Wall clock time and date at job start Tue Mar 31 2020 05:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42900 * 113.99736 * 2 1 4 4 C 1.53006 * 109.46696 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46791 * 185.64625 * 4 3 2 6 6 H 1.08998 * 109.47489 * 54.28770 * 5 4 3 7 7 C 1.53000 * 109.47297 * 294.28987 * 5 4 3 8 8 C 1.50700 * 109.47355 * 174.99818 * 7 5 4 9 9 C 1.38269 * 119.98280 * 89.99959 * 8 7 5 10 10 C 1.38226 * 120.05022 * 179.74333 * 9 8 7 11 11 C 1.38215 * 120.02384 * 0.26171 * 10 9 8 12 12 C 1.38434 * 119.97625 * 359.97438 * 11 10 9 13 13 F 1.35108 * 120.02755 * 179.97438 * 12 11 10 14 14 C 1.38175 * 119.98988 * 270.25695 * 8 7 5 15 15 N 1.46899 * 109.47077 * 174.29210 * 5 4 3 16 16 C 1.46900 * 110.99962 * 277.18637 * 15 5 4 17 17 C 1.50699 * 109.47067 * 175.50313 * 16 15 5 18 18 H 1.08000 * 119.99950 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00081 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00285 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99603 * 0.02562 * 19 17 16 22 22 H 1.48507 * 109.47092 * 90.00209 * 21 19 17 23 23 H 1.48503 * 109.46869 * 209.99653 * 21 19 17 24 24 H 1.48496 * 109.47379 * 330.00032 * 21 19 17 25 25 H 1.08996 * 109.47116 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47240 * 299.99983 * 1 2 3 27 27 H 1.08995 * 109.46822 * 60.00328 * 1 2 3 28 28 H 1.09000 * 109.47438 * 59.99960 * 3 2 1 29 29 H 1.08995 * 109.46998 * 299.99802 * 3 2 1 30 30 H 1.08998 * 109.46999 * 65.64963 * 4 3 2 31 31 H 1.08996 * 109.47234 * 305.64388 * 4 3 2 32 32 H 1.09006 * 109.47216 * 55.00133 * 7 5 4 33 33 H 1.09002 * 109.47140 * 295.00623 * 7 5 4 34 34 H 1.08001 * 119.97761 * 0.02854 * 9 8 7 35 35 H 1.07996 * 119.98432 * 180.27371 * 10 9 8 36 36 H 1.08001 * 120.01640 * 179.97438 * 11 10 9 37 37 H 1.07998 * 120.00936 * 359.97438 * 14 8 7 38 38 H 1.00902 * 111.00062 * 41.14042 * 15 5 4 39 39 H 1.09002 * 109.47156 * 295.50647 * 16 15 5 40 40 H 1.09001 * 109.46897 * 55.50499 * 16 15 5 41 41 H 0.96995 * 119.99913 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1572 2.5754 0.1426 6 1 3.7499 3.0671 1.0260 7 6 3.8330 3.4082 -1.0994 8 6 4.3390 4.8146 -0.9073 9 6 5.6214 5.1476 -1.3026 10 6 6.0851 6.4385 -1.1319 11 6 5.2689 7.3967 -0.5609 12 6 3.9865 7.0633 -0.1603 13 9 3.1879 7.9990 0.3985 14 6 3.5231 5.7696 -0.3314 15 7 5.6142 2.4488 0.2805 16 6 5.9878 2.1550 1.6705 17 6 7.4746 1.9233 1.7527 18 1 8.0813 1.9883 0.8616 19 6 8.0605 1.6295 2.9658 20 7 9.3581 1.4278 3.0377 21 14 7.0111 1.5179 4.5071 22 1 6.5337 0.1225 4.6810 23 1 7.8208 1.9147 5.6870 24 1 5.8445 2.4278 4.3787 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8463 -0.8900 30 1 3.8646 0.7334 -0.9354 31 1 3.8501 0.5591 0.8360 32 1 2.7539 3.4280 -1.2520 33 1 4.3150 2.9643 -1.9704 34 1 6.2598 4.3996 -1.7492 35 1 7.0855 6.6985 -1.4451 36 1 5.6315 8.4052 -0.4273 37 1 2.5227 5.5082 -0.0194 38 1 5.9772 1.7474 -0.3475 39 1 5.7157 2.9979 2.3058 40 1 5.4617 1.2617 2.0071 41 1 9.7702 1.2208 3.8910 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425975518.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:41 Heat of formation + Delta-G solvation = -98.454557 kcal Electronic energy + Delta-G solvation = -21869.469616 eV Core-core repulsion = 18469.498702 eV Total energy + Delta-G solvation = -3399.970914 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.82141 -40.28924 -39.08046 -37.84562 -35.12777 -33.44551 -32.42674 -31.32556 -29.51992 -27.89800 -27.09263 -24.56625 -23.59376 -23.18462 -22.56426 -21.41449 -18.94934 -18.24559 -17.49954 -17.10730 -17.00114 -16.89862 -16.65672 -16.52000 -16.16074 -15.47077 -15.37887 -15.00271 -14.72944 -14.58490 -14.31251 -14.21582 -13.85933 -13.49070 -13.19583 -12.91808 -12.76649 -12.63604 -12.46455 -12.35532 -12.21930 -11.90597 -11.73942 -11.71412 -11.67337 -11.41240 -10.81561 -10.57565 -9.78770 -9.43911 -9.07692 -8.29619 -6.32010 0.36255 0.39552 1.31996 1.33989 1.44134 2.32675 2.74856 2.85508 3.05464 3.34367 3.52248 3.82282 3.95068 3.98031 4.16250 4.19286 4.38011 4.43194 4.45699 4.50387 4.52811 4.54286 4.56775 4.63492 4.77566 4.85319 4.89208 4.94995 5.00760 5.10351 5.19439 5.25173 5.28956 5.34698 5.53531 5.55349 5.76054 5.98976 6.10964 6.26274 6.57263 6.69828 6.82535 7.32850 8.86876 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.008447 B = 0.006619 C = 0.004271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3314.003407 B = 4229.114668 C = 6553.973255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.423 6.423 3 C 0.066 3.934 4 C -0.143 4.143 5 C 0.097 3.903 6 H 0.064 0.936 7 C -0.064 4.064 8 C -0.041 4.041 9 C -0.105 4.105 10 C -0.100 4.100 11 C -0.168 4.168 12 C 0.070 3.930 13 F -0.152 7.152 14 C -0.162 4.162 15 N -0.668 5.668 16 C 0.179 3.821 17 C -0.519 4.519 18 H 0.044 0.956 19 C 0.011 3.989 20 N -0.946 5.946 21 Si 0.940 3.060 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.254 1.254 25 H 0.093 0.907 26 H 0.046 0.954 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.047 0.953 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.131 0.869 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.339 0.661 39 H 0.015 0.985 40 H -0.017 1.017 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.788 5.810 -9.709 21.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.342 6.342 3 C -0.011 4.011 4 C -0.182 4.182 5 C -0.014 4.014 6 H 0.083 0.917 7 C -0.102 4.102 8 C -0.042 4.042 9 C -0.124 4.124 10 C -0.118 4.118 11 C -0.186 4.186 12 C 0.051 3.949 13 F -0.131 7.131 14 C -0.181 4.181 15 N -0.297 5.297 16 C 0.050 3.950 17 C -0.558 4.558 18 H 0.062 0.938 19 C -0.186 4.186 20 N -0.587 5.587 21 Si 0.765 3.235 22 H -0.193 1.193 23 H -0.208 1.208 24 H -0.178 1.178 25 H 0.112 0.888 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.066 0.934 32 H 0.117 0.883 33 H 0.107 0.893 34 H 0.149 0.851 35 H 0.163 0.837 36 H 0.162 0.838 37 H 0.162 0.838 38 H 0.157 0.843 39 H 0.033 0.967 40 H 0.000 1.000 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.460 6.333 -9.500 20.861 hybrid contribution -0.285 -0.682 1.293 1.489 sum -17.745 5.651 -8.207 20.351 Atomic orbital electron populations 1.22922 0.79541 1.03700 1.00953 1.87861 1.21557 1.29198 1.95627 1.22616 0.92838 0.84317 1.01300 1.22234 0.94792 0.98403 1.02799 1.21525 0.88144 0.93400 0.98326 0.91724 1.20742 1.01869 0.89863 0.97715 1.19719 0.93615 0.95239 0.95583 1.21298 0.95333 0.96252 0.99472 1.21269 1.00114 0.92766 0.97612 1.21289 0.92877 1.01958 1.02521 1.17883 0.90070 0.86943 1.00019 1.91445 1.73497 1.64821 1.83371 1.21159 1.02133 0.91511 1.03309 1.60563 1.09497 1.52827 1.06805 1.19693 0.93855 0.93423 0.88042 1.21337 0.92884 1.46579 0.94958 0.93789 1.25764 0.95946 0.94611 1.02314 1.70036 1.11661 1.50179 1.26783 0.85815 0.79388 0.79316 0.79019 1.19348 1.20780 1.17823 0.88824 0.93526 0.92557 0.93171 0.90655 0.90300 0.93397 0.88281 0.89345 0.85113 0.83684 0.83816 0.83833 0.84309 0.96653 0.99952 0.92505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 11.01 113.37 1.25 1.66 16 2 O -0.42 -10.45 10.70 -148.98 -1.59 -12.05 16 3 C 0.07 1.44 5.57 71.98 0.40 1.84 16 4 C -0.14 -3.78 5.05 30.60 0.15 -3.63 16 5 C 0.10 2.73 2.03 44.92 0.09 2.82 16 6 H 0.06 1.97 7.89 -2.39 -0.02 1.95 16 7 C -0.06 -1.41 4.90 29.85 0.15 -1.26 16 8 C -0.04 -1.06 4.95 -19.87 -0.10 -1.16 16 9 C -0.11 -2.86 9.31 22.27 0.21 -2.66 16 10 C -0.10 -2.55 10.04 22.26 0.22 -2.33 16 11 C -0.17 -4.29 10.03 22.31 0.22 -4.07 16 12 C 0.07 1.90 7.30 22.37 0.16 2.07 16 13 F -0.15 -4.24 17.27 44.97 0.78 -3.47 16 14 C -0.16 -4.13 9.68 22.31 0.22 -3.92 16 15 N -0.67 -24.63 5.64 -495.58 -2.80 -27.43 16 16 C 0.18 8.30 4.32 85.56 0.37 8.67 16 17 C -0.52 -29.46 9.82 25.60 0.25 -29.21 16 18 H 0.04 2.73 8.06 -2.91 -0.02 2.71 16 19 C 0.01 0.66 5.47 84.65 0.46 1.12 16 20 N -0.95 -58.96 13.96 21.45 0.30 -58.66 16 21 Si 0.94 44.68 27.47 68.60 1.88 46.56 16 22 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 23 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 24 H -0.25 -11.46 6.54 99.48 0.65 -10.81 16 25 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.08 1.25 6.76 -2.39 -0.02 1.24 16 30 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.05 1.55 7.14 -2.39 -0.02 1.53 16 32 H 0.10 1.62 6.44 -2.38 -0.02 1.61 16 33 H 0.09 1.78 8.09 -2.39 -0.02 1.76 16 34 H 0.13 3.52 8.06 -2.91 -0.02 3.49 16 35 H 0.15 3.11 8.06 -2.91 -0.02 3.08 16 36 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 37 H 0.14 3.04 8.06 -2.91 -0.02 3.01 16 38 H 0.34 12.31 8.45 -89.69 -0.76 11.55 16 39 H 0.02 0.75 7.19 -2.39 -0.02 0.73 16 40 H -0.02 -0.79 6.55 -2.39 -0.02 -0.81 16 41 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -67.47 343.08 2.83 -64.64 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: 0.20 Total: 20.46 kcal Atomic # 6 Polarization: -34.12 SS G_CDS: 4.06 Total: -30.06 kcal Atomic # 7 Polarization: -83.60 SS G_CDS: -2.50 Total: -86.09 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: -1.59 Total: -12.05 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 0.78 Total: -3.47 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.88 Total: 46.56 kcal Total: -67.47 2.83 -64.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425975518.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.813 kcal (2) G-P(sol) polarization free energy of solvation -67.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds