Wall clock time and date at job start Tue Mar 31 2020 05:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50697 * 109.47239 * 2 1 4 4 C 1.33386 * 125.20563 * 89.71372 * 3 2 1 5 5 C 1.38429 * 114.91814 * 179.85823 * 4 3 2 6 6 C 1.33382 * 114.92415 * 0.43727 * 5 4 3 7 7 C 1.50701 * 125.20346 * 179.79342 * 6 5 4 8 8 H 1.08999 * 109.47128 * 19.99436 * 7 6 5 9 9 C 1.53002 * 109.46822 * 259.99603 * 7 6 5 10 10 N 1.46900 * 109.47083 * 139.99638 * 7 6 5 11 11 C 1.46905 * 111.00161 * 204.99618 * 10 7 6 12 12 C 1.52995 * 109.47228 * 180.02562 * 11 10 7 13 13 C 1.52997 * 109.47225 * 300.00230 * 12 11 10 14 14 C 1.53002 * 109.47010 * 60.00240 * 12 11 10 15 15 C 1.50702 * 109.46890 * 180.02562 * 12 11 10 16 16 H 1.07994 * 119.99806 * 359.97438 * 15 12 11 17 17 C 1.37875 * 119.99892 * 180.02562 * 15 12 11 18 18 N 1.31516 * 119.99978 * 359.97438 * 17 15 12 19 19 Si 1.86800 * 120.00120 * 179.97438 * 17 15 12 20 20 H 1.48499 * 109.47210 * 89.99739 * 19 17 15 21 21 H 1.48502 * 109.47148 * 210.00119 * 19 17 15 22 22 H 1.48499 * 109.46931 * 329.99542 * 19 17 15 23 23 S 1.75883 * 109.59202 * 359.76481 * 6 5 4 24 24 H 1.09001 * 109.47002 * 60.00070 * 1 2 3 25 25 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47050 * 300.00336 * 1 2 3 27 27 H 1.09001 * 109.46998 * 119.99373 * 2 1 3 28 28 H 1.09000 * 109.47050 * 239.99664 * 2 1 3 29 29 H 1.07996 * 122.54096 * 0.02562 * 4 3 2 30 30 H 1.08003 * 122.53429 * 180.20223 * 5 4 3 31 31 H 1.09005 * 109.47191 * 180.02562 * 9 7 6 32 32 H 1.08999 * 109.47133 * 299.99830 * 9 7 6 33 33 H 1.08994 * 109.47026 * 60.00158 * 9 7 6 34 34 H 1.00902 * 111.00041 * 81.04450 * 10 7 6 35 35 H 1.08995 * 109.47022 * 300.00298 * 11 10 7 36 36 H 1.09007 * 109.46528 * 60.00016 * 11 10 7 37 37 H 1.09005 * 109.47392 * 59.99960 * 13 12 11 38 38 H 1.08996 * 109.47017 * 180.02562 * 13 12 11 39 39 H 1.09000 * 109.46973 * 300.00032 * 13 12 11 40 40 H 1.08995 * 109.47219 * 59.99762 * 14 12 11 41 41 H 1.09007 * 109.46620 * 180.02562 * 14 12 11 42 42 H 1.09005 * 109.47002 * 299.99669 * 14 12 11 43 43 H 0.97003 * 119.99877 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2836 2.1476 1.0899 5 6 2.7418 3.4303 0.8427 6 6 2.8539 3.7481 -0.4479 7 6 3.3240 5.0785 -0.9772 8 1 3.8818 5.6019 -0.2008 9 6 2.1143 5.9191 -1.3907 10 7 4.1918 4.8627 -2.1427 11 6 5.1167 5.9892 -2.3262 12 6 6.0015 5.7290 -3.5469 13 6 6.8011 4.4424 -3.3323 14 6 5.1234 5.5823 -4.7912 15 6 6.9507 6.8844 -3.7347 16 1 6.9251 7.7207 -3.0519 17 6 7.8511 6.8741 -4.7788 18 7 7.8819 5.8559 -5.6105 19 14 9.0272 8.3065 -5.0120 20 1 10.2792 8.0471 -4.2566 21 1 9.3423 8.4584 -6.4552 22 1 8.3951 9.5528 -4.5096 23 16 2.3699 2.3769 -1.4372 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5137 0.8901 28 1 1.8934 -0.5139 -0.8900 29 1 2.1430 1.7635 2.0894 30 1 2.9861 4.1225 1.6349 31 1 2.4543 6.8812 -1.7741 32 1 1.5564 5.3956 -2.1672 33 1 1.4704 6.0791 -0.5260 34 1 3.6454 4.7041 -2.9760 35 1 4.5471 6.9057 -2.4795 36 1 5.7420 6.0940 -1.4394 37 1 6.1148 3.6065 -3.1962 38 1 7.4318 4.2573 -4.2018 39 1 7.4266 4.5469 -2.4458 40 1 4.5538 6.4989 -4.9441 41 1 5.7539 5.3965 -5.6609 42 1 4.4372 4.7464 -4.6551 43 1 8.5152 5.8488 -6.3453 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414169499.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:38 Heat of formation + Delta-G solvation = 11.186774 kcal Electronic energy + Delta-G solvation = -20000.891795 eV Core-core repulsion = 17171.888463 eV Total energy + Delta-G solvation = -2829.003333 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.33926 -37.13681 -35.03635 -33.40725 -31.45144 -29.07850 -27.67832 -25.55392 -25.24645 -24.84444 -23.74065 -22.13374 -21.32252 -19.03627 -18.19866 -16.79988 -15.83840 -15.48625 -14.83208 -14.43117 -14.33261 -14.20200 -13.92134 -13.54741 -13.00155 -12.76185 -12.68757 -12.39390 -12.14097 -11.99795 -11.77029 -11.58187 -11.47385 -11.25775 -11.13157 -10.98200 -10.88243 -10.64479 -10.58895 -10.36135 -10.17456 -10.04267 -9.38310 -9.10329 -8.62220 -8.30716 -8.26355 -8.22204 -7.73181 -5.90226 -4.00724 1.19093 1.82151 2.27102 2.89562 3.31892 3.38817 3.41418 4.43587 4.67601 4.72751 4.93058 5.04819 5.15440 5.30605 5.35253 5.37385 5.42603 5.60509 5.67336 5.69160 5.81345 5.89539 5.93144 6.01077 6.16209 6.32112 6.33197 6.40044 6.50816 6.67616 6.72379 6.89792 7.08333 7.17714 7.40560 7.48047 7.70633 7.76986 7.83945 7.92423 8.22023 8.35789 8.56604 9.00677 9.64252 11.10250 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.033901 B = 0.003608 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.745144 B = 7759.466336 C = 8042.800828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.050 4.050 3 C -0.198 4.198 4 C -0.134 4.134 5 C -0.154 4.154 6 C -0.138 4.138 7 C 0.146 3.854 8 H 0.091 0.909 9 C -0.176 4.176 10 N -0.679 5.679 11 C 0.076 3.924 12 C 0.070 3.930 13 C -0.119 4.119 14 C -0.132 4.132 15 C -0.507 4.507 16 H 0.052 0.948 17 C 0.065 3.935 18 N -0.884 5.884 19 Si 0.888 3.112 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.276 1.276 23 S 0.125 5.875 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.131 0.869 30 H 0.133 0.867 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.338 0.662 35 H 0.016 0.984 36 H 0.057 0.943 37 H 0.020 0.980 38 H 0.074 0.926 39 H 0.017 0.983 40 H 0.019 0.981 41 H 0.083 0.917 42 H 0.010 0.990 43 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.966 -8.086 10.415 19.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.089 4.089 3 C -0.315 4.315 4 C -0.165 4.165 5 C -0.184 4.184 6 C -0.257 4.257 7 C 0.034 3.966 8 H 0.109 0.891 9 C -0.236 4.236 10 N -0.310 5.310 11 C -0.052 4.052 12 C 0.069 3.931 13 C -0.177 4.177 14 C -0.190 4.190 15 C -0.546 4.546 16 H 0.070 0.930 17 C -0.135 4.135 18 N -0.523 5.523 19 Si 0.716 3.284 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.201 1.201 23 S 0.390 5.610 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.148 0.852 30 H 0.151 0.849 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.158 0.842 35 H 0.034 0.966 36 H 0.076 0.924 37 H 0.039 0.961 38 H 0.092 0.908 39 H 0.036 0.964 40 H 0.038 0.962 41 H 0.102 0.898 42 H 0.029 0.971 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.485 -8.781 9.018 18.447 hybrid contribution 0.259 1.838 1.134 2.175 sum -13.227 -6.943 10.152 18.061 Atomic orbital electron populations 1.21785 0.94702 1.01608 1.02343 1.20027 0.95821 0.90189 1.02902 1.24492 1.09629 1.00831 0.96571 1.19920 1.03610 0.94205 0.98785 1.19939 1.05494 0.97194 0.95780 1.24608 1.05443 0.99476 0.96161 1.20023 0.92548 0.88747 0.95328 0.89135 1.22508 0.98659 1.00683 1.01706 1.60731 1.20511 1.44242 1.05531 1.22195 0.93391 0.88868 1.00714 1.18083 0.91597 0.94617 0.88794 1.21636 0.99062 0.96393 1.00570 1.21835 0.98081 0.96127 1.02940 1.21104 1.17537 1.04066 1.11865 0.93012 1.24881 0.97071 0.95738 0.95859 1.69837 1.36565 1.29720 1.16168 0.86664 0.81508 0.83034 0.77147 1.20801 1.21340 1.20130 1.84287 1.63106 1.04944 1.08651 0.92500 0.92343 0.92495 0.90468 0.90983 0.85166 0.84947 0.91758 0.92487 0.92282 0.84187 0.96594 0.92444 0.96072 0.90769 0.96358 0.96226 0.89789 0.97134 0.93197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.90 37.16 0.37 -0.82 16 2 C -0.05 -0.47 6.43 -27.88 -0.18 -0.65 16 3 C -0.20 -2.40 5.76 -36.01 -0.21 -2.60 16 4 C -0.13 -1.62 10.05 -41.21 -0.41 -2.04 16 5 C -0.15 -2.02 10.04 -41.21 -0.41 -2.43 16 6 C -0.14 -1.99 5.46 -36.00 -0.20 -2.19 16 7 C 0.15 2.19 3.02 -68.86 -0.21 1.98 16 8 H 0.09 1.36 7.78 -51.93 -0.40 0.95 16 9 C -0.18 -2.32 9.14 37.16 0.34 -1.98 16 10 N -0.68 -12.13 5.22 -107.95 -0.56 -12.69 16 11 C 0.08 1.58 4.38 -3.82 -0.02 1.56 16 12 C 0.07 1.68 0.57 -155.66 -0.09 1.59 16 13 C -0.12 -2.93 8.09 37.16 0.30 -2.63 16 14 C -0.13 -3.12 7.92 37.16 0.29 -2.82 16 15 C -0.51 -13.64 8.01 -34.44 -0.28 -13.92 16 16 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 17 C 0.07 1.78 5.15 -17.82 -0.09 1.69 16 18 N -0.88 -24.56 9.35 55.43 0.52 -24.04 16 19 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 S 0.12 1.72 23.06 -107.50 -2.48 -0.76 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 30 H 0.13 1.53 8.06 -52.48 -0.42 1.10 16 31 H 0.06 0.87 7.45 -51.93 -0.39 0.49 16 32 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.34 6.06 6.51 -39.29 -0.26 5.81 16 35 H 0.02 0.33 7.44 -51.93 -0.39 -0.06 16 36 H 0.06 1.22 8.06 -51.93 -0.42 0.80 16 37 H 0.02 0.48 7.60 -51.93 -0.39 0.09 16 38 H 0.07 2.00 6.07 -51.93 -0.32 1.69 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.08 2.21 6.07 -51.92 -0.32 1.89 16 42 H 0.01 0.21 6.57 -51.93 -0.34 -0.13 16 43 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 351.39 15.07 5.30 5.30 Total: -1.00 -27.56 351.39 -10.45 -38.01 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -7.41 Total: 3.32 kcal Atomic # 6 Polarization: -24.49 SS G_CDS: -0.79 Total: -25.28 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: -0.04 Total: -36.73 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -2.48 Total: -0.76 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -27.56 -10.45 -38.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414169499.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.194 kcal (2) G-P(sol) polarization free energy of solvation -27.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds