Wall clock time and date at job start Tue Mar 31 2020 05:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33391 * 125.20330 * 2 1 4 4 C 1.38417 * 114.92231 * 180.21173 * 3 2 1 5 5 C 1.50699 * 122.54520 * 179.76170 * 4 3 2 6 6 H 1.08998 * 109.47629 * 219.71568 * 5 4 3 7 7 C 1.52997 * 109.47156 * 99.70912 * 5 4 3 8 8 N 1.46904 * 109.46851 * 339.71361 * 5 4 3 9 9 C 1.46899 * 111.00029 * 204.99994 * 8 5 4 10 10 C 1.52997 * 109.47254 * 179.97438 * 9 8 5 11 11 C 1.53006 * 109.47127 * 300.00134 * 10 9 8 12 12 C 1.52999 * 109.47317 * 59.99645 * 10 9 8 13 13 C 1.50697 * 109.47466 * 179.97438 * 10 9 8 14 14 H 1.08001 * 119.99890 * 0.02562 * 13 10 9 15 15 C 1.37876 * 120.00428 * 179.97438 * 13 10 9 16 16 N 1.31519 * 119.99563 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 120.00432 * 179.97438 * 15 13 10 18 18 H 1.48499 * 109.46616 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47104 * 119.99966 * 17 15 13 20 20 H 1.48489 * 109.47200 * 240.00246 * 17 15 13 21 21 C 1.33393 * 114.92164 * 359.49384 * 4 3 2 22 22 C 1.50697 * 125.20479 * 180.29206 * 21 4 3 23 23 S 1.75885 * 109.59148 * 0.26930 * 21 4 3 24 24 H 1.09000 * 109.46794 * 180.28684 * 1 2 3 25 25 H 1.09003 * 109.46973 * 300.28699 * 1 2 3 26 26 H 1.08999 * 109.47235 * 60.28405 * 1 2 3 27 27 H 1.07998 * 122.53833 * 359.97012 * 3 2 1 28 28 H 1.08997 * 109.47489 * 60.00240 * 7 5 4 29 29 H 1.09007 * 109.47004 * 180.02562 * 7 5 4 30 30 H 1.09007 * 109.47280 * 300.00182 * 7 5 4 31 31 H 1.00908 * 110.99583 * 328.94906 * 8 5 4 32 32 H 1.09002 * 109.47043 * 299.99792 * 9 8 5 33 33 H 1.09001 * 109.47354 * 59.99854 * 9 8 5 34 34 H 1.08993 * 109.46955 * 60.00011 * 11 10 9 35 35 H 1.09000 * 109.47050 * 179.97438 * 11 10 9 36 36 H 1.09001 * 109.47002 * 299.99574 * 11 10 9 37 37 H 1.09002 * 109.46716 * 60.00091 * 12 10 9 38 38 H 1.09000 * 109.47486 * 180.02562 * 12 10 9 39 39 H 1.09001 * 109.47362 * 300.00732 * 12 10 9 40 40 H 0.97002 * 119.99731 * 180.02562 * 16 15 13 41 41 H 1.08997 * 109.47241 * 90.00144 * 22 21 4 42 42 H 1.08999 * 109.46933 * 209.99534 * 22 21 4 43 43 H 1.08998 * 109.47214 * 329.99583 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0900 0.0000 4 6 3.6379 0.8429 -0.0046 5 6 4.6623 1.9482 -0.0107 6 1 5.4867 1.6761 -0.6699 7 6 5.1928 2.1596 1.4087 8 7 4.0405 3.1894 -0.4910 9 6 5.0452 4.0922 -1.0686 10 6 4.3612 5.3706 -1.5572 11 6 3.3206 5.0174 -2.6219 12 6 3.6713 6.0620 -0.3795 13 6 5.3918 6.2970 -2.1492 14 1 6.4308 6.0032 -2.1749 15 6 5.0084 7.5193 -2.6591 16 7 3.7431 7.8769 -2.6283 17 14 6.2860 8.6680 -3.3923 18 1 7.6271 8.0359 -3.3066 19 1 5.9545 8.9334 -4.8153 20 1 6.2922 9.9473 -2.6385 21 6 3.9751 -0.4477 0.0023 22 6 5.3861 -0.9770 0.0055 23 16 2.5210 -1.4371 0.0077 24 1 -0.3633 -1.0277 0.0051 25 1 -0.3633 0.5183 0.8874 26 1 -0.3634 0.5094 -0.8925 27 1 1.8669 2.0895 -0.0005 28 1 5.6541 1.2387 1.7652 29 1 5.9334 2.9594 1.4044 30 1 4.3684 2.4319 2.0680 31 1 3.3067 2.9928 -1.1551 32 1 5.7867 4.3435 -0.3102 33 1 5.5363 3.5999 -1.9079 34 1 2.5753 4.3476 -2.1932 35 1 2.8331 5.9281 -2.9696 36 1 3.8121 4.5249 -3.4610 37 1 4.4126 6.3136 0.3789 38 1 3.1836 6.9725 -0.7277 39 1 2.9259 5.3921 0.0491 40 1 3.4733 8.7367 -2.9874 41 1 5.7259 -1.0992 1.0339 42 1 5.4138 -1.9406 -0.5031 43 1 6.0390 -0.2741 -0.5118 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414163420.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:48 Heat of formation + Delta-G solvation = 13.647255 kcal Electronic energy + Delta-G solvation = -20419.102466 eV Core-core repulsion = 17590.205827 eV Total energy + Delta-G solvation = -2828.896638 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.11715 -36.61660 -34.36548 -32.91687 -31.15899 -29.40504 -28.69552 -25.57614 -25.24558 -24.96996 -24.27692 -22.33745 -20.75982 -18.41671 -17.98195 -16.93489 -15.90851 -15.48030 -14.89725 -14.55255 -14.28046 -13.67234 -13.53858 -13.36896 -13.06436 -12.94153 -12.74437 -12.51584 -12.36653 -11.95117 -11.84564 -11.69975 -11.37746 -11.37429 -11.14162 -10.96984 -10.90978 -10.66994 -10.56158 -10.30215 -10.11116 -10.03154 -9.35804 -9.04921 -8.59063 -8.33879 -8.27508 -8.20941 -7.68401 -5.89412 -3.99483 1.05177 1.65744 2.01520 2.81987 3.31408 3.39809 3.43295 4.45201 4.75712 4.86875 4.89945 5.16750 5.25857 5.36211 5.37268 5.43500 5.48337 5.55934 5.71110 5.80260 5.81287 5.95431 6.01098 6.19376 6.28165 6.38099 6.41518 6.48669 6.60661 6.66240 6.75602 6.92886 7.10830 7.20075 7.41130 7.50904 7.77583 7.78687 7.86466 8.01560 8.23887 8.37214 8.58401 9.02169 9.65450 11.11108 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.027238 B = 0.003971 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.730749 B = 7050.275168 C = 7582.636030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.183 4.183 3 C -0.118 4.118 4 C -0.092 4.092 5 C 0.141 3.859 6 H 0.046 0.954 7 C -0.130 4.130 8 N -0.680 5.680 9 C 0.075 3.925 10 C 0.069 3.931 11 C -0.132 4.132 12 C -0.118 4.118 13 C -0.505 4.505 14 H 0.052 0.948 15 C 0.065 3.935 16 N -0.884 5.884 17 Si 0.887 3.113 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.285 1.285 21 C -0.184 4.184 22 C -0.080 4.080 23 S 0.068 5.932 24 H 0.062 0.938 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.149 0.851 28 H 0.047 0.953 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.339 0.661 32 H 0.057 0.943 33 H 0.012 0.988 34 H 0.010 0.990 35 H 0.083 0.917 36 H 0.018 0.982 37 H 0.017 0.983 38 H 0.073 0.927 39 H 0.020 0.980 40 H 0.257 0.743 41 H 0.072 0.928 42 H 0.064 0.936 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.886 -17.163 5.892 18.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.300 4.300 3 C -0.148 4.148 4 C -0.104 4.104 5 C 0.028 3.972 6 H 0.064 0.936 7 C -0.188 4.188 8 N -0.313 5.313 9 C -0.053 4.053 10 C 0.068 3.932 11 C -0.189 4.189 12 C -0.175 4.175 13 C -0.544 4.544 14 H 0.070 0.930 15 C -0.136 4.136 16 N -0.523 5.523 17 Si 0.716 3.284 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.211 1.211 21 C -0.301 4.301 22 C -0.138 4.138 23 S 0.333 5.667 24 H 0.081 0.919 25 H 0.094 0.906 26 H 0.095 0.905 27 H 0.167 0.833 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.160 0.840 32 H 0.075 0.925 33 H 0.030 0.970 34 H 0.029 0.971 35 H 0.102 0.898 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.092 0.908 39 H 0.039 0.961 40 H 0.067 0.933 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.286 -18.281 6.457 19.665 hybrid contribution 1.184 1.707 -1.307 2.455 sum -2.101 -16.574 5.150 17.483 Atomic orbital electron populations 1.20298 0.87996 1.02364 1.03115 1.24344 0.99645 0.95235 1.10756 1.20012 0.92270 0.99831 1.02719 1.18978 0.94933 0.93679 1.02790 1.20156 0.92763 0.87300 0.96945 0.93635 1.21714 1.00995 1.00545 0.95532 1.60750 1.14006 1.12330 1.44219 1.22198 0.93348 0.94168 0.95579 1.18090 0.93160 0.89596 0.92327 1.21829 0.98151 1.00773 0.98197 1.21626 0.98229 1.01044 0.96649 1.21148 0.93566 1.01136 1.38509 0.92997 1.24883 0.95088 0.97734 0.95879 1.69849 1.14797 1.21310 1.46393 0.86615 0.82002 0.81005 0.78803 1.19969 1.21204 1.21124 1.24108 0.98652 0.95743 1.11600 1.20317 0.90109 1.00942 1.02477 1.83985 0.97042 1.10316 1.75406 0.91881 0.90628 0.90522 0.83309 0.93350 0.92245 0.92114 0.84030 0.92467 0.96973 0.97134 0.89845 0.96280 0.96340 0.90826 0.96136 0.93294 0.90918 0.91732 0.90451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.38 36.01 0.37 -0.39 16 2 C -0.18 -2.27 6.51 -36.00 -0.23 -2.51 16 3 C -0.12 -1.67 8.88 -41.21 -0.37 -2.03 16 4 C -0.09 -1.31 4.87 -106.25 -0.52 -1.82 16 5 C 0.14 2.15 2.49 -68.86 -0.17 1.98 16 6 H 0.05 0.71 6.66 -51.93 -0.35 0.37 16 7 C -0.13 -1.84 9.40 37.16 0.35 -1.50 16 8 N -0.68 -12.17 5.01 -107.95 -0.54 -12.71 16 9 C 0.08 1.58 4.38 -3.83 -0.02 1.56 16 10 C 0.07 1.66 0.57 -155.66 -0.09 1.57 16 11 C -0.13 -3.13 7.92 37.16 0.29 -2.83 16 12 C -0.12 -2.86 8.09 37.16 0.30 -2.56 16 13 C -0.50 -13.60 8.01 -34.44 -0.28 -13.88 16 14 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 15 C 0.06 1.76 5.15 -17.82 -0.09 1.67 16 16 N -0.88 -24.51 9.35 55.43 0.52 -23.99 16 17 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 18 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 C -0.18 -2.34 6.50 -36.00 -0.23 -2.58 16 22 C -0.08 -0.82 9.79 36.00 0.35 -0.47 16 23 S 0.07 0.80 23.31 -107.50 -2.51 -1.71 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.15 2.18 7.17 -52.49 -0.38 1.80 16 28 H 0.05 0.59 7.89 -51.93 -0.41 0.18 16 29 H 0.06 0.88 7.45 -51.92 -0.39 0.49 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.34 6.15 5.21 -39.29 -0.20 5.94 16 32 H 0.06 1.21 7.44 -51.93 -0.39 0.83 16 33 H 0.01 0.26 8.06 -51.93 -0.42 -0.16 16 34 H 0.01 0.21 6.57 -51.93 -0.34 -0.13 16 35 H 0.08 2.19 6.07 -51.93 -0.32 1.88 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 1.97 6.07 -51.93 -0.32 1.65 16 39 H 0.02 0.45 7.60 -51.93 -0.39 0.06 16 40 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.08 0.81 6.85 -51.93 -0.36 0.45 16 LS Contribution 345.69 15.07 5.21 5.21 Total: -1.00 -27.53 345.69 -9.84 -37.36 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -7.17 Total: 3.49 kcal Atomic # 6 Polarization: -23.46 SS G_CDS: -0.33 Total: -23.78 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: -0.02 Total: -36.70 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 0.80 SS G_CDS: -2.51 Total: -1.71 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.53 -9.84 -37.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414163420.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.011 kcal (2) G-P(sol) polarization free energy of solvation -27.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds