0.111 3.889 9 C -0.492 4.492 10 H 0.095 0.905 11 C -0.142 4.142 12 N -0.414 5.414 13 Si 0.731 3.269 14 H -0.184 1.184 15 H -0.197 1.197 16 H -0.200 1.200 17 C -0.249 4.249 18 C -0.096 4.096 19 C 0.130 3.870 20 C -0.216 4.216 21 C -0.092 4.092 22 C -0.213 4.213 23 C -0.096 4.096 24 C -0.230 4.230 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.106 0.894 33 H 0.134 0.866 34 H 0.091 0.909 35 H 0.108 0.892 36 H 0.101 0.899 37 H 0.142 0.858 38 H 0.132 0.868 39 H 0.128 0.872 40 H 0.130 0.870 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -10.691 0.378 4.556 11.628 hybrid contribution 1.002 -0.062 -0.191 1.022 sum -9.689 0.316 4.365 10.632 Atomic orbital electron populations 1.22230 0.97010 1.01377 1.02150 1.21295 0.93090 0.83436 1.02638 1.46962 1.69622 1.12631 1.03094 1.20083 0.94143 0.95999 0.83573 1.19374 0.94256 1.01381 1.08907 1.20604 0.93467 0.97681 0.98543 1.21306 0.94567 0.99191 1.03543 1.17636 0.92570 0.89379 0.89305 1.19643 0.90448 1.30183 1.08901 0.90451 1.25923 1.01463 0.92852 0.93981 1.69846 1.34210 1.30541 1.06821 0.86295 0.81258 0.78851 0.80539 1.18386 1.19656 1.19974 1.20936 0.93359 1.01355 1.09258 1.20314 0.95410 0.95937 0.97920 1.17844 0.91979 0.91310 0.85900 1.20813 1.07568 0.94550 0.98668 1.20842 0.97207 0.99029 0.92155 1.20753 1.07138 0.95962 0.97473 1.20764 0.97369 0.94586 0.96835 1.20614 1.10655 1.00423 0.91357 0.92267 0.92594 0.92687 0.90824 0.91240 0.91889 0.91622 0.89365 0.86565 0.90877 0.89217 0.89916 0.85814 0.86763 0.87207 0.86985 0.86620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.91 10.24 37.16 0.38 -1.53 16 2 C 0.12 1.66 5.88 -4.04 -0.02 1.63 16 3 N -0.62 -10.03 2.59 -173.12 -0.45 -10.48 16 4 C 0.18 3.12 5.35 -5.20 -0.03 3.09 16 5 C -0.24 -4.98 5.49 -104.33 -0.57 -5.55 16 6 C -0.08 -1.94 9.30 -39.66 -0.37 -2.31 16 7 C -0.17 -4.34 8.70 -38.87 -0.34 -4.68 16 8 C 0.11 3.04 5.58 -106.82 -0.60 2.44 16 9 C -0.46 -12.32 9.05 -37.74 -0.34 -12.67 16 10 H 0.08 1.99 7.91 -52.49 -0.42 1.57 16 11 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 12 N -0.79 -20.65 10.95 55.55 0.61 -20.04 16 13 Si 0.91 18.70 29.60 -169.99 -5.03 13.67 16 14 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 15 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 16 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 17 C -0.23 -5.61 9.80 -38.87 -0.38 -5.99 16 18 C -0.08 -1.68 9.67 -39.66 -0.38 -2.06 16 19 C 0.23 3.94 6.55 -83.79 -0.55 3.39 16 20 C -0.19 -3.27 8.47 -39.38 -0.33 -3.60 16 21 C -0.07 -1.13 10.04 -39.61 -0.40 -1.52 16 22 C -0.19 -2.79 10.04 -39.55 -0.40 -3.18 16 23 C -0.08 -1.10 10.04 -39.62 -0.40 -1.50 16 24 C -0.21 -3.21 9.21 -39.38 -0.36 -3.58 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 1.05 8.07 -51.93 -0.42 0.63 16 29 H 0.07 0.95 6.20 -51.93 -0.32 0.63 16 30 H 0.06 0.97 8.01 -51.93 -0.42 0.55 16 31 H 0.07 1.07 6.14 -51.93 -0.32 0.75 16 32 H 0.09 1.88 5.79 -52.49 -0.30 1.57 16 33 H 0.12 3.15 6.15 -52.49 -0.32 2.83 16 34 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 35 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 36 H 0.08 1.58 8.05 -52.48 -0.42 1.15 16 37 H 0.12 2.09 4.33 -52.49 -0.23 1.86 16 38 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 39 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 40 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 41 H 0.12 1.60 6.15 -52.49 -0.32 1.28 16 LS Contribution 334.75 15.07 5.04 5.04 Total: -1.00 -27.92 334.75 -10.59 -38.51 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -5.58 Total: 9.08 kcal Atomic # 6 Polarization: -30.60 SS G_CDS: -5.18 Total: -35.78 kcal Atomic # 7 Polarization: -30.69 SS G_CDS: 0.16 Total: -30.53 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -27.92 -10.59 -38.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398988132.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.286 kcal (2) G-P(sol) polarization free energy of solvation -27.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds