Wall clock time and date at job start Tue Mar 31 2020 05:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47250 * 2 1 4 4 C 1.53004 * 109.47277 * 185.18867 * 3 2 1 5 5 H 1.09004 * 109.46812 * 54.63621 * 4 3 2 6 6 N 1.46892 * 109.47268 * 294.63881 * 4 3 2 7 7 C 1.46900 * 111.00284 * 157.74996 * 6 4 3 8 8 C 1.53001 * 109.47261 * 174.50093 * 7 6 4 9 9 C 1.52999 * 109.47064 * 300.00280 * 8 7 6 10 10 C 1.53007 * 109.47109 * 60.00481 * 8 7 6 11 11 C 1.50693 * 109.47052 * 180.02562 * 8 7 6 12 12 H 1.08010 * 120.00360 * 0.02562 * 11 8 7 13 13 C 1.37885 * 120.00236 * 180.02562 * 11 8 7 14 14 N 1.31514 * 119.99738 * 359.97438 * 13 11 8 15 15 Si 1.86802 * 120.00060 * 180.02562 * 13 11 8 16 16 H 1.48501 * 109.47079 * 90.00123 * 15 13 11 17 17 H 1.48505 * 109.46629 * 209.99860 * 15 13 11 18 18 H 1.48502 * 109.47187 * 329.99734 * 15 13 11 19 19 C 1.50696 * 109.47185 * 174.63481 * 4 3 2 20 20 C 1.38424 * 122.54083 * 259.74190 * 19 4 3 21 21 C 1.33396 * 114.91924 * 179.76017 * 20 19 4 22 22 S 1.75883 * 109.59257 * 0.47348 * 21 20 19 23 23 C 1.33386 * 122.53720 * 80.02276 * 19 4 3 24 24 H 1.09002 * 109.46987 * 299.99888 * 1 2 3 25 25 H 1.08992 * 109.46986 * 60.00133 * 1 2 3 26 26 H 1.09001 * 109.47119 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46987 * 240.00112 * 2 1 3 28 28 H 1.09003 * 109.47216 * 120.00286 * 2 1 3 29 29 H 1.09005 * 109.46797 * 65.18974 * 3 2 1 30 30 H 1.08999 * 109.46909 * 305.18814 * 3 2 1 31 31 H 1.00907 * 111.00196 * 33.79694 * 6 4 3 32 32 H 1.09000 * 109.47476 * 294.50364 * 7 6 4 33 33 H 1.09008 * 109.46698 * 54.50559 * 7 6 4 34 34 H 1.08997 * 109.47342 * 60.00171 * 9 8 7 35 35 H 1.09000 * 109.46628 * 180.02562 * 9 8 7 36 36 H 1.08995 * 109.47258 * 299.99864 * 9 8 7 37 37 H 1.08995 * 109.46919 * 59.99336 * 10 8 7 38 38 H 1.09000 * 109.47077 * 180.02562 * 10 8 7 39 39 H 1.09001 * 109.46846 * 300.00112 * 10 8 7 40 40 H 0.96998 * 119.99910 * 180.02562 * 14 13 11 41 41 H 1.08000 * 122.53828 * 359.97438 * 20 19 4 42 42 H 1.07999 * 125.20241 * 180.20584 * 21 20 19 43 43 H 1.08001 * 125.20691 * 359.97438 * 23 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5645 1.4445 -0.1305 5 1 3.8542 0.8757 -1.0140 6 7 4.1590 0.8301 1.0640 7 6 5.5127 0.3340 0.7826 8 6 6.1497 -0.1729 2.0781 9 6 6.2261 0.9715 3.0907 10 6 5.3003 -1.3078 2.6540 11 6 7.5387 -0.6812 1.7894 12 1 7.9284 -0.6457 0.7827 13 6 8.3122 -1.1915 2.8105 14 7 7.8379 -1.2341 4.0364 15 14 10.0342 -1.8208 2.4527 16 1 11.0085 -0.7103 2.6040 17 1 10.3715 -2.9085 3.4059 18 1 10.0915 -2.3440 1.0641 19 6 4.0555 2.8630 -0.2629 20 6 4.3961 3.4222 -1.4825 21 6 4.8073 4.6899 -1.4244 22 16 4.7896 5.2396 0.2462 23 6 4.1999 3.6732 0.7868 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.7545 1.9288 0.9329 30 1 1.6028 1.9824 -0.8399 31 1 3.5708 0.0925 1.4221 32 1 5.4584 -0.4812 0.0612 33 1 6.1179 1.1426 0.3724 34 1 5.2216 1.3395 3.2996 35 1 6.6803 0.6103 4.0134 36 1 6.8312 1.7799 2.6804 37 1 5.2459 -2.1230 1.9325 38 1 5.7539 -1.6686 3.5771 39 1 4.2958 -0.9398 2.8628 40 1 8.3821 -1.5928 4.7547 41 1 4.3305 2.8747 -2.4112 42 1 5.1093 5.2860 -2.2728 43 1 3.9869 3.4081 1.8119 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414158945.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:02 Heat of formation + Delta-G solvation = 1.440954 kcal Electronic energy + Delta-G solvation = -20623.923714 eV Core-core repulsion = 17794.497771 eV Total energy + Delta-G solvation = -2829.425943 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.08380 -38.07058 -36.51384 -34.40173 -32.71270 -30.38156 -28.97862 -27.46858 -27.22979 -25.66043 -25.35896 -22.96221 -21.47070 -20.31496 -19.40395 -18.48156 -17.86658 -16.92423 -16.41481 -16.21894 -15.99396 -15.09992 -14.94299 -14.55573 -14.25822 -14.02881 -13.70537 -13.69169 -13.36437 -13.28925 -13.10961 -12.95331 -12.86128 -12.69052 -12.51460 -12.33254 -12.11449 -12.04184 -11.98686 -11.85726 -11.48177 -11.38312 -11.26049 -10.87584 -10.57944 -10.32972 -9.55946 -9.18244 -9.13542 -7.95690 -6.12126 0.25349 0.89191 1.19870 1.41151 1.43330 1.51426 1.90579 2.46607 3.26224 3.42648 3.94627 4.09260 4.15737 4.29560 4.43183 4.47526 4.57428 4.63693 4.72751 4.81070 4.84667 4.89527 4.91713 4.97481 5.06636 5.09423 5.21129 5.25969 5.31233 5.33911 5.37428 5.46219 5.49659 5.53482 5.60428 5.69962 5.71953 5.80219 6.22466 6.31945 6.38230 6.52747 6.72010 6.97885 7.55128 9.02202 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.014272 B = 0.005398 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.381202 B = 5185.482727 C = 6477.498432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.128 4.128 3 C -0.102 4.102 4 C 0.145 3.855 5 H 0.042 0.958 6 N -0.677 5.677 7 C 0.099 3.901 8 C 0.063 3.937 9 C -0.100 4.100 10 C -0.119 4.119 11 C -0.525 4.525 12 H 0.040 0.960 13 C 0.024 3.976 14 N -0.902 5.902 15 Si 0.941 3.059 16 H -0.281 1.281 17 H -0.284 1.284 18 H -0.274 1.274 19 C -0.104 4.104 20 C -0.141 4.141 21 C -0.214 4.214 22 S 0.072 5.928 23 C -0.185 4.185 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.343 0.657 32 H 0.005 0.995 33 H 0.039 0.961 34 H 0.035 0.965 35 H 0.046 0.954 36 H 0.004 0.996 37 H 0.016 0.984 38 H 0.054 0.946 39 H 0.034 0.966 40 H 0.257 0.743 41 H 0.150 0.850 42 H 0.185 0.815 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.635 8.356 -9.673 17.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.166 4.166 3 C -0.140 4.140 4 C 0.033 3.967 5 H 0.060 0.940 6 N -0.310 5.310 7 C -0.030 4.030 8 C 0.063 3.937 9 C -0.158 4.158 10 C -0.177 4.177 11 C -0.564 4.564 12 H 0.059 0.941 13 C -0.175 4.175 14 N -0.542 5.542 15 Si 0.768 3.232 16 H -0.207 1.207 17 H -0.209 1.209 18 H -0.198 1.198 19 C -0.116 4.116 20 C -0.172 4.172 21 C -0.349 4.349 22 S 0.334 5.666 23 C -0.321 4.321 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.164 0.836 32 H 0.023 0.977 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.023 0.977 37 H 0.035 0.965 38 H 0.073 0.927 39 H 0.053 0.947 40 H 0.066 0.934 41 H 0.167 0.833 42 H 0.203 0.797 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -11.995 10.262 -8.507 17.932 hybrid contribution 0.886 -2.532 -1.112 2.904 sum -11.110 7.730 -9.619 16.605 Atomic orbital electron populations 1.21708 0.94413 1.02000 1.02156 1.21584 0.97126 0.96246 1.01654 1.21652 0.92036 0.97367 1.02918 1.20164 0.94475 0.90100 0.91978 0.94034 1.60475 1.03326 1.36796 1.30453 1.21717 0.89019 0.95368 0.96924 1.18098 0.92386 0.92121 0.91140 1.21413 0.97588 0.96402 1.00355 1.21637 0.96993 0.98024 1.01007 1.21435 1.00654 1.40515 0.93814 0.94143 1.25502 1.00833 0.96113 0.95093 1.69963 1.37318 1.46668 1.00207 0.85826 0.81526 0.77990 0.77852 1.20702 1.20926 1.19838 1.19033 1.03049 0.97065 0.92454 1.20263 1.02722 0.95358 0.98868 1.25785 1.09342 0.99872 0.99883 1.84119 1.65988 1.14803 1.01640 1.25445 1.07483 0.95926 1.03257 0.92557 0.92070 0.92343 0.92256 0.92640 0.91432 0.90432 0.83589 0.97672 0.94287 0.94596 0.93531 0.97716 0.96493 0.92729 0.94671 0.93366 0.83272 0.79737 0.82481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 9.91 71.98 0.71 -1.74 16 2 C -0.13 -2.66 5.66 30.59 0.17 -2.48 16 3 C -0.10 -2.27 4.80 30.60 0.15 -2.12 16 4 C 0.15 4.05 2.33 44.17 0.10 4.16 16 5 H 0.04 1.20 7.84 -2.38 -0.02 1.18 16 6 N -0.68 -22.74 4.97 -495.45 -2.46 -25.20 16 7 C 0.10 4.11 4.36 86.30 0.38 4.49 16 8 C 0.06 3.06 0.57 -52.93 -0.03 3.03 16 9 C -0.10 -4.91 8.09 71.98 0.58 -4.33 16 10 C -0.12 -5.56 7.92 71.98 0.57 -4.99 16 11 C -0.53 -28.78 8.01 25.60 0.21 -28.58 16 12 H 0.04 2.24 7.74 -2.91 -0.02 2.22 16 13 C 0.02 1.29 5.15 84.66 0.44 1.73 16 14 N -0.90 -50.77 9.35 21.45 0.20 -50.57 16 15 Si 0.94 43.90 29.54 68.60 2.03 45.93 16 16 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 17 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 18 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 19 C -0.10 -2.94 4.41 -20.92 -0.09 -3.04 16 20 C -0.14 -3.53 9.95 21.22 0.21 -3.32 16 21 C -0.21 -4.88 11.23 66.72 0.75 -4.13 16 22 S 0.07 1.81 23.34 -56.49 -1.32 0.49 16 23 C -0.19 -5.48 10.52 66.72 0.70 -4.78 16 24 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.05 1.27 6.62 -2.39 -0.02 1.25 16 29 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 30 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.34 11.12 4.88 -89.69 -0.44 10.68 16 32 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 33 H 0.04 1.74 7.80 -2.38 -0.02 1.72 16 34 H 0.04 1.60 7.60 -2.39 -0.02 1.58 16 35 H 0.05 2.53 6.07 -2.39 -0.01 2.51 16 36 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 37 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.05 2.87 6.07 -2.39 -0.01 2.86 16 39 H 0.03 1.43 6.70 -2.39 -0.02 1.41 16 40 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 41 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 42 H 0.19 3.09 8.06 -2.91 -0.02 3.06 16 43 H 0.16 4.93 8.03 -2.91 -0.02 4.90 16 Total: -1.00 -57.88 348.50 3.82 -54.06 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: 0.53 Total: 21.41 kcal Atomic # 6 Polarization: -50.96 SS G_CDS: 4.85 Total: -46.11 kcal Atomic # 7 Polarization: -73.51 SS G_CDS: -2.26 Total: -75.77 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -1.32 Total: 0.49 kcal Total: -57.88 3.82 -54.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414158945.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.498 kcal (2) G-P(sol) polarization free energy of solvation -57.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds