Wall clock time and date at job start Tue Mar 31 2020 05:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38125 * 120.04100 * 2 1 4 4 C 1.38263 * 120.07638 * 179.97438 * 3 2 1 5 5 C 1.38301 * 120.14820 * 359.97037 * 4 3 2 6 6 C 1.38078 * 120.07927 * 0.02562 * 5 4 3 7 7 C 1.38894 * 120.03545 * 180.22618 * 2 1 3 8 8 N 1.39672 * 120.07871 * 0.02562 * 7 2 1 9 9 C 1.46898 * 111.00284 * 244.23252 * 8 7 2 10 10 C 1.46895 * 111.00268 * 120.27327 * 8 7 2 11 11 C 1.50698 * 109.47249 * 190.00515 * 10 8 7 12 12 C 1.38637 * 119.74577 * 269.72836 * 11 10 8 13 13 C 1.37621 * 120.24653 * 179.72310 * 12 11 10 14 14 C 1.40714 * 119.74609 * 0.56731 * 13 12 11 15 15 C 1.41388 * 120.24473 * 179.68110 * 14 13 12 16 16 H 1.08006 * 120.00087 * 24.41605 * 15 14 13 17 17 C 1.39950 * 120.00239 * 204.41173 * 15 14 13 18 18 N 1.30824 * 119.99680 * 17.85726 * 17 15 14 19 19 Si 1.86793 * 120.00090 * 197.85987 * 17 15 14 20 20 H 1.48495 * 109.47343 * 60.00183 * 19 17 15 21 21 H 1.48510 * 109.47062 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47214 * 299.99557 * 19 17 15 23 23 C 1.40718 * 119.51089 * 359.70869 * 14 13 12 24 24 C 1.37624 * 119.74399 * 359.97438 * 23 14 13 25 25 H 1.09000 * 109.46678 * 90.00413 * 1 2 3 26 26 H 1.08996 * 109.46884 * 210.00298 * 1 2 3 27 27 H 1.08994 * 109.46791 * 330.00646 * 1 2 3 28 28 H 1.08007 * 119.95819 * 359.97291 * 3 2 1 29 29 H 1.08000 * 119.92135 * 179.97438 * 4 3 2 30 30 H 1.08002 * 119.95849 * 180.02562 * 5 4 3 31 31 H 1.08002 * 120.04025 * 179.97438 * 6 5 4 32 32 H 1.09004 * 109.47087 * 59.99040 * 9 8 7 33 33 H 1.08994 * 109.47665 * 179.97438 * 9 8 7 34 34 H 1.09002 * 109.46544 * 299.99936 * 9 8 7 35 35 H 1.09004 * 109.46707 * 310.00476 * 10 8 7 36 36 H 1.09003 * 109.46980 * 70.00117 * 10 8 7 37 37 H 1.08002 * 119.87754 * 359.97375 * 12 11 10 38 38 H 1.08004 * 120.12575 * 180.27349 * 13 12 11 39 39 H 0.96998 * 120.00108 * 180.02562 * 18 17 15 40 40 H 1.07995 * 120.13097 * 179.97438 * 23 14 13 41 41 H 1.07995 * 119.87463 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1985 1.1957 0.0000 4 6 3.5812 1.1966 0.0005 5 6 4.2765 0.0011 0.0017 6 6 3.5916 -1.1979 0.0018 7 6 2.2023 -1.2024 -0.0047 8 7 1.5063 -2.4134 -0.0101 9 6 1.7604 -3.1721 1.2219 10 6 1.8438 -3.2094 -1.1976 11 6 0.9043 -4.3832 -1.2993 12 6 1.2354 -5.5840 -0.6906 13 6 0.3823 -6.6609 -0.7720 14 6 -0.8242 -6.5433 -1.4865 15 6 -1.7052 -7.6450 -1.5827 16 1 -1.6854 -8.4195 -0.8302 17 6 -2.6030 -7.7318 -2.6528 18 7 -2.4087 -7.0143 -3.7293 19 14 -4.0785 -8.8719 -2.5438 20 1 -4.9288 -8.4726 -1.3938 21 1 -4.8678 -8.7814 -3.7986 22 1 -3.6118 -10.2687 -2.3530 23 6 -1.1472 -5.3214 -2.1052 24 6 -0.2821 -4.2557 -2.0051 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5137 28 1 1.6585 2.1311 -0.0004 29 1 4.1193 2.1329 0.0001 30 1 5.3565 0.0053 0.0025 31 1 4.1352 -2.1311 0.0023 32 1 1.4367 -2.5866 2.0825 33 1 1.2062 -4.1101 1.1918 34 1 2.8267 -3.3821 1.3058 35 1 1.7489 -2.5897 -2.0893 36 1 2.8689 -3.5706 -1.1136 37 1 2.1643 -5.6735 -0.1470 38 1 0.6402 -7.5941 -0.2934 39 1 -3.0311 -7.0742 -4.4709 40 1 -2.0703 -5.2202 -2.6565 41 1 -0.5280 -3.3169 -2.4787 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399010009.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:28 Heat of formation + Delta-G solvation = 44.199005 kcal Electronic energy + Delta-G solvation = -21010.233660 eV Core-core repulsion = 18047.217893 eV Total energy + Delta-G solvation = -2963.015766 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -39.89789 -37.78929 -36.07874 -33.66298 -32.59078 -30.72493 -29.53748 -29.06363 -27.23096 -26.72805 -25.08850 -23.37307 -21.56836 -20.94039 -20.62146 -19.64253 -17.28820 -16.79087 -15.65018 -15.35570 -15.24680 -14.90950 -14.30044 -13.94769 -13.86914 -13.40485 -13.15080 -13.07900 -12.84471 -12.49719 -12.11655 -11.96603 -11.85493 -11.62934 -11.53810 -11.29378 -11.20417 -11.07539 -11.02070 -10.90741 -10.45613 -10.37045 -9.61183 -9.36477 -9.12966 -8.74362 -8.43142 -8.08924 -7.42779 -7.28198 -6.75793 -4.34262 1.38049 1.44290 2.75337 3.06359 3.08561 3.09014 3.18998 3.79303 3.93154 4.25082 4.70055 4.94530 4.96919 5.07982 5.35765 5.45578 5.57113 5.65892 5.70196 5.74847 5.89518 5.90745 5.94034 5.99674 6.03559 6.23109 6.32169 6.35450 6.40536 6.44542 6.53037 6.53322 6.75057 6.96750 6.97177 7.07613 7.25562 7.31454 7.40593 7.62657 7.71993 7.91309 8.06314 8.15763 8.31092 8.65545 8.90323 8.98945 10.18647 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.034736 B = 0.003491 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.876607 B = 8018.331932 C = 8376.807008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.064 4.064 3 C -0.120 4.120 4 C -0.128 4.128 5 C -0.121 4.121 6 C -0.148 4.148 7 C 0.098 3.902 8 N -0.500 5.500 9 C 0.031 3.969 10 C 0.127 3.873 11 C -0.209 4.209 12 C -0.083 4.083 13 C -0.228 4.228 14 C 0.114 3.886 15 C -0.464 4.464 16 H 0.076 0.924 17 C 0.077 3.923 18 N -0.792 5.792 19 Si 0.907 3.093 20 H -0.263 1.263 21 H -0.278 1.278 22 H -0.266 1.266 23 C -0.167 4.167 24 C -0.077 4.077 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.054 0.946 28 H 0.121 0.879 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.058 0.942 33 H 0.086 0.914 34 H 0.020 0.980 35 H 0.065 0.935 36 H 0.026 0.974 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.281 0.719 40 H 0.117 0.883 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.952 11.845 5.422 14.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.065 4.065 3 C -0.139 4.139 4 C -0.146 4.146 5 C -0.140 4.140 6 C -0.169 4.169 7 C 0.004 3.996 8 N -0.221 5.221 9 C -0.116 4.116 10 C 0.002 3.998 11 C -0.210 4.210 12 C -0.102 4.102 13 C -0.247 4.247 14 C 0.111 3.889 15 C -0.493 4.493 16 H 0.094 0.906 17 C -0.141 4.141 18 N -0.417 5.417 19 Si 0.732 3.268 20 H -0.188 1.188 21 H -0.203 1.203 22 H -0.191 1.191 23 C -0.187 4.187 24 C -0.096 4.096 25 H 0.086 0.914 26 H 0.100 0.900 27 H 0.073 0.927 28 H 0.138 0.862 29 H 0.135 0.865 30 H 0.134 0.866 31 H 0.135 0.865 32 H 0.077 0.923 33 H 0.105 0.895 34 H 0.039 0.961 35 H 0.083 0.917 36 H 0.044 0.956 37 H 0.101 0.899 38 H 0.108 0.892 39 H 0.092 0.908 40 H 0.135 0.865 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.344 11.960 5.152 14.486 hybrid contribution 0.348 -0.745 -0.077 0.826 sum 6.692 11.215 5.075 14.011 Atomic orbital electron populations 1.20650 0.90551 1.02581 1.02441 1.19913 0.96670 0.91447 0.98436 1.20981 0.94141 0.97294 1.01452 1.21059 0.94317 0.97748 1.01510 1.20950 0.99451 0.92406 1.01173 1.21717 0.95040 0.98330 1.01775 1.18904 0.90030 0.91691 0.99012 1.59776 1.56094 1.02669 1.03575 1.22432 0.98897 0.99438 0.90821 1.20778 0.95504 0.92832 0.90663 1.18793 0.98873 0.93765 1.09594 1.20344 0.97506 0.93411 0.98923 1.20922 0.96532 0.97472 1.09816 1.17609 0.90075 0.92324 0.88878 1.19570 1.15654 1.06462 1.07640 0.90559 1.25904 0.98230 0.95760 0.94230 1.69820 1.33769 1.34813 1.03327 0.86388 0.81087 0.80825 0.78538 1.18807 1.20349 1.19057 1.21303 1.00241 0.92211 1.04913 1.20478 0.94033 0.97033 0.98093 0.91368 0.89989 0.92697 0.86150 0.86468 0.86586 0.86501 0.92281 0.89495 0.96106 0.91680 0.95556 0.89929 0.89193 0.90830 0.86539 0.89554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 9.76 36.01 0.35 -1.02 16 2 C -0.06 -0.88 5.90 -104.42 -0.62 -1.50 16 3 C -0.12 -1.42 9.70 -39.61 -0.38 -1.80 16 4 C -0.13 -1.42 10.04 -39.55 -0.40 -1.82 16 5 C -0.12 -1.42 10.04 -39.62 -0.40 -1.82 16 6 C -0.15 -2.02 8.66 -39.38 -0.34 -2.36 16 7 C 0.10 1.47 4.66 -83.78 -0.39 1.08 16 8 N -0.50 -8.26 3.68 -180.33 -0.66 -8.93 16 9 C 0.03 0.48 9.04 60.06 0.54 1.02 16 10 C 0.13 2.29 4.69 -4.98 -0.02 2.27 16 11 C -0.21 -4.46 4.91 -104.33 -0.51 -4.97 16 12 C -0.08 -1.81 7.87 -39.66 -0.31 -2.13 16 13 C -0.23 -5.53 9.80 -38.87 -0.38 -5.91 16 14 C 0.11 3.01 5.57 -106.83 -0.60 2.42 16 15 C -0.46 -12.29 9.05 -37.74 -0.34 -12.63 16 16 H 0.08 1.94 7.91 -52.48 -0.41 1.53 16 17 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 18 N -0.79 -20.45 10.95 55.55 0.61 -19.84 16 19 Si 0.91 18.63 29.59 -169.99 -5.03 13.60 16 20 H -0.26 -5.38 7.11 56.52 0.40 -4.97 16 21 H -0.28 -5.57 7.11 56.52 0.40 -5.16 16 22 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 23 C -0.17 -4.33 8.70 -38.87 -0.34 -4.67 16 24 C -0.08 -1.80 9.67 -39.66 -0.38 -2.18 16 25 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.08 1.20 7.47 -51.93 -0.39 0.81 16 27 H 0.05 0.59 8.09 -51.93 -0.42 0.17 16 28 H 0.12 1.15 8.06 -52.48 -0.42 0.72 16 29 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 30 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 31 H 0.12 1.54 7.14 -52.49 -0.37 1.17 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.09 1.50 5.90 -51.93 -0.31 1.19 16 34 H 0.02 0.30 7.34 -51.93 -0.38 -0.08 16 35 H 0.06 1.18 8.00 -51.93 -0.42 0.77 16 36 H 0.03 0.45 7.41 -51.93 -0.38 0.07 16 37 H 0.08 1.60 7.99 -52.49 -0.42 1.18 16 38 H 0.09 2.07 8.06 -52.48 -0.42 1.65 16 39 H 0.28 6.61 8.30 -40.82 -0.34 6.28 16 40 H 0.12 3.13 6.16 -52.49 -0.32 2.80 16 41 H 0.09 1.87 8.06 -52.49 -0.42 1.44 16 LS Contribution 337.00 15.07 5.08 5.08 Total: -1.00 -27.03 337.00 -10.54 -37.57 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -5.92 Total: 6.71 kcal Atomic # 6 Polarization: -29.58 SS G_CDS: -4.61 Total: -34.19 kcal Atomic # 7 Polarization: -28.71 SS G_CDS: -0.05 Total: -28.77 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -27.03 -10.54 -37.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399010009.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.767 kcal (2) G-P(sol) polarization free energy of solvation -27.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds