Wall clock time and date at job start Tue Mar 31 2020 05:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47108 * 2 1 4 4 N 1.46894 * 109.47600 * 120.00676 * 2 1 3 5 5 C 1.46897 * 111.00344 * 154.83221 * 4 2 1 6 6 C 1.52999 * 109.47217 * 288.64816 * 5 4 2 7 7 C 1.52996 * 109.47166 * 185.42422 * 6 5 4 8 8 C 1.50702 * 109.47208 * 179.97438 * 7 6 5 9 9 H 1.07995 * 119.99882 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00335 * 180.02562 * 8 7 6 11 11 N 1.31519 * 119.99666 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 120.00291 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47191 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47293 * 119.99653 * 12 10 8 15 15 H 1.48498 * 109.47160 * 239.99838 * 12 10 8 16 16 C 1.46901 * 110.99960 * 278.78962 * 4 2 1 17 17 H 1.09005 * 109.46901 * 304.00386 * 16 4 2 18 18 C 1.53000 * 109.47300 * 64.00171 * 16 4 2 19 19 C 1.50700 * 109.47301 * 184.00658 * 16 4 2 20 20 C 1.38420 * 122.53766 * 133.25178 * 19 16 4 21 21 C 1.33399 * 114.91676 * 179.72674 * 20 19 16 22 22 S 1.75877 * 109.59455 * 0.26738 * 21 20 19 23 23 C 1.33387 * 122.53743 * 313.50406 * 19 16 4 24 24 H 1.08999 * 109.46773 * 309.57947 * 1 2 3 25 25 H 1.09001 * 109.47576 * 69.58145 * 1 2 3 26 26 H 1.08998 * 109.46889 * 189.58438 * 1 2 3 27 27 H 1.09008 * 109.46588 * 240.00460 * 2 1 3 28 28 H 1.08999 * 109.46879 * 174.33520 * 3 2 1 29 29 H 1.08997 * 109.47541 * 294.34019 * 3 2 1 30 30 H 1.09003 * 109.46750 * 54.33703 * 3 2 1 31 31 H 1.09003 * 109.46848 * 48.64819 * 5 4 2 32 32 H 1.08997 * 109.47092 * 168.64881 * 5 4 2 33 33 H 1.09008 * 109.46925 * 305.42078 * 6 5 4 34 34 H 1.08995 * 109.47672 * 65.41890 * 6 5 4 35 35 H 1.08995 * 109.47139 * 299.99810 * 7 6 5 36 36 H 1.09003 * 109.47569 * 60.00000 * 7 6 5 37 37 H 0.97001 * 119.99440 * 180.02562 * 11 10 8 38 38 H 1.08997 * 109.46789 * 37.37077 * 18 16 4 39 39 H 1.08997 * 109.46909 * 157.37394 * 18 16 4 40 40 H 1.09004 * 109.46916 * 277.36958 * 18 16 4 41 41 H 1.07997 * 122.54407 * 359.97438 * 20 19 16 42 42 H 1.08000 * 125.20070 * 180.25234 * 21 20 19 43 43 H 1.07995 * 125.20548 * 359.97181 * 23 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0198 -0.6926 1.1993 5 6 3.3655 -1.2389 0.9791 6 6 3.2822 -2.4296 0.0219 7 6 4.6606 -3.0819 -0.1017 8 6 4.5785 -4.2551 -1.0440 9 1 3.6372 -4.5102 -1.5079 10 6 5.7048 -5.0035 -1.3131 11 7 6.8510 -4.6931 -0.7478 12 14 5.6032 -6.4572 -2.4816 13 1 4.2114 -6.5946 -2.9810 14 1 6.5212 -6.2363 -3.6277 15 1 5.9958 -7.6970 -1.7647 16 6 1.9977 0.1979 2.3674 17 1 2.5775 1.0953 2.1511 18 6 0.5526 0.5884 2.6839 19 6 2.5970 -0.5136 3.5530 20 6 3.5363 0.0782 4.3797 21 6 3.9604 -0.6871 5.3867 22 16 3.1585 -2.2509 5.3173 23 6 2.2661 -1.7631 3.8822 24 1 -0.3633 0.6548 0.7921 25 1 -0.3634 0.3585 -0.9631 26 1 -0.3633 -1.0133 0.1711 27 1 1.8933 -0.5138 -0.8901 28 1 3.1253 1.4441 0.1014 29 1 1.7618 1.9263 -0.9363 30 1 1.5962 1.9847 0.8350 31 1 4.0039 -0.4687 0.5463 32 1 3.7849 -1.5661 1.9304 33 1 2.5691 -3.1577 0.4089 34 1 2.9539 -2.0853 -0.9587 35 1 5.3737 -2.3540 -0.4886 36 1 4.9890 -3.4264 0.8790 37 1 7.6435 -5.2194 -0.9374 38 1 -0.1015 -0.2652 2.5062 39 1 0.4787 0.8918 3.7281 40 1 0.2514 1.4168 2.0426 41 1 3.8956 1.0847 4.2238 42 1 4.6854 -0.3916 6.1306 43 1 1.5554 -2.3794 3.3517 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000421020592.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:16 Heat of formation + Delta-G solvation = 31.681945 kcal Electronic energy + Delta-G solvation = -20596.043284 eV Core-core repulsion = 17767.928688 eV Total energy + Delta-G solvation = -2828.114595 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.78345 -37.11266 -34.10206 -32.18636 -31.92680 -29.60542 -28.63165 -27.23322 -25.84894 -24.44893 -22.61396 -21.92727 -20.23307 -19.27427 -18.20395 -17.66083 -16.33169 -15.69750 -15.35519 -14.65842 -14.43577 -14.25656 -14.04519 -13.42194 -13.01972 -12.87520 -12.62688 -12.41219 -12.31090 -12.22899 -12.03473 -11.82814 -11.52795 -11.39834 -11.27274 -11.04980 -10.93970 -10.75314 -10.53556 -10.43270 -10.42367 -10.09800 -9.49930 -9.26398 -8.98287 -8.59026 -8.29222 -8.22144 -7.94679 -5.94517 -3.96130 1.19196 1.83305 2.15959 2.82915 3.34122 3.41394 3.45962 4.14384 4.51151 4.84498 5.03074 5.15014 5.26069 5.31009 5.39956 5.41377 5.44400 5.48050 5.65863 5.73964 5.76678 5.84798 5.85335 5.87791 5.96349 6.06070 6.11018 6.11941 6.26643 6.40669 6.44370 6.47838 6.53331 6.62557 6.80646 6.91890 7.22957 7.50509 7.53460 7.75915 7.91868 8.06981 8.50470 9.11537 9.67549 11.16995 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.014022 B = 0.005106 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.431864 B = 5482.508494 C = 6875.269733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.073 3.927 3 C -0.183 4.183 4 N -0.524 5.524 5 C 0.052 3.948 6 C -0.100 4.100 7 C 0.023 3.977 8 C -0.515 4.515 9 H 0.055 0.945 10 C 0.055 3.945 11 N -0.896 5.896 12 Si 0.890 3.110 13 H -0.273 1.273 14 H -0.285 1.285 15 H -0.284 1.284 16 C 0.137 3.863 17 H 0.052 0.948 18 C -0.143 4.143 19 C -0.103 4.103 20 C -0.128 4.128 21 C -0.218 4.218 22 S 0.084 5.916 23 C -0.172 4.172 24 H 0.065 0.935 25 H 0.048 0.952 26 H 0.062 0.938 27 H 0.086 0.914 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.025 0.975 32 H 0.074 0.926 33 H 0.054 0.946 34 H 0.043 0.957 35 H 0.011 0.989 36 H 0.015 0.985 37 H 0.259 0.741 38 H 0.071 0.929 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.134 0.866 42 H 0.160 0.840 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.273 12.656 10.136 19.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.035 4.035 3 C -0.242 4.242 4 N -0.248 5.248 5 C -0.075 4.075 6 C -0.138 4.138 7 C -0.015 4.015 8 C -0.554 4.554 9 H 0.073 0.927 10 C -0.145 4.145 11 N -0.536 5.536 12 Si 0.718 3.282 13 H -0.197 1.197 14 H -0.211 1.211 15 H -0.210 1.210 16 C 0.026 3.974 17 H 0.070 0.930 18 C -0.200 4.200 19 C -0.116 4.116 20 C -0.159 4.159 21 C -0.354 4.354 22 S 0.347 5.653 23 C -0.308 4.308 24 H 0.084 0.916 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.104 0.896 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.043 0.957 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.030 0.970 36 H 0.033 0.967 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.152 0.848 42 H 0.177 0.823 43 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -11.343 10.874 11.141 19.262 hybrid contribution 0.808 1.088 -1.691 2.167 sum -10.535 11.962 9.450 18.531 Atomic orbital electron populations 1.22215 0.94847 1.02708 1.01258 1.21703 0.95623 0.92308 0.93903 1.22487 1.01400 0.98396 1.01916 1.62441 1.25838 1.34004 1.02513 1.22345 0.87259 0.96988 1.00879 1.21605 1.00755 0.95057 0.96375 1.19058 0.90567 0.94971 0.96889 1.21294 0.94989 1.12679 1.26396 0.92708 1.25025 0.95526 0.97677 0.96293 1.69986 0.99746 1.40031 1.43856 0.86570 0.78042 0.82718 0.80891 1.19745 1.21092 1.21048 1.20293 0.95908 0.93379 0.87810 0.93041 1.22192 0.95661 1.01577 1.00617 1.18775 0.99295 0.94807 0.98684 1.20037 0.98949 1.01294 0.95665 1.25478 1.07446 0.97556 1.04903 1.84303 1.38471 1.15826 1.26673 1.25489 1.05849 0.99384 1.00043 0.91619 0.93272 0.91883 0.89605 0.92705 0.92457 0.92185 0.95652 0.90754 0.92769 0.93827 0.97018 0.96697 0.93171 0.91029 0.92791 0.92094 0.84803 0.82252 0.81393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.36 37.16 0.31 -1.40 16 2 C 0.07 0.97 2.68 -67.72 -0.18 0.79 16 3 C -0.18 -2.13 7.85 37.16 0.29 -1.84 16 4 N -0.52 -7.61 3.97 -220.10 -0.87 -8.48 16 5 C 0.05 0.94 4.55 -3.83 -0.02 0.92 16 6 C -0.10 -2.13 5.13 -26.73 -0.14 -2.27 16 7 C 0.02 0.60 4.97 -27.88 -0.14 0.47 16 8 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 9 H 0.05 1.55 7.74 -52.49 -0.41 1.15 16 10 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 11 N -0.90 -27.53 13.29 55.43 0.74 -26.80 16 12 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 13 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 15 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 16 C 0.14 1.72 1.83 -68.86 -0.13 1.60 16 17 H 0.05 0.65 5.94 -51.93 -0.31 0.34 16 18 C -0.14 -1.50 7.45 37.16 0.28 -1.22 16 19 C -0.10 -1.38 3.08 -106.25 -0.33 -1.71 16 20 C -0.13 -1.60 9.93 -41.21 -0.41 -2.01 16 21 C -0.22 -2.62 11.23 29.04 0.33 -2.29 16 22 S 0.08 1.07 23.34 -107.50 -2.51 -1.44 16 23 C -0.17 -2.38 9.64 29.04 0.28 -2.10 16 24 H 0.07 0.65 4.38 -51.93 -0.23 0.43 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.09 1.30 6.24 -51.92 -0.32 0.98 16 28 H 0.05 0.70 7.13 -51.93 -0.37 0.33 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.62 5.20 -51.93 -0.27 0.35 16 31 H 0.03 0.47 7.19 -51.93 -0.37 0.09 16 32 H 0.07 1.41 5.77 -51.93 -0.30 1.11 16 33 H 0.05 1.17 8.14 -51.92 -0.42 0.75 16 34 H 0.04 0.92 6.68 -51.93 -0.35 0.57 16 35 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.07 0.79 7.24 -51.93 -0.38 0.41 16 39 H 0.05 0.54 7.94 -51.93 -0.41 0.12 16 40 H 0.06 0.57 4.91 -51.93 -0.26 0.32 16 41 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 42 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 43 H 0.17 2.36 8.06 -52.49 -0.42 1.94 16 LS Contribution 340.42 15.07 5.13 5.13 Total: -1.00 -30.34 340.42 -9.71 -40.05 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -6.91 Total: -0.72 kcal Atomic # 6 Polarization: -24.54 SS G_CDS: -0.26 Total: -24.81 kcal Atomic # 7 Polarization: -35.14 SS G_CDS: -0.14 Total: -35.28 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -2.51 Total: -1.44 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.34 -9.71 -40.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421020592.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.731 kcal (2) G-P(sol) polarization free energy of solvation -30.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds