Wall clock time and date at job start Tue Mar 31 2020 05:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42900 * 113.99736 * 2 1 4 4 C 1.53006 * 109.46696 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46791 * 185.64625 * 4 3 2 6 6 H 1.08998 * 109.47489 * 54.28770 * 5 4 3 7 7 C 1.53000 * 109.47297 * 294.28987 * 5 4 3 8 8 C 1.50700 * 109.47355 * 174.99818 * 7 5 4 9 9 C 1.38269 * 119.98280 * 89.99959 * 8 7 5 10 10 C 1.38226 * 120.05022 * 179.74333 * 9 8 7 11 11 C 1.38215 * 120.02384 * 0.26171 * 10 9 8 12 12 C 1.38434 * 119.97625 * 359.97438 * 11 10 9 13 13 F 1.35108 * 120.02755 * 179.97438 * 12 11 10 14 14 C 1.38175 * 119.98988 * 270.25695 * 8 7 5 15 15 N 1.46899 * 109.47077 * 174.29210 * 5 4 3 16 16 C 1.46900 * 110.99962 * 277.18637 * 15 5 4 17 17 C 1.50699 * 109.47067 * 175.50313 * 16 15 5 18 18 H 1.08000 * 119.99950 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00081 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00285 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99603 * 0.02562 * 19 17 16 22 22 H 1.48507 * 109.47092 * 90.00209 * 21 19 17 23 23 H 1.48503 * 109.46869 * 209.99653 * 21 19 17 24 24 H 1.48496 * 109.47379 * 330.00032 * 21 19 17 25 25 H 1.08996 * 109.47116 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47240 * 299.99983 * 1 2 3 27 27 H 1.08995 * 109.46822 * 60.00328 * 1 2 3 28 28 H 1.09000 * 109.47438 * 59.99960 * 3 2 1 29 29 H 1.08995 * 109.46998 * 299.99802 * 3 2 1 30 30 H 1.08998 * 109.46999 * 65.64963 * 4 3 2 31 31 H 1.08996 * 109.47234 * 305.64388 * 4 3 2 32 32 H 1.09006 * 109.47216 * 55.00133 * 7 5 4 33 33 H 1.09002 * 109.47140 * 295.00623 * 7 5 4 34 34 H 1.08001 * 119.97761 * 0.02854 * 9 8 7 35 35 H 1.07996 * 119.98432 * 180.27371 * 10 9 8 36 36 H 1.08001 * 120.01640 * 179.97438 * 11 10 9 37 37 H 1.07998 * 120.00936 * 359.97438 * 14 8 7 38 38 H 1.00902 * 111.00062 * 41.14042 * 15 5 4 39 39 H 1.09002 * 109.47156 * 295.50647 * 16 15 5 40 40 H 1.09001 * 109.46897 * 55.50499 * 16 15 5 41 41 H 0.96995 * 119.99913 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1572 2.5754 0.1426 6 1 3.7499 3.0671 1.0260 7 6 3.8330 3.4082 -1.0994 8 6 4.3390 4.8146 -0.9073 9 6 5.6214 5.1476 -1.3026 10 6 6.0851 6.4385 -1.1319 11 6 5.2689 7.3967 -0.5609 12 6 3.9865 7.0633 -0.1603 13 9 3.1879 7.9990 0.3985 14 6 3.5231 5.7696 -0.3314 15 7 5.6142 2.4488 0.2805 16 6 5.9878 2.1550 1.6705 17 6 7.4746 1.9233 1.7527 18 1 8.0813 1.9883 0.8616 19 6 8.0605 1.6295 2.9658 20 7 9.3581 1.4278 3.0377 21 14 7.0111 1.5179 4.5071 22 1 6.5337 0.1225 4.6810 23 1 7.8208 1.9147 5.6870 24 1 5.8445 2.4278 4.3787 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8463 -0.8900 30 1 3.8646 0.7334 -0.9354 31 1 3.8501 0.5591 0.8360 32 1 2.7539 3.4280 -1.2520 33 1 4.3150 2.9643 -1.9704 34 1 6.2598 4.3996 -1.7492 35 1 7.0855 6.6985 -1.4451 36 1 5.6315 8.4052 -0.4273 37 1 2.5227 5.5082 -0.0194 38 1 5.9772 1.7474 -0.3475 39 1 5.7157 2.9979 2.3058 40 1 5.4617 1.2617 2.0071 41 1 9.7702 1.2208 3.8910 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425975518.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:41 Heat of formation + Delta-G solvation = -78.962021 kcal Electronic energy + Delta-G solvation = -21868.624356 eV Core-core repulsion = 18469.498702 eV Total energy + Delta-G solvation = -3399.125654 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.72590 -39.21262 -38.09938 -36.60859 -33.26894 -31.91435 -31.17180 -30.27693 -28.16844 -26.39336 -26.22845 -23.39294 -22.51864 -21.68705 -21.13839 -20.22193 -17.28503 -16.82627 -16.42365 -16.09001 -16.01923 -15.89509 -15.42446 -15.24579 -14.73122 -14.18632 -13.98377 -13.70383 -13.57309 -13.23763 -13.11596 -12.70281 -12.47947 -12.09234 -11.85394 -11.77687 -11.69482 -11.46449 -11.29539 -11.02922 -10.75090 -10.67210 -10.59320 -10.31953 -9.81303 -9.68927 -9.30447 -8.73462 -8.61467 -8.35839 -7.53990 -6.07469 -4.05246 1.42821 1.44365 3.27975 3.35759 3.38534 3.70185 3.83902 4.40589 4.41258 4.77026 4.87885 4.98408 4.99510 5.11059 5.16184 5.20447 5.26104 5.31878 5.40005 5.47495 5.51106 5.52487 5.55846 5.63981 5.66986 5.91134 5.96134 6.07081 6.26713 6.28749 6.32089 6.41173 6.58799 6.76417 6.82702 7.03699 7.10501 7.14830 7.58318 7.84959 8.28781 8.61422 8.99725 9.54889 11.05768 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.008447 B = 0.006619 C = 0.004271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3314.003407 B = 4229.114668 C = 6553.973255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.393 6.393 3 C 0.063 3.937 4 C -0.150 4.150 5 C 0.092 3.908 6 H 0.074 0.926 7 C -0.073 4.073 8 C -0.032 4.032 9 C -0.090 4.090 10 C -0.092 4.092 11 C -0.163 4.163 12 C 0.087 3.913 13 F -0.148 7.148 14 C -0.159 4.159 15 N -0.666 5.666 16 C 0.165 3.835 17 C -0.515 4.515 18 H 0.079 0.921 19 C 0.070 3.930 20 N -0.900 5.900 21 Si 0.875 3.125 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.267 1.267 25 H 0.083 0.917 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.133 0.867 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.337 0.663 39 H 0.025 0.975 40 H -0.018 1.018 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.367 5.527 -9.486 18.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.312 6.312 3 C -0.014 4.014 4 C -0.189 4.189 5 C -0.019 4.019 6 H 0.092 0.908 7 C -0.111 4.111 8 C -0.032 4.032 9 C -0.108 4.108 10 C -0.110 4.110 11 C -0.182 4.182 12 C 0.068 3.932 13 F -0.127 7.127 14 C -0.178 4.178 15 N -0.295 5.295 16 C 0.037 3.963 17 C -0.554 4.554 18 H 0.097 0.903 19 C -0.132 4.132 20 N -0.539 5.539 21 Si 0.702 3.298 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.192 1.192 25 H 0.101 0.899 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.151 0.849 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.144 0.856 38 H 0.155 0.845 39 H 0.043 0.957 40 H -0.001 1.001 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.010 6.046 -9.255 18.642 hybrid contribution -1.058 -0.607 1.321 1.798 sum -16.068 5.439 -7.934 18.728 Atomic orbital electron populations 1.22711 0.81514 1.02511 0.99781 1.87911 1.19331 1.28589 1.95379 1.22652 0.94523 0.84277 0.99928 1.22383 0.92963 0.99820 1.03737 1.21513 0.90838 0.92381 0.97188 0.90766 1.20770 0.99972 0.91351 0.99011 1.19542 0.93700 0.94488 0.95515 1.21113 0.94863 0.95819 0.99031 1.21014 0.99262 0.92934 0.97762 1.21040 0.93076 1.01051 1.03024 1.17634 0.89613 0.86546 0.99374 1.91459 1.73377 1.64657 1.83229 1.20930 1.01289 0.91804 1.03754 1.60678 1.06464 1.52924 1.09420 1.20022 0.96899 0.94009 0.85380 1.21033 0.90696 1.47468 0.96153 0.90308 1.24882 0.94790 0.94787 0.98720 1.69892 1.09697 1.48511 1.25768 0.86865 0.80848 0.78730 0.83320 1.20328 1.21175 1.19177 0.89858 0.94230 0.94260 0.93476 0.93198 0.90953 0.90485 0.91206 0.90406 0.84939 0.85303 0.85470 0.85593 0.84523 0.95709 1.00082 0.92660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.39 -5.30 10.70 -35.23 -0.38 -5.68 16 3 C 0.06 0.78 5.57 37.16 0.21 0.98 16 4 C -0.15 -2.11 5.05 -26.73 -0.13 -2.24 16 5 C 0.09 1.38 2.03 -67.71 -0.14 1.24 16 6 H 0.07 1.20 7.89 -51.93 -0.41 0.79 16 7 C -0.07 -0.90 4.90 -27.88 -0.14 -1.03 16 8 C -0.03 -0.44 4.95 -104.63 -0.52 -0.96 16 9 C -0.09 -1.27 9.31 -39.57 -0.37 -1.64 16 10 C -0.09 -1.22 10.04 -39.59 -0.40 -1.62 16 11 C -0.16 -2.19 10.03 -39.52 -0.40 -2.58 16 12 C 0.09 1.25 7.30 -39.42 -0.29 0.96 16 13 F -0.15 -2.16 17.27 2.25 0.04 -2.12 16 14 C -0.16 -2.18 9.68 -39.51 -0.38 -2.56 16 15 N -0.67 -12.45 5.64 -107.99 -0.61 -13.06 16 16 C 0.16 3.85 4.32 -4.98 -0.02 3.83 16 17 C -0.52 -14.35 9.82 -34.44 -0.34 -14.68 16 18 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 19 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 20 N -0.90 -27.46 13.96 55.43 0.77 -26.69 16 21 Si 0.87 21.68 27.47 -169.99 -4.67 17.01 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 25 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.52 6.76 -51.93 -0.35 0.17 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.08 1.27 7.14 -51.93 -0.37 0.90 16 32 H 0.07 0.72 6.44 -51.93 -0.33 0.38 16 33 H 0.08 0.89 8.09 -51.93 -0.42 0.47 16 34 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 35 H 0.13 1.45 8.06 -52.49 -0.42 1.02 16 36 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 37 H 0.13 1.51 8.06 -52.49 -0.42 1.08 16 38 H 0.34 6.14 8.45 -39.29 -0.33 5.81 16 39 H 0.02 0.62 7.19 -51.93 -0.37 0.24 16 40 H -0.02 -0.43 6.55 -51.93 -0.34 -0.77 16 41 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 LS Contribution 343.08 15.07 5.17 5.17 Total: -1.00 -31.07 343.08 -7.90 -38.97 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -6.33 Total: 3.36 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: -1.90 Total: -16.97 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.16 Total: -39.75 kcal Atomic # 8 Polarization: -5.30 SS G_CDS: -0.38 Total: -5.68 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.04 Total: -2.12 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.07 -7.90 -38.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425975518.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.992 kcal (2) G-P(sol) polarization free energy of solvation -31.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds