Wall clock time and date at job start Tue Mar 31 2020 05:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47250 * 2 1 4 4 C 1.53004 * 109.47277 * 185.18867 * 3 2 1 5 5 H 1.09004 * 109.46812 * 54.63621 * 4 3 2 6 6 N 1.46892 * 109.47268 * 294.63881 * 4 3 2 7 7 C 1.46900 * 111.00284 * 157.74996 * 6 4 3 8 8 C 1.53001 * 109.47261 * 174.50093 * 7 6 4 9 9 C 1.52999 * 109.47064 * 300.00280 * 8 7 6 10 10 C 1.53007 * 109.47109 * 60.00481 * 8 7 6 11 11 C 1.50693 * 109.47052 * 180.02562 * 8 7 6 12 12 H 1.08010 * 120.00360 * 0.02562 * 11 8 7 13 13 C 1.37885 * 120.00236 * 180.02562 * 11 8 7 14 14 N 1.31514 * 119.99738 * 359.97438 * 13 11 8 15 15 Si 1.86802 * 120.00060 * 180.02562 * 13 11 8 16 16 H 1.48501 * 109.47079 * 90.00123 * 15 13 11 17 17 H 1.48505 * 109.46629 * 209.99860 * 15 13 11 18 18 H 1.48502 * 109.47187 * 329.99734 * 15 13 11 19 19 C 1.50696 * 109.47185 * 174.63481 * 4 3 2 20 20 C 1.38424 * 122.54083 * 259.74190 * 19 4 3 21 21 C 1.33396 * 114.91924 * 179.76017 * 20 19 4 22 22 S 1.75883 * 109.59257 * 0.47348 * 21 20 19 23 23 C 1.33386 * 122.53720 * 80.02276 * 19 4 3 24 24 H 1.09002 * 109.46987 * 299.99888 * 1 2 3 25 25 H 1.08992 * 109.46986 * 60.00133 * 1 2 3 26 26 H 1.09001 * 109.47119 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46987 * 240.00112 * 2 1 3 28 28 H 1.09003 * 109.47216 * 120.00286 * 2 1 3 29 29 H 1.09005 * 109.46797 * 65.18974 * 3 2 1 30 30 H 1.08999 * 109.46909 * 305.18814 * 3 2 1 31 31 H 1.00907 * 111.00196 * 33.79694 * 6 4 3 32 32 H 1.09000 * 109.47476 * 294.50364 * 7 6 4 33 33 H 1.09008 * 109.46698 * 54.50559 * 7 6 4 34 34 H 1.08997 * 109.47342 * 60.00171 * 9 8 7 35 35 H 1.09000 * 109.46628 * 180.02562 * 9 8 7 36 36 H 1.08995 * 109.47258 * 299.99864 * 9 8 7 37 37 H 1.08995 * 109.46919 * 59.99336 * 10 8 7 38 38 H 1.09000 * 109.47077 * 180.02562 * 10 8 7 39 39 H 1.09001 * 109.46846 * 300.00112 * 10 8 7 40 40 H 0.96998 * 119.99910 * 180.02562 * 14 13 11 41 41 H 1.08000 * 122.53828 * 359.97438 * 20 19 4 42 42 H 1.07999 * 125.20241 * 180.20584 * 21 20 19 43 43 H 1.08001 * 125.20691 * 359.97438 * 23 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5645 1.4445 -0.1305 5 1 3.8542 0.8757 -1.0140 6 7 4.1590 0.8301 1.0640 7 6 5.5127 0.3340 0.7826 8 6 6.1497 -0.1729 2.0781 9 6 6.2261 0.9715 3.0907 10 6 5.3003 -1.3078 2.6540 11 6 7.5387 -0.6812 1.7894 12 1 7.9284 -0.6457 0.7827 13 6 8.3122 -1.1915 2.8105 14 7 7.8379 -1.2341 4.0364 15 14 10.0342 -1.8208 2.4527 16 1 11.0085 -0.7103 2.6040 17 1 10.3715 -2.9085 3.4059 18 1 10.0915 -2.3440 1.0641 19 6 4.0555 2.8630 -0.2629 20 6 4.3961 3.4222 -1.4825 21 6 4.8073 4.6899 -1.4244 22 16 4.7896 5.2396 0.2462 23 6 4.1999 3.6732 0.7868 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.7545 1.9288 0.9329 30 1 1.6028 1.9824 -0.8399 31 1 3.5708 0.0925 1.4221 32 1 5.4584 -0.4812 0.0612 33 1 6.1179 1.1426 0.3724 34 1 5.2216 1.3395 3.2996 35 1 6.6803 0.6103 4.0134 36 1 6.8312 1.7799 2.6804 37 1 5.2459 -2.1230 1.9325 38 1 5.7539 -1.6686 3.5771 39 1 4.2958 -0.9398 2.8628 40 1 8.3821 -1.5928 4.7547 41 1 4.3305 2.8747 -2.4112 42 1 5.1093 5.2860 -2.2728 43 1 3.9869 3.4081 1.8119 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414158945.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:02 Heat of formation + Delta-G solvation = 14.081173 kcal Electronic energy + Delta-G solvation = -20623.375593 eV Core-core repulsion = 17794.497771 eV Total energy + Delta-G solvation = -2828.877822 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.88505 -36.49302 -35.26410 -32.93007 -31.03652 -29.10697 -27.87322 -25.51699 -25.17565 -24.63187 -23.69126 -21.96134 -20.43801 -18.42568 -18.28388 -17.41426 -15.93349 -15.28271 -15.19096 -15.01410 -14.45550 -13.92998 -13.50050 -13.07401 -12.83891 -12.67995 -12.55299 -12.36392 -12.15829 -11.94839 -11.81876 -11.55809 -11.19141 -11.03380 -10.97013 -10.90434 -10.66033 -10.56181 -10.43804 -10.33903 -10.12175 -10.01225 -9.34172 -9.02886 -8.58666 -8.49302 -8.25371 -8.11041 -7.68656 -5.87864 -3.97741 1.31765 1.93418 2.25933 2.98821 3.33307 3.40071 3.43084 4.46051 4.70265 4.94979 5.05741 5.09817 5.25660 5.37666 5.43441 5.56051 5.62542 5.72337 5.75038 5.86312 5.95725 5.99112 6.11639 6.26806 6.29075 6.37018 6.39869 6.51940 6.67479 6.77753 6.80334 6.95512 7.13422 7.21952 7.42319 7.52406 7.79008 7.79831 7.87519 8.02978 8.26442 8.39042 8.60555 9.03775 9.66993 11.12551 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.014272 B = 0.005398 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.381202 B = 5185.482727 C = 6477.498432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.130 4.130 3 C -0.112 4.112 4 C 0.145 3.855 5 H 0.044 0.956 6 N -0.679 5.679 7 C 0.079 3.921 8 C 0.071 3.929 9 C -0.116 4.116 10 C -0.131 4.131 11 C -0.505 4.505 12 H 0.050 0.950 13 C 0.065 3.935 14 N -0.885 5.885 15 Si 0.887 3.113 16 H -0.282 1.282 17 H -0.288 1.288 18 H -0.276 1.276 19 C -0.097 4.097 20 C -0.125 4.125 21 C -0.223 4.223 22 S 0.063 5.937 23 C -0.160 4.160 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.339 0.661 32 H 0.011 0.989 33 H 0.055 0.945 34 H 0.019 0.981 35 H 0.072 0.928 36 H 0.016 0.984 37 H 0.017 0.983 38 H 0.082 0.918 39 H 0.010 0.990 40 H 0.257 0.743 41 H 0.133 0.867 42 H 0.157 0.843 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.864 7.895 -8.331 16.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.167 4.167 3 C -0.150 4.150 4 C 0.032 3.968 5 H 0.062 0.938 6 N -0.312 5.312 7 C -0.050 4.050 8 C 0.071 3.929 9 C -0.174 4.174 10 C -0.189 4.189 11 C -0.544 4.544 12 H 0.068 0.932 13 C -0.135 4.135 14 N -0.524 5.524 15 Si 0.715 3.285 16 H -0.208 1.208 17 H -0.213 1.213 18 H -0.201 1.201 19 C -0.109 4.109 20 C -0.156 4.156 21 C -0.358 4.358 22 S 0.325 5.675 23 C -0.295 4.295 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.160 0.840 32 H 0.029 0.971 33 H 0.073 0.927 34 H 0.038 0.962 35 H 0.091 0.909 36 H 0.035 0.965 37 H 0.037 0.963 38 H 0.100 0.900 39 H 0.029 0.971 40 H 0.067 0.933 41 H 0.151 0.849 42 H 0.175 0.825 43 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -11.212 9.795 -7.162 16.521 hybrid contribution 0.655 -2.439 -1.515 2.945 sum -10.557 7.356 -8.677 15.519 Atomic orbital electron populations 1.21736 0.95887 1.01393 1.01593 1.21601 0.95838 0.97059 1.02232 1.21734 0.94076 0.96643 1.02568 1.20088 0.92912 0.90409 0.93427 0.93849 1.60585 1.04754 1.37079 1.28822 1.22140 0.87400 0.96342 0.99075 1.18053 0.93082 0.92076 0.89705 1.21608 0.97291 0.96821 1.01666 1.21818 0.96100 0.98347 1.02608 1.21121 0.98937 1.40099 0.94202 0.93160 1.24873 0.97722 0.95799 0.95137 1.69835 1.36394 1.46404 0.99757 0.86689 0.85323 0.78530 0.77969 1.20822 1.21349 1.20150 1.18874 1.03097 0.97129 0.91834 1.20076 1.02083 0.94745 0.98709 1.25400 1.10872 0.99964 0.99595 1.84177 1.66398 1.15929 1.00953 1.25447 1.06016 0.94551 1.03530 0.92717 0.93026 0.92927 0.92228 0.91513 0.91052 0.91787 0.83973 0.97092 0.92655 0.96194 0.90912 0.96476 0.96347 0.89956 0.97062 0.93264 0.84923 0.82512 0.81315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 37.16 0.37 -1.05 16 2 C -0.13 -1.45 5.66 -26.73 -0.15 -1.60 16 3 C -0.11 -1.34 4.80 -26.73 -0.13 -1.47 16 4 C 0.14 2.10 2.33 -68.87 -0.16 1.94 16 5 H 0.04 0.65 7.84 -51.93 -0.41 0.25 16 6 N -0.68 -11.64 4.97 -107.95 -0.54 -12.17 16 7 C 0.08 1.64 4.36 -3.82 -0.02 1.63 16 8 C 0.07 1.72 0.57 -155.66 -0.09 1.63 16 9 C -0.12 -2.83 8.09 37.16 0.30 -2.53 16 10 C -0.13 -3.08 7.92 37.16 0.29 -2.78 16 11 C -0.50 -13.71 8.01 -34.44 -0.28 -13.98 16 12 H 0.05 1.38 7.74 -52.48 -0.41 0.97 16 13 C 0.07 1.79 5.15 -17.82 -0.09 1.69 16 14 N -0.88 -24.63 9.35 55.43 0.52 -24.12 16 15 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 19 C -0.10 -1.44 4.41 -106.25 -0.47 -1.91 16 20 C -0.12 -1.68 9.95 -41.21 -0.41 -2.09 16 21 C -0.22 -2.81 11.23 29.04 0.33 -2.48 16 22 S 0.06 0.83 23.34 -107.50 -2.51 -1.68 16 23 C -0.16 -2.41 10.52 29.04 0.31 -2.10 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.81 6.62 -51.93 -0.34 0.47 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.34 5.68 4.88 -39.29 -0.19 5.49 16 32 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.05 1.23 7.80 -51.92 -0.40 0.83 16 34 H 0.02 0.44 7.60 -51.93 -0.39 0.04 16 35 H 0.07 1.95 6.07 -51.93 -0.32 1.64 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 2.16 6.07 -51.93 -0.32 1.84 16 39 H 0.01 0.22 6.70 -51.93 -0.35 -0.13 16 40 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 41 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 42 H 0.16 1.57 8.06 -52.49 -0.42 1.15 16 43 H 0.17 2.63 8.03 -52.49 -0.42 2.21 16 LS Contribution 348.50 15.07 5.25 5.25 Total: -1.00 -27.35 348.50 -9.83 -37.17 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -7.33 Total: 4.33 kcal Atomic # 6 Polarization: -24.91 SS G_CDS: -0.20 Total: -25.10 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: -0.02 Total: -36.29 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 0.83 SS G_CDS: -2.51 Total: -1.68 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -27.35 -9.83 -37.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414158945.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.254 kcal (2) G-P(sol) polarization free energy of solvation -27.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds