Wall clock time and date at job start Tue Mar 31 2020 05:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42906 * 114.00250 * 2 1 4 4 C 1.52993 * 109.47606 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47265 * 182.32296 * 4 3 2 6 6 H 1.09005 * 109.46757 * 305.67500 * 5 4 3 7 7 C 1.52998 * 109.47240 * 65.67956 * 5 4 3 8 8 C 1.50699 * 109.47072 * 185.00091 * 7 5 4 9 9 C 1.38271 * 119.98909 * 89.99732 * 8 7 5 10 10 C 1.38215 * 120.05468 * 180.02562 * 9 8 7 11 11 C 1.38223 * 120.02623 * 0.26323 * 10 9 8 12 12 C 1.38441 * 119.97046 * 359.41928 * 11 10 9 13 13 F 1.35098 * 120.02607 * 180.30639 * 12 11 10 14 14 C 1.38170 * 119.98874 * 269.97682 * 8 7 5 15 15 N 1.46900 * 109.47431 * 185.68014 * 5 4 3 16 16 C 1.46904 * 111.00010 * 85.56215 * 15 5 4 17 17 C 1.50708 * 109.46905 * 174.78017 * 16 15 5 18 18 H 1.07997 * 120.00160 * 0.02562 * 17 16 15 19 19 C 1.37873 * 119.99560 * 180.02562 * 17 16 15 20 20 N 1.31520 * 119.99553 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 120.00500 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.46757 * 89.99895 * 21 19 17 23 23 H 1.48495 * 109.47247 * 209.99557 * 21 19 17 24 24 H 1.48501 * 109.47022 * 329.99962 * 21 19 17 25 25 H 1.09002 * 109.47087 * 299.99920 * 1 2 3 26 26 H 1.09001 * 109.47269 * 59.99849 * 1 2 3 27 27 H 1.09006 * 109.46894 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46980 * 59.99449 * 3 2 1 29 29 H 1.09001 * 109.46817 * 300.00246 * 3 2 1 30 30 H 1.09005 * 109.47142 * 62.31845 * 4 3 2 31 31 H 1.09004 * 109.47069 * 302.32402 * 4 3 2 32 32 H 1.08990 * 109.47126 * 64.99859 * 7 5 4 33 33 H 1.09003 * 109.46763 * 305.00104 * 7 5 4 34 34 H 1.08004 * 119.97012 * 0.02562 * 9 8 7 35 35 H 1.07997 * 119.99231 * 179.97438 * 10 9 8 36 36 H 1.07997 * 120.01429 * 179.71986 * 11 10 9 37 37 H 1.07997 * 120.00976 * 359.97438 * 14 8 7 38 38 H 1.00902 * 110.99717 * 321.61394 * 15 5 4 39 39 H 1.08992 * 109.47429 * 294.78306 * 16 15 5 40 40 H 1.08999 * 109.46879 * 54.78794 * 16 15 5 41 41 H 0.97001 * 119.99783 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1576 2.5812 0.0578 6 1 3.7601 3.1903 -0.7541 7 6 3.8186 3.2349 1.3990 8 6 4.3258 4.6539 1.4086 9 6 3.5134 5.6813 0.9653 10 6 3.9773 6.9832 0.9730 11 6 5.2562 7.2591 1.4189 12 6 6.0682 6.2322 1.8692 13 9 7.3162 6.5013 2.3110 14 6 5.6023 4.9281 1.8608 15 7 5.6162 2.4737 -0.0797 16 6 6.0106 2.4399 -1.4944 17 6 7.5140 2.4588 -1.5973 18 1 8.1162 2.4921 -0.7015 19 6 8.1205 2.4335 -2.8352 20 7 9.4325 2.4505 -2.9251 21 14 7.0789 2.3766 -4.3848 22 1 6.7832 3.7610 -4.8335 23 1 7.8190 1.6576 -5.4527 24 1 5.8063 1.6661 -4.1000 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6886 1.8464 0.8899 29 1 1.6886 1.8464 -0.8900 30 1 3.8596 0.6803 -0.9109 31 1 3.8546 0.6081 0.8676 32 1 4.2910 2.6748 2.2058 33 1 2.7378 3.2343 1.5405 34 1 2.5154 5.4661 0.6128 35 1 3.3420 7.7847 0.6262 36 1 5.6201 8.2759 1.4206 37 1 6.2364 4.1256 2.2076 38 1 5.9672 1.6661 0.4129 39 1 5.6261 1.5311 -1.9572 40 1 5.6004 3.3101 -2.0067 41 1 9.8593 2.4331 -3.7960 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425975510.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:38 Heat of formation + Delta-G solvation = -98.342770 kcal Electronic energy + Delta-G solvation = -21943.381064 eV Core-core repulsion = 18543.414998 eV Total energy + Delta-G solvation = -3399.966066 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.79851 -40.27719 -39.06070 -37.83306 -35.12959 -33.43015 -32.45190 -31.30294 -29.52647 -27.91131 -27.07473 -24.56799 -23.56696 -23.11580 -22.62412 -21.38640 -18.94648 -18.21929 -17.43761 -17.21260 -16.97709 -16.87183 -16.67211 -16.49768 -16.13031 -15.51655 -15.39577 -15.00557 -14.73205 -14.52585 -14.35849 -14.18671 -13.72001 -13.41212 -13.25753 -12.90113 -12.79319 -12.53678 -12.47757 -12.39084 -12.18442 -11.95622 -11.81782 -11.67748 -11.61884 -11.45368 -10.80758 -10.54097 -9.69251 -9.49925 -9.04541 -8.29679 -6.32975 0.34016 0.45953 1.32191 1.33884 1.44467 2.32659 2.75398 2.87092 3.04776 3.44127 3.48240 3.83841 3.96836 4.03460 4.18541 4.21985 4.32671 4.42855 4.49058 4.50343 4.53336 4.59177 4.61640 4.63863 4.78751 4.87294 4.88074 4.96753 5.00072 5.10094 5.22085 5.26340 5.33893 5.35701 5.49974 5.55149 5.72997 5.98938 6.13060 6.28724 6.59217 6.69632 6.79322 7.31564 8.87513 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.007849 B = 0.007554 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3566.512359 B = 3705.617829 C = 6529.377627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.423 6.423 3 C 0.066 3.934 4 C -0.142 4.142 5 C 0.097 3.903 6 H 0.073 0.927 7 C -0.065 4.065 8 C -0.042 4.042 9 C -0.132 4.132 10 C -0.093 4.093 11 C -0.171 4.171 12 C 0.061 3.939 13 F -0.161 7.161 14 C -0.137 4.137 15 N -0.675 5.675 16 C 0.181 3.819 17 C -0.520 4.520 18 H 0.034 0.966 19 C 0.006 3.994 20 N -0.950 5.950 21 Si 0.948 3.052 22 H -0.267 1.267 23 H -0.282 1.282 24 H -0.249 1.249 25 H 0.056 0.944 26 H 0.047 0.953 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.108 0.892 34 H 0.156 0.844 35 H 0.162 0.838 36 H 0.143 0.857 37 H 0.119 0.881 38 H 0.336 0.664 39 H -0.014 1.014 40 H 0.019 0.981 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.933 3.992 8.301 23.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.343 6.343 3 C -0.011 4.011 4 C -0.181 4.181 5 C -0.014 4.014 6 H 0.091 0.909 7 C -0.102 4.102 8 C -0.043 4.043 9 C -0.150 4.150 10 C -0.111 4.111 11 C -0.189 4.189 12 C 0.042 3.958 13 F -0.140 7.140 14 C -0.156 4.156 15 N -0.304 5.304 16 C 0.052 3.948 17 C -0.558 4.558 18 H 0.052 0.948 19 C -0.191 4.191 20 N -0.591 5.591 21 Si 0.771 3.229 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.172 1.172 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.111 0.889 28 H 0.095 0.905 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.126 0.874 34 H 0.174 0.826 35 H 0.179 0.821 36 H 0.161 0.839 37 H 0.137 0.863 38 H 0.154 0.846 39 H 0.004 0.996 40 H 0.037 0.963 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -21.515 4.519 8.263 23.486 hybrid contribution 0.669 -0.758 -0.985 1.412 sum -20.846 3.761 7.278 22.398 Atomic orbital electron populations 1.22923 0.79497 1.03660 1.01022 1.87855 1.21588 1.29235 1.95644 1.22622 0.92543 0.84352 1.01537 1.22218 0.95072 0.98356 1.02463 1.21547 0.87693 0.94144 0.98003 0.90924 1.20764 1.01990 0.90647 0.96834 1.19752 0.92381 0.96557 0.95567 1.21460 1.01250 0.92083 1.00176 1.21303 0.94335 0.97937 0.97488 1.21343 0.95759 0.98935 1.02882 1.18182 0.80321 0.95401 1.01918 1.91429 1.40187 1.94791 1.87581 1.21073 0.97531 0.94299 1.02726 1.60494 1.09878 1.47096 1.12916 1.19686 0.93753 0.94236 0.87095 1.21344 0.91876 1.49622 0.93002 0.94761 1.25877 0.96026 0.94425 1.02801 1.70070 1.10657 1.52750 1.25617 0.85709 0.79535 0.79110 0.78546 1.19244 1.20759 1.17222 0.92537 0.93390 0.88940 0.90499 0.92828 0.93408 0.90722 0.90489 0.87358 0.82610 0.82065 0.83921 0.86324 0.84610 0.99597 0.96299 0.92519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 11.01 113.37 1.25 1.62 16 2 O -0.42 -9.92 10.70 -148.98 -1.59 -11.51 16 3 C 0.07 1.35 5.76 71.98 0.41 1.77 16 4 C -0.14 -3.66 5.03 30.59 0.15 -3.51 16 5 C 0.10 2.71 2.04 44.91 0.09 2.80 16 6 H 0.07 2.09 7.71 -2.38 -0.02 2.07 16 7 C -0.06 -1.44 4.90 29.85 0.15 -1.29 16 8 C -0.04 -1.11 4.95 -19.87 -0.10 -1.21 16 9 C -0.13 -2.81 9.70 22.27 0.22 -2.60 16 10 C -0.09 -1.96 10.04 22.26 0.22 -1.74 16 11 C -0.17 -4.52 10.03 22.31 0.22 -4.30 16 12 C 0.06 2.02 7.30 22.38 0.16 2.18 16 13 F -0.16 -5.94 17.27 44.97 0.78 -5.16 16 14 C -0.14 -4.47 9.29 22.31 0.21 -4.26 16 15 N -0.67 -25.92 5.59 -495.57 -2.77 -28.69 16 16 C 0.18 8.53 4.33 85.56 0.37 8.90 16 17 C -0.52 -30.58 9.92 25.60 0.25 -30.33 16 18 H 0.03 2.25 8.06 -2.91 -0.02 2.23 16 19 C 0.01 0.34 5.47 84.65 0.46 0.80 16 20 N -0.95 -60.88 13.96 21.45 0.30 -60.58 16 21 Si 0.95 44.88 27.47 68.60 1.88 46.76 16 22 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 23 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 24 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16 25 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 28 H 0.08 1.17 6.39 -2.39 -0.02 1.15 16 29 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.05 1.49 7.47 -2.38 -0.02 1.47 16 31 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.08 1.71 8.08 -2.39 -0.02 1.69 16 33 H 0.11 1.63 6.27 -2.39 -0.01 1.62 16 34 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 35 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 36 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 37 H 0.12 4.14 8.06 -2.91 -0.02 4.11 16 38 H 0.34 12.83 8.52 -89.69 -0.76 12.07 16 39 H -0.01 -0.64 6.57 -2.39 -0.02 -0.65 16 40 H 0.02 0.90 7.35 -2.39 -0.02 0.88 16 41 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 Total: -1.00 -72.74 343.18 2.87 -69.88 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: 0.20 Total: 20.47 kcal Atomic # 6 Polarization: -35.24 SS G_CDS: 4.08 Total: -31.16 kcal Atomic # 7 Polarization: -86.80 SS G_CDS: -2.47 Total: -89.27 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: -1.59 Total: -11.51 kcal Atomic # 9 Polarization: -5.94 SS G_CDS: 0.78 Total: -5.16 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.88 Total: 46.76 kcal Total: -72.74 2.87 -69.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425975510.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.467 kcal (2) G-P(sol) polarization free energy of solvation -72.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds