Wall clock time and date at job start Tue Mar 31 2020 05:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42906 * 114.00250 * 2 1 4 4 C 1.52993 * 109.47606 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47265 * 182.32296 * 4 3 2 6 6 H 1.09005 * 109.46757 * 305.67500 * 5 4 3 7 7 C 1.52998 * 109.47240 * 65.67956 * 5 4 3 8 8 C 1.50699 * 109.47072 * 185.00091 * 7 5 4 9 9 C 1.38271 * 119.98909 * 89.99732 * 8 7 5 10 10 C 1.38215 * 120.05468 * 180.02562 * 9 8 7 11 11 C 1.38223 * 120.02623 * 0.26323 * 10 9 8 12 12 C 1.38441 * 119.97046 * 359.41928 * 11 10 9 13 13 F 1.35098 * 120.02607 * 180.30639 * 12 11 10 14 14 C 1.38170 * 119.98874 * 269.97682 * 8 7 5 15 15 N 1.46900 * 109.47431 * 185.68014 * 5 4 3 16 16 C 1.46904 * 111.00010 * 85.56215 * 15 5 4 17 17 C 1.50708 * 109.46905 * 174.78017 * 16 15 5 18 18 H 1.07997 * 120.00160 * 0.02562 * 17 16 15 19 19 C 1.37873 * 119.99560 * 180.02562 * 17 16 15 20 20 N 1.31520 * 119.99553 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 120.00500 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.46757 * 89.99895 * 21 19 17 23 23 H 1.48495 * 109.47247 * 209.99557 * 21 19 17 24 24 H 1.48501 * 109.47022 * 329.99962 * 21 19 17 25 25 H 1.09002 * 109.47087 * 299.99920 * 1 2 3 26 26 H 1.09001 * 109.47269 * 59.99849 * 1 2 3 27 27 H 1.09006 * 109.46894 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46980 * 59.99449 * 3 2 1 29 29 H 1.09001 * 109.46817 * 300.00246 * 3 2 1 30 30 H 1.09005 * 109.47142 * 62.31845 * 4 3 2 31 31 H 1.09004 * 109.47069 * 302.32402 * 4 3 2 32 32 H 1.08990 * 109.47126 * 64.99859 * 7 5 4 33 33 H 1.09003 * 109.46763 * 305.00104 * 7 5 4 34 34 H 1.08004 * 119.97012 * 0.02562 * 9 8 7 35 35 H 1.07997 * 119.99231 * 179.97438 * 10 9 8 36 36 H 1.07997 * 120.01429 * 179.71986 * 11 10 9 37 37 H 1.07997 * 120.00976 * 359.97438 * 14 8 7 38 38 H 1.00902 * 110.99717 * 321.61394 * 15 5 4 39 39 H 1.08992 * 109.47429 * 294.78306 * 16 15 5 40 40 H 1.08999 * 109.46879 * 54.78794 * 16 15 5 41 41 H 0.97001 * 119.99783 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1576 2.5812 0.0578 6 1 3.7601 3.1903 -0.7541 7 6 3.8186 3.2349 1.3990 8 6 4.3258 4.6539 1.4086 9 6 3.5134 5.6813 0.9653 10 6 3.9773 6.9832 0.9730 11 6 5.2562 7.2591 1.4189 12 6 6.0682 6.2322 1.8692 13 9 7.3162 6.5013 2.3110 14 6 5.6023 4.9281 1.8608 15 7 5.6162 2.4737 -0.0797 16 6 6.0106 2.4399 -1.4944 17 6 7.5140 2.4588 -1.5973 18 1 8.1162 2.4921 -0.7015 19 6 8.1205 2.4335 -2.8352 20 7 9.4325 2.4505 -2.9251 21 14 7.0789 2.3766 -4.3848 22 1 6.7832 3.7610 -4.8335 23 1 7.8190 1.6576 -5.4527 24 1 5.8063 1.6661 -4.1000 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6886 1.8464 0.8899 29 1 1.6886 1.8464 -0.8900 30 1 3.8596 0.6803 -0.9109 31 1 3.8546 0.6081 0.8676 32 1 4.2910 2.6748 2.2058 33 1 2.7378 3.2343 1.5405 34 1 2.5154 5.4661 0.6128 35 1 3.3420 7.7847 0.6262 36 1 5.6201 8.2759 1.4206 37 1 6.2364 4.1256 2.2076 38 1 5.9672 1.6661 0.4129 39 1 5.6261 1.5311 -1.9572 40 1 5.6004 3.3101 -2.0067 41 1 9.8593 2.4331 -3.7960 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425975510.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:39 Heat of formation + Delta-G solvation = -77.435890 kcal Electronic energy + Delta-G solvation = -21942.474474 eV Core-core repulsion = 18543.414998 eV Total energy + Delta-G solvation = -3399.059476 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -48.52686 -39.19311 -38.10815 -36.60315 -33.23930 -31.87203 -31.21005 -30.23032 -28.16163 -26.39720 -26.23887 -23.39810 -22.46909 -21.64207 -21.14644 -20.19395 -17.21870 -16.72113 -16.42626 -16.07961 -16.03724 -15.87572 -15.26407 -15.22363 -14.74419 -14.12592 -14.01316 -13.68142 -13.62220 -13.21883 -13.01560 -12.60723 -12.47932 -12.13513 -11.84109 -11.78142 -11.60908 -11.44333 -11.29927 -11.05994 -10.76273 -10.63618 -10.54160 -10.34546 -9.85339 -9.70010 -9.31033 -8.59578 -8.57330 -8.38666 -7.50182 -6.04059 -4.01520 1.42878 1.52868 3.28875 3.36154 3.37593 3.68199 3.85073 4.42701 4.54512 4.76202 4.88427 4.97036 5.01764 5.12719 5.17596 5.22738 5.28473 5.30706 5.34495 5.42465 5.46949 5.53771 5.59659 5.66176 5.68584 5.91280 5.97378 6.09098 6.23803 6.35882 6.37328 6.44662 6.52110 6.74877 6.81707 7.00722 7.08245 7.19412 7.60943 7.86912 8.28536 8.65380 9.05025 9.57892 11.09360 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.007849 B = 0.007554 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3566.512359 B = 3705.617829 C = 6529.377627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.394 6.394 3 C 0.063 3.937 4 C -0.149 4.149 5 C 0.092 3.908 6 H 0.075 0.925 7 C -0.073 4.073 8 C -0.032 4.032 9 C -0.137 4.137 10 C -0.098 4.098 11 C -0.165 4.165 12 C 0.098 3.902 13 F -0.143 7.143 14 C -0.114 4.114 15 N -0.666 5.666 16 C 0.166 3.834 17 C -0.511 4.511 18 H 0.079 0.921 19 C 0.069 3.931 20 N -0.900 5.900 21 Si 0.874 3.126 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.268 1.268 25 H 0.039 0.961 26 H 0.039 0.961 27 H 0.083 0.917 28 H 0.052 0.948 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.120 0.880 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.138 0.862 38 H 0.336 0.664 39 H -0.015 1.015 40 H 0.020 0.980 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.764 3.383 9.024 20.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.313 6.313 3 C -0.014 4.014 4 C -0.188 4.188 5 C -0.019 4.019 6 H 0.093 0.907 7 C -0.111 4.111 8 C -0.032 4.032 9 C -0.155 4.155 10 C -0.116 4.116 11 C -0.184 4.184 12 C 0.079 3.921 13 F -0.121 7.121 14 C -0.133 4.133 15 N -0.295 5.295 16 C 0.038 3.962 17 C -0.550 4.550 18 H 0.097 0.903 19 C -0.133 4.133 20 N -0.539 5.539 21 Si 0.702 3.298 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.193 1.193 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.101 0.899 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.138 0.862 35 H 0.143 0.857 36 H 0.145 0.855 37 H 0.155 0.845 38 H 0.154 0.846 39 H 0.003 0.997 40 H 0.038 0.962 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.316 3.913 8.959 19.885 hybrid contribution -0.626 -0.574 -1.310 1.562 sum -17.942 3.339 7.648 19.788 Atomic orbital electron populations 1.22712 0.81501 1.02506 0.99792 1.87904 1.19344 1.28620 1.95385 1.22667 0.94482 0.84279 1.00010 1.22384 0.93028 0.99665 1.03743 1.21515 0.90701 0.93200 0.96492 0.90725 1.20774 0.99841 0.91905 0.98580 1.19513 0.93011 0.95141 0.95574 1.21009 1.00123 0.92553 1.01853 1.20829 0.94917 0.96777 0.99051 1.21029 0.95177 0.98777 1.03442 1.17753 0.80262 0.94267 0.99846 1.91486 1.38931 1.94653 1.87069 1.21016 0.96359 0.94702 1.01193 1.60611 1.06396 1.46859 1.15675 1.20016 0.97262 0.94540 0.84352 1.21026 0.89291 1.50242 0.94417 0.90276 1.24894 0.94766 0.94856 0.98774 1.69902 1.08421 1.51073 1.24510 0.86874 0.80872 0.78506 0.83567 1.20255 1.21229 1.19255 0.94234 0.94237 0.89869 0.93037 0.93493 0.90749 0.90867 0.90592 0.91059 0.86156 0.85744 0.85489 0.84453 0.84588 0.99718 0.96234 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.39 -5.14 10.70 -35.23 -0.38 -5.52 16 3 C 0.06 0.75 5.76 37.15 0.21 0.96 16 4 C -0.15 -2.06 5.03 -26.74 -0.13 -2.20 16 5 C 0.09 1.38 2.04 -67.72 -0.14 1.24 16 6 H 0.07 1.18 7.71 -51.93 -0.40 0.78 16 7 C -0.07 -0.91 4.90 -27.88 -0.14 -1.04 16 8 C -0.03 -0.45 4.95 -104.64 -0.52 -0.97 16 9 C -0.14 -1.72 9.70 -39.58 -0.38 -2.11 16 10 C -0.10 -1.20 10.04 -39.60 -0.40 -1.60 16 11 C -0.17 -2.29 10.03 -39.51 -0.40 -2.69 16 12 C 0.10 1.58 7.30 -39.42 -0.29 1.29 16 13 F -0.14 -2.47 17.27 2.25 0.04 -2.43 16 14 C -0.11 -1.81 9.29 -39.52 -0.37 -2.18 16 15 N -0.67 -12.72 5.59 -107.99 -0.60 -13.33 16 16 C 0.17 3.91 4.33 -4.97 -0.02 3.89 16 17 C -0.51 -14.54 9.92 -34.44 -0.34 -14.88 16 18 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 19 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 20 N -0.90 -27.92 13.96 55.43 0.77 -27.15 16 21 Si 0.87 21.75 27.47 -169.99 -4.67 17.09 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 25 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.52 6.39 -51.93 -0.33 0.19 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 1.20 7.47 -51.93 -0.39 0.81 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.08 0.91 8.08 -51.93 -0.42 0.49 16 33 H 0.07 0.72 6.27 -51.93 -0.33 0.39 16 34 H 0.12 1.22 8.06 -52.48 -0.42 0.79 16 35 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 36 H 0.13 1.51 8.06 -52.49 -0.42 1.08 16 37 H 0.14 2.21 8.06 -52.49 -0.42 1.79 16 38 H 0.34 6.24 8.52 -39.29 -0.33 5.90 16 39 H -0.01 -0.35 6.57 -51.93 -0.34 -0.69 16 40 H 0.02 0.48 7.35 -51.93 -0.38 0.10 16 41 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 343.18 15.07 5.17 5.17 Total: -1.00 -31.95 343.18 -7.88 -39.83 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -6.32 Total: 3.30 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: -1.89 Total: -16.96 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 0.17 Total: -40.48 kcal Atomic # 8 Polarization: -5.14 SS G_CDS: -0.38 Total: -5.52 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.04 Total: -2.43 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.95 -7.88 -39.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425975510.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.604 kcal (2) G-P(sol) polarization free energy of solvation -31.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds