Wall clock time and date at job start Tue Mar 31 2020 05:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46866 * 2 1 4 4 C 1.33387 * 125.20302 * 89.99972 * 3 2 1 5 5 C 1.38427 * 114.92248 * 179.97438 * 4 3 2 6 6 C 1.33389 * 114.91962 * 359.97438 * 5 4 3 7 7 C 1.50700 * 125.20250 * 180.02562 * 6 5 4 8 8 H 1.08997 * 109.47103 * 340.00058 * 7 6 5 9 9 C 1.53002 * 109.46909 * 100.00336 * 7 6 5 10 10 N 1.46901 * 109.47168 * 219.99982 * 7 6 5 11 11 C 1.46904 * 111.00303 * 154.99944 * 10 7 6 12 12 C 1.52995 * 109.47193 * 180.02562 * 11 10 7 13 13 C 1.52996 * 109.47243 * 299.99943 * 12 11 10 14 14 C 1.52998 * 109.47005 * 60.00305 * 12 11 10 15 15 C 1.50697 * 109.46848 * 179.97438 * 12 11 10 16 16 H 1.08002 * 120.00384 * 0.02562 * 15 12 11 17 17 C 1.37885 * 120.00192 * 179.97438 * 15 12 11 18 18 N 1.31512 * 119.99428 * 0.02562 * 17 15 12 19 19 Si 1.86795 * 120.00195 * 180.02562 * 17 15 12 20 20 H 1.48498 * 109.47147 * 60.00147 * 19 17 15 21 21 H 1.48499 * 109.46908 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47229 * 300.00226 * 19 17 15 23 23 S 1.75885 * 125.20377 * 269.69635 * 3 2 1 24 24 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46955 * 300.00219 * 1 2 3 26 26 H 1.09000 * 109.47050 * 60.00048 * 1 2 3 27 27 H 1.09000 * 109.47050 * 119.99952 * 2 1 3 28 28 H 1.09001 * 109.46801 * 240.00064 * 2 1 3 29 29 H 1.08002 * 122.54067 * 359.97438 * 4 3 2 30 30 H 1.07998 * 122.53982 * 180.02562 * 5 4 3 31 31 H 1.09005 * 109.46712 * 179.97438 * 9 7 6 32 32 H 1.08994 * 109.47061 * 299.99751 * 9 7 6 33 33 H 1.08997 * 109.47465 * 59.99943 * 9 7 6 34 34 H 1.00903 * 111.00139 * 278.95533 * 10 7 6 35 35 H 1.08997 * 109.46595 * 300.00570 * 11 10 7 36 36 H 1.09000 * 109.46406 * 60.00283 * 11 10 7 37 37 H 1.08999 * 109.46992 * 60.00146 * 13 12 11 38 38 H 1.09001 * 109.47258 * 180.02562 * 13 12 11 39 39 H 1.08994 * 109.47326 * 299.99950 * 13 12 11 40 40 H 1.08997 * 109.47521 * 60.00095 * 14 12 11 41 41 H 1.09001 * 109.46933 * 179.97438 * 14 12 11 42 42 H 1.08999 * 109.47070 * 299.99756 * 14 12 11 43 43 H 0.97000 * 119.99844 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2886 2.1458 1.0899 5 6 2.7431 3.4298 0.8429 6 6 2.8564 3.7473 -0.4477 7 6 3.3279 5.0772 -0.9770 8 1 3.2231 5.8350 -0.2007 9 6 4.7972 4.9697 -1.3899 10 7 2.5181 5.4551 -2.1429 11 6 2.5076 6.9126 -2.3265 12 6 1.6556 7.2668 -3.5470 13 6 2.2453 6.6003 -4.7914 14 6 0.2247 6.7696 -3.3317 15 6 1.6443 8.7619 -3.7349 16 1 2.1906 9.3962 -3.0523 17 6 0.9375 9.3203 -4.7788 18 7 0.2727 8.5480 -5.6102 19 14 0.9241 11.1736 -5.0121 20 1 2.3129 11.6563 -5.2205 21 1 0.0971 11.5174 -6.1966 22 1 0.3513 11.8205 -3.8044 23 16 2.3775 2.3743 -1.4372 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 2.1519 1.7603 2.0895 30 1 2.9882 4.1217 1.6350 31 1 5.1381 5.9315 -1.7732 32 1 5.3981 4.6893 -0.5249 33 1 4.9021 4.2118 -2.1662 34 1 2.8435 4.9881 -2.9760 35 1 2.0871 7.3874 -1.4400 36 1 3.5270 7.2668 -2.4794 37 1 2.2531 5.5188 -4.6552 38 1 1.6386 6.8530 -5.6610 39 1 3.2646 6.9545 -4.9448 40 1 -0.1954 7.2445 -2.4451 41 1 -0.3823 7.0223 -4.2010 42 1 0.2325 5.6882 -3.1955 43 1 -0.2248 8.9408 -6.3443 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414169496.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:36 Heat of formation + Delta-G solvation = 11.253038 kcal Electronic energy + Delta-G solvation = -20037.669759 eV Core-core repulsion = 17208.669300 eV Total energy + Delta-G solvation = -2829.000459 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.33722 -37.13400 -35.03151 -33.38820 -31.44743 -29.07133 -27.67347 -25.55361 -25.24208 -24.82663 -23.73840 -22.11826 -21.32269 -19.03677 -18.19885 -16.78945 -15.83750 -15.46465 -14.85559 -14.42118 -14.35663 -14.22831 -13.81473 -13.39840 -13.19920 -12.78284 -12.63935 -12.34163 -12.13286 -11.99282 -11.70601 -11.56272 -11.47766 -11.25211 -11.12474 -10.97336 -10.87879 -10.63313 -10.62423 -10.36253 -10.17218 -10.04036 -9.38122 -9.10089 -8.62820 -8.30311 -8.26079 -8.22164 -7.73149 -5.89894 -4.00433 1.19225 1.82118 2.26929 2.89615 3.33328 3.38239 3.40731 4.43768 4.68304 4.74082 4.95480 5.05031 5.19283 5.30822 5.35460 5.38522 5.43242 5.62356 5.70035 5.70725 5.83170 5.90780 5.93336 6.08264 6.16363 6.32233 6.33248 6.40097 6.50871 6.67659 6.72494 6.89857 7.08461 7.17856 7.40593 7.48115 7.70650 7.77013 7.83975 7.92459 8.22165 8.35778 8.56724 9.00670 9.64395 11.10547 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.028505 B = 0.003779 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.049241 B = 7408.168567 C = 7842.097395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.049 4.049 3 C -0.198 4.198 4 C -0.135 4.135 5 C -0.154 4.154 6 C -0.138 4.138 7 C 0.146 3.854 8 H 0.091 0.909 9 C -0.176 4.176 10 N -0.678 5.678 11 C 0.076 3.924 12 C 0.070 3.930 13 C -0.132 4.132 14 C -0.119 4.119 15 C -0.508 4.508 16 H 0.051 0.949 17 C 0.066 3.934 18 N -0.884 5.884 19 Si 0.889 3.111 20 H -0.279 1.279 21 H -0.288 1.288 22 H -0.278 1.278 23 S 0.125 5.875 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.131 0.869 30 H 0.133 0.867 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.338 0.662 35 H 0.057 0.943 36 H 0.016 0.984 37 H 0.010 0.990 38 H 0.083 0.917 39 H 0.018 0.982 40 H 0.017 0.983 41 H 0.074 0.926 42 H 0.020 0.980 43 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.913 -14.764 10.398 18.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.088 4.088 3 C -0.315 4.315 4 C -0.165 4.165 5 C -0.184 4.184 6 C -0.257 4.257 7 C 0.034 3.966 8 H 0.109 0.891 9 C -0.236 4.236 10 N -0.310 5.310 11 C -0.052 4.052 12 C 0.069 3.931 13 C -0.190 4.190 14 C -0.176 4.176 15 C -0.547 4.547 16 H 0.069 0.931 17 C -0.135 4.135 18 N -0.523 5.523 19 Si 0.717 3.283 20 H -0.205 1.205 21 H -0.214 1.214 22 H -0.204 1.204 23 S 0.390 5.610 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.094 0.906 28 H 0.088 0.912 29 H 0.148 0.852 30 H 0.151 0.849 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.158 0.842 35 H 0.076 0.924 36 H 0.034 0.966 37 H 0.029 0.971 38 H 0.102 0.898 39 H 0.038 0.962 40 H 0.036 0.964 41 H 0.092 0.908 42 H 0.039 0.961 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.105 -15.007 9.000 17.974 hybrid contribution 0.976 1.596 1.138 2.190 sum 5.081 -13.411 10.138 17.563 Atomic orbital electron populations 1.21794 0.94511 1.01594 1.02706 1.20019 0.96073 0.90073 1.02620 1.24500 1.09673 1.00803 0.96560 1.19919 1.03562 0.94263 0.98783 1.19940 1.05434 0.97254 0.95780 1.24609 1.05705 0.99206 0.96156 1.20023 0.90326 0.90974 0.95324 0.89145 1.22509 0.96996 1.02342 1.01714 1.60728 1.54528 1.10239 1.05512 1.22193 0.98056 0.84191 1.00718 1.18081 0.91766 0.94449 0.88803 1.21831 0.99105 0.95096 1.02927 1.21633 0.99030 0.96413 1.00563 1.21066 1.30420 0.91243 1.11925 0.93073 1.24879 0.95289 0.97492 0.95856 1.69824 1.32153 1.34122 1.16170 0.86723 0.77867 0.86250 0.77480 1.20495 1.21369 1.20414 1.84282 1.64133 1.03936 1.08669 0.92380 0.92393 0.92228 0.90567 0.91165 0.85165 0.84947 0.91761 0.92276 0.92480 0.84187 0.92450 0.96595 0.97132 0.89798 0.96242 0.96359 0.90775 0.96077 0.93141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.90 37.16 0.37 -0.98 16 2 C -0.05 -0.46 6.43 -27.88 -0.18 -0.64 16 3 C -0.20 -2.40 5.76 -36.00 -0.21 -2.61 16 4 C -0.13 -1.63 10.05 -41.21 -0.41 -2.04 16 5 C -0.15 -2.02 10.04 -41.21 -0.41 -2.43 16 6 C -0.14 -1.99 5.45 -36.00 -0.20 -2.18 16 7 C 0.15 2.19 3.02 -68.86 -0.21 1.98 16 8 H 0.09 1.36 7.78 -51.93 -0.40 0.95 16 9 C -0.18 -2.32 9.14 37.16 0.34 -1.98 16 10 N -0.68 -12.12 5.22 -107.95 -0.56 -12.68 16 11 C 0.08 1.58 4.38 -3.82 -0.02 1.56 16 12 C 0.07 1.68 0.57 -155.67 -0.09 1.59 16 13 C -0.13 -3.11 7.92 37.16 0.29 -2.82 16 14 C -0.12 -2.93 8.09 37.16 0.30 -2.63 16 15 C -0.51 -13.66 8.01 -34.44 -0.28 -13.93 16 16 H 0.05 1.37 7.74 -52.49 -0.41 0.96 16 17 C 0.07 1.79 5.15 -17.82 -0.09 1.69 16 18 N -0.88 -24.52 9.35 55.43 0.52 -24.00 16 19 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 S 0.12 1.72 23.06 -107.50 -2.48 -0.76 16 24 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 30 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16 31 H 0.06 0.87 7.45 -51.93 -0.39 0.49 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 34 H 0.34 6.06 6.51 -39.29 -0.26 5.81 16 35 H 0.06 1.22 8.05 -51.93 -0.42 0.80 16 36 H 0.02 0.32 7.43 -51.93 -0.39 -0.06 16 37 H 0.01 0.21 6.57 -51.93 -0.34 -0.13 16 38 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.07 2.00 6.07 -51.93 -0.32 1.68 16 42 H 0.02 0.48 7.60 -51.93 -0.39 0.08 16 43 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 351.39 15.07 5.30 5.30 Total: -1.00 -27.49 351.39 -10.45 -37.94 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -7.41 Total: 3.50 kcal Atomic # 6 Polarization: -24.62 SS G_CDS: -0.79 Total: -25.41 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: -0.05 Total: -36.68 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -2.48 Total: -0.76 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -27.49 -10.45 -37.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414169496.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.190 kcal (2) G-P(sol) polarization free energy of solvation -27.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds