Wall clock time and date at job start Tue Mar 31 2020 05:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46977 * 2 1 4 4 C 1.53000 * 109.46786 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.46980 * 304.99719 * 4 3 2 6 6 N 1.46906 * 109.47281 * 64.99922 * 4 3 2 7 7 C 1.46901 * 110.99793 * 205.00148 * 6 4 3 8 8 C 1.53000 * 109.46769 * 180.02562 * 7 6 4 9 9 C 1.53002 * 109.47233 * 299.99531 * 8 7 6 10 10 C 1.52996 * 109.47328 * 60.00000 * 8 7 6 11 11 C 1.50706 * 109.46735 * 180.02562 * 8 7 6 12 12 H 1.07996 * 119.99928 * 359.97438 * 11 8 7 13 13 C 1.37880 * 119.99611 * 179.97438 * 11 8 7 14 14 N 1.31511 * 120.00327 * 359.97438 * 13 11 8 15 15 Si 1.86803 * 119.99743 * 179.97438 * 13 11 8 16 16 H 1.48500 * 109.46999 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46979 * 120.00025 * 15 13 11 18 18 H 1.48498 * 109.46942 * 239.99938 * 15 13 11 19 19 C 1.50694 * 109.46992 * 184.99921 * 4 3 2 20 20 C 1.38423 * 122.54161 * 100.00216 * 19 4 3 21 21 C 1.33392 * 114.92210 * 179.97438 * 20 19 4 22 22 S 1.75883 * 109.59419 * 359.97438 * 21 20 19 23 23 C 1.33392 * 122.54150 * 279.70491 * 19 4 3 24 24 H 1.09000 * 109.47198 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46870 * 300.00171 * 1 2 3 26 26 H 1.08999 * 109.46976 * 60.00021 * 1 2 3 27 27 H 1.09001 * 109.46870 * 239.99829 * 2 1 3 28 28 H 1.08999 * 109.46976 * 119.99979 * 2 1 3 29 29 H 1.08996 * 109.47160 * 59.99819 * 3 2 1 30 30 H 1.09003 * 109.46780 * 299.99869 * 3 2 1 31 31 H 1.00899 * 110.99995 * 81.04546 * 6 4 3 32 32 H 1.09002 * 109.47401 * 59.99808 * 7 6 4 33 33 H 1.09001 * 109.46874 * 299.99821 * 7 6 4 34 34 H 1.09000 * 109.46986 * 60.00203 * 9 8 7 35 35 H 1.08993 * 109.47662 * 180.02562 * 9 8 7 36 36 H 1.09002 * 109.47075 * 300.00932 * 9 8 7 37 37 H 1.08992 * 109.47554 * 59.99639 * 10 8 7 38 38 H 1.09004 * 109.47108 * 179.97438 * 10 8 7 39 39 H 1.09000 * 109.46870 * 299.99783 * 10 8 7 40 40 H 0.97000 * 120.00354 * 180.02562 * 14 13 11 41 41 H 1.08000 * 122.53897 * 359.94733 * 20 19 4 42 42 H 1.07999 * 125.20271 * 179.97438 * 21 20 19 43 43 H 1.08007 * 125.20128 * 0.03456 * 23 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8529 0.8410 6 7 4.0592 0.8573 -1.2562 7 6 5.4066 0.2973 -1.0861 8 6 5.8812 -0.3010 -2.4119 9 6 4.9193 -1.4092 -2.8448 10 6 5.9146 0.7922 -3.4818 11 6 7.2633 -0.8761 -2.2373 12 1 7.7540 -0.8200 -1.2769 13 6 7.9010 -1.4737 -3.3037 14 7 7.3031 -1.5424 -4.4730 15 14 9.6143 -2.1859 -3.0874 16 1 10.0616 -1.9826 -1.6861 17 1 9.5884 -3.6391 -3.3924 18 1 10.5546 -1.5028 -4.0118 19 6 4.0724 2.8578 0.1232 20 6 4.5122 3.3895 1.3231 21 6 4.9245 4.6565 1.2591 22 16 4.7649 5.2460 -0.3904 23 6 4.1324 3.6914 -0.9165 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 4.0412 1.5360 -2.0026 32 1 5.3830 -0.4812 -0.3235 33 1 6.0920 1.0869 -0.7782 34 1 3.9195 -0.9937 -2.9710 35 1 5.2576 -1.8357 -3.7891 36 1 4.8955 -2.1880 -2.0825 37 1 6.5998 1.5816 -3.1735 38 1 6.2532 0.3660 -4.4263 39 1 4.9148 1.2077 -3.6080 40 1 7.7516 -1.9632 -5.2231 41 1 4.5205 2.8217 2.2418 42 1 5.2989 5.2323 2.0925 43 1 3.8363 3.4493 -1.9265 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414158943.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:00 Heat of formation + Delta-G solvation = 13.390680 kcal Electronic energy + Delta-G solvation = -20611.850767 eV Core-core repulsion = 17782.943003 eV Total energy + Delta-G solvation = -2828.907764 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.07644 -36.44506 -35.08962 -32.99860 -31.06462 -29.04194 -27.98749 -25.54540 -25.19109 -24.63124 -23.76024 -21.70555 -20.45222 -18.55469 -18.46349 -17.63343 -15.99669 -15.50569 -15.00629 -14.79005 -14.19760 -13.89691 -13.48046 -13.15642 -12.88708 -12.79939 -12.75306 -12.38097 -12.25925 -11.99488 -11.70324 -11.38299 -11.20497 -10.96975 -10.92057 -10.85869 -10.65046 -10.49955 -10.44127 -10.31173 -10.13476 -10.03512 -9.36587 -9.03483 -8.71671 -8.58978 -8.28324 -8.25436 -7.69419 -5.88955 -3.98815 1.10072 1.75220 2.06854 2.81305 3.31650 3.40026 3.43731 4.45782 4.80286 4.90854 5.10474 5.26050 5.30205 5.36726 5.40894 5.49838 5.56853 5.72449 5.87302 5.94761 6.02590 6.08770 6.18034 6.28388 6.39927 6.43548 6.48030 6.51107 6.62264 6.73830 6.75479 6.93693 7.10111 7.19977 7.40682 7.50627 7.76980 7.78838 7.86221 8.00237 8.24018 8.37798 8.59159 9.02839 9.66097 11.11557 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.014404 B = 0.005309 C = 0.004279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.447204 B = 5273.132835 C = 6541.999826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.095 4.095 4 C 0.141 3.859 5 H 0.081 0.919 6 N -0.672 5.672 7 C 0.077 3.923 8 C 0.069 3.931 9 C -0.118 4.118 10 C -0.131 4.131 11 C -0.504 4.504 12 H 0.051 0.949 13 C 0.065 3.935 14 N -0.885 5.885 15 Si 0.886 3.114 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.286 1.286 19 C -0.122 4.122 20 C -0.124 4.124 21 C -0.217 4.217 22 S 0.081 5.919 23 C -0.203 4.203 24 H 0.049 0.951 25 H 0.045 0.955 26 H 0.050 0.950 27 H 0.081 0.919 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.336 0.664 32 H 0.055 0.945 33 H 0.013 0.987 34 H 0.020 0.980 35 H 0.073 0.927 36 H 0.017 0.983 37 H 0.018 0.982 38 H 0.082 0.918 39 H 0.008 0.992 40 H 0.257 0.743 41 H 0.137 0.863 42 H 0.160 0.840 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.759 9.906 9.061 16.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.134 4.134 4 C 0.028 3.972 5 H 0.099 0.901 6 N -0.303 5.303 7 C -0.052 4.052 8 C 0.069 3.931 9 C -0.176 4.176 10 C -0.188 4.188 11 C -0.542 4.542 12 H 0.070 0.930 13 C -0.136 4.136 14 N -0.524 5.524 15 Si 0.715 3.285 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.212 1.212 19 C -0.135 4.135 20 C -0.155 4.155 21 C -0.352 4.352 22 S 0.344 5.656 23 C -0.339 4.339 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.100 0.900 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.157 0.843 32 H 0.073 0.927 33 H 0.032 0.968 34 H 0.039 0.961 35 H 0.092 0.908 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.101 0.899 39 H 0.027 0.973 40 H 0.067 0.933 41 H 0.155 0.845 42 H 0.178 0.822 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -9.718 10.619 8.241 16.587 hybrid contribution 1.401 -0.799 0.893 1.844 sum -8.317 9.819 9.135 15.781 Atomic orbital electron populations 1.21784 0.96890 1.01081 1.01043 1.21434 0.94318 0.96701 1.03088 1.21520 0.93585 0.97168 1.01103 1.20436 0.94737 0.87224 0.94847 0.90131 1.60834 1.27135 1.37869 1.04465 1.22151 0.85794 0.96576 1.00637 1.18083 0.93951 0.92206 0.88879 1.21634 0.96075 0.98114 1.01789 1.21820 0.95834 0.97628 1.03564 1.21149 1.00255 1.36701 0.96142 0.93048 1.24876 0.97414 0.95953 0.95325 1.69840 1.37049 1.44599 1.00914 0.86629 0.85030 0.78818 0.78036 1.19984 1.21125 1.21200 1.19936 1.01743 0.99343 0.92525 1.20122 1.01545 0.94886 0.98962 1.25539 1.09895 0.99822 0.99980 1.84152 1.63734 1.14821 1.02870 1.25338 1.08955 0.96361 1.03225 0.93143 0.93555 0.93057 0.89996 0.92791 0.92648 0.92201 0.84299 0.92688 0.96845 0.96116 0.90839 0.96337 0.96286 0.89891 0.97275 0.93301 0.84515 0.82239 0.82010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.91 37.16 0.37 -1.26 16 2 C -0.12 -1.49 5.82 -26.73 -0.16 -1.65 16 3 C -0.10 -1.20 4.87 -26.73 -0.13 -1.33 16 4 C 0.14 2.03 2.31 -68.86 -0.16 1.87 16 5 H 0.08 1.20 7.74 -51.93 -0.40 0.79 16 6 N -0.67 -11.50 4.90 -107.95 -0.53 -12.03 16 7 C 0.08 1.59 4.38 -3.82 -0.02 1.57 16 8 C 0.07 1.66 0.57 -155.66 -0.09 1.58 16 9 C -0.12 -2.85 8.09 37.16 0.30 -2.55 16 10 C -0.13 -3.08 7.92 37.16 0.29 -2.79 16 11 C -0.50 -13.60 8.01 -34.44 -0.28 -13.88 16 12 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 13 C 0.06 1.77 5.15 -17.82 -0.09 1.68 16 14 N -0.88 -24.56 9.35 55.43 0.52 -24.04 16 15 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 C -0.12 -1.70 4.62 -106.25 -0.49 -2.19 16 20 C -0.12 -1.58 9.95 -41.21 -0.41 -1.99 16 21 C -0.22 -2.55 11.23 29.04 0.33 -2.23 16 22 S 0.08 0.99 23.34 -107.50 -2.51 -1.52 16 23 C -0.20 -2.80 10.22 29.04 0.30 -2.51 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.08 1.22 7.75 -51.93 -0.40 0.81 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.34 5.80 4.75 -39.29 -0.19 5.61 16 32 H 0.05 1.17 8.06 -51.93 -0.42 0.75 16 33 H 0.01 0.29 8.00 -51.93 -0.42 -0.13 16 34 H 0.02 0.45 7.60 -51.93 -0.39 0.05 16 35 H 0.07 1.96 6.07 -51.93 -0.32 1.64 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.08 2.18 6.07 -51.93 -0.32 1.86 16 39 H 0.01 0.18 6.57 -51.93 -0.34 -0.16 16 40 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 41 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 42 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 43 H 0.16 2.17 6.97 -52.48 -0.37 1.80 16 LS Contribution 348.39 15.07 5.25 5.25 Total: -1.00 -27.16 348.39 -9.85 -37.01 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -7.33 Total: 4.77 kcal Atomic # 6 Polarization: -25.44 SS G_CDS: -0.23 Total: -25.68 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: -0.01 Total: -36.07 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -2.51 Total: -1.52 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -27.16 -9.85 -37.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414158943.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.402 kcal (2) G-P(sol) polarization free energy of solvation -27.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds