Wall clock time and date at job start Tue Mar 31 2020 05:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35960 * 116.99975 * 2 1 4 4 C 1.38663 * 120.06214 * 359.97438 * 3 2 1 5 5 C 1.38177 * 119.96783 * 180.26021 * 4 3 2 6 6 C 1.38262 * 120.09816 * 359.43674 * 5 4 3 7 7 C 1.50696 * 119.94233 * 180.30662 * 6 5 4 8 8 C 1.53007 * 109.46929 * 270.25794 * 7 6 5 9 9 H 1.09003 * 109.47007 * 304.99627 * 8 7 6 10 10 C 1.52994 * 109.47191 * 64.99588 * 8 7 6 11 11 C 1.53003 * 109.46949 * 184.99608 * 8 7 6 12 12 N 1.46902 * 109.46842 * 174.99821 * 11 8 7 13 13 C 1.46900 * 110.99931 * 180.02562 * 12 11 8 14 14 C 1.50695 * 109.47463 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99326 * 0.02562 * 14 13 12 16 16 C 1.37872 * 120.00305 * 179.97438 * 14 13 12 17 17 N 1.31511 * 119.99774 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00171 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46871 * 0.02562 * 18 16 14 20 20 H 1.48494 * 109.47131 * 119.99977 * 18 16 14 21 21 H 1.48497 * 109.47493 * 240.00444 * 18 16 14 22 22 C 1.38262 * 120.12232 * 0.56250 * 6 5 4 23 23 C 1.38334 * 120.03067 * 359.72038 * 22 6 5 24 24 F 1.35102 * 120.04670 * 180.02562 * 23 22 6 25 25 H 1.08998 * 109.47444 * 300.00189 * 1 2 3 26 26 H 1.09007 * 109.47147 * 60.00331 * 1 2 3 27 27 H 1.09001 * 109.47089 * 179.97438 * 1 2 3 28 28 H 1.08002 * 120.01219 * 359.97438 * 4 3 2 29 29 H 1.08003 * 119.95063 * 179.72337 * 5 4 3 30 30 H 1.09002 * 109.47192 * 30.25004 * 7 6 5 31 31 H 1.08995 * 109.47616 * 150.25709 * 7 6 5 32 32 H 1.09003 * 109.47112 * 60.00104 * 10 8 7 33 33 H 1.09002 * 109.47442 * 179.97438 * 10 8 7 34 34 H 1.09004 * 109.47584 * 300.00368 * 10 8 7 35 35 H 1.08994 * 109.47080 * 294.99772 * 11 8 7 36 36 H 1.09005 * 109.46875 * 55.00296 * 11 8 7 37 37 H 1.00898 * 110.99829 * 56.04859 * 12 11 8 38 38 H 1.09001 * 109.46975 * 300.00509 * 13 12 11 39 39 H 1.08999 * 109.47005 * 59.99938 * 13 12 11 40 40 H 0.97007 * 119.99870 * 179.97438 * 17 16 14 41 41 H 1.07998 * 119.98514 * 179.74420 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2922 2.3752 -0.0005 5 6 1.9215 3.6053 -0.0060 6 6 3.3022 3.6778 0.0009 7 6 3.9849 5.0213 0.0019 8 6 4.2174 5.4762 -1.4403 9 1 4.7716 4.7075 -1.9789 10 6 2.8693 5.7077 -2.1257 11 6 5.0202 6.7788 -1.4410 12 7 5.3463 7.1522 -2.8238 13 6 6.1192 8.4007 -2.8636 14 6 6.4339 8.7514 -4.2950 15 1 6.0934 8.1109 -5.0952 16 6 7.1556 9.8902 -4.5832 17 7 7.5699 10.6703 -3.6088 18 14 7.5463 10.3245 -6.3575 19 1 6.9721 9.2923 -7.2577 20 1 6.9580 11.6482 -6.6842 21 1 9.0189 10.3783 -6.5413 22 6 4.0579 2.5199 0.0015 23 6 3.4333 1.2856 0.0010 24 9 4.1713 0.1540 0.0021 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2136 2.3200 -0.0014 29 1 1.3340 4.5115 -0.0109 30 1 3.3554 5.7483 0.5151 31 1 4.9423 4.9420 0.5167 32 1 2.3151 6.4764 -1.5871 33 1 3.0349 6.0322 -3.1530 34 1 2.2973 4.7798 -2.1252 35 1 4.4288 7.5702 -0.9808 36 1 5.9415 6.6380 -0.8758 37 1 4.5110 7.2256 -3.3851 38 1 5.5359 9.2037 -2.4130 39 1 7.0481 8.2708 -2.3084 40 1 8.0780 11.4714 -3.8115 41 1 5.1362 2.5791 0.0026 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425983663.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:03 Heat of formation + Delta-G solvation = -76.358768 kcal Electronic energy + Delta-G solvation = -21165.320687 eV Core-core repulsion = 17766.307919 eV Total energy + Delta-G solvation = -3399.012768 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.89671 -40.33848 -38.44179 -36.50279 -33.89514 -32.17239 -31.00938 -30.29686 -27.98474 -26.99478 -26.38557 -24.13989 -22.96932 -21.85580 -21.10138 -19.74086 -18.53650 -17.11070 -16.96347 -16.45440 -16.36653 -15.29639 -15.24510 -14.99661 -14.73979 -14.58610 -14.42766 -14.06332 -13.63001 -13.23395 -12.93504 -12.66657 -12.44287 -12.29242 -12.17159 -11.82173 -11.62310 -11.46927 -11.28900 -11.22426 -10.94802 -10.79205 -10.54243 -10.39166 -10.34960 -9.84574 -9.17041 -9.08900 -8.47758 -8.27653 -7.26262 -6.02683 -4.04455 0.92114 1.02498 2.84735 3.31392 3.32931 3.38604 3.43917 4.01533 4.42483 4.43420 4.51837 4.68603 4.77322 4.89725 5.03236 5.07281 5.12119 5.16208 5.25181 5.33334 5.35839 5.55580 5.64423 5.75039 5.79811 5.88721 5.92478 5.97139 6.15771 6.16881 6.31232 6.35354 6.43585 6.57216 6.64677 7.00286 7.27643 7.43772 7.80144 8.14414 8.42068 8.64112 9.05386 9.60592 11.08512 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.034255 B = 0.002596 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.204438 B =10781.334072 C =10843.809884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.313 6.313 3 C 0.084 3.916 4 C -0.180 4.180 5 C -0.085 4.085 6 C -0.076 4.076 7 C -0.075 4.075 8 C -0.084 4.084 9 H 0.079 0.921 10 C -0.151 4.151 11 C 0.064 3.936 12 N -0.691 5.691 13 C 0.193 3.807 14 C -0.513 4.513 15 H 0.062 0.938 16 C 0.054 3.946 17 N -0.898 5.898 18 Si 0.899 3.101 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.284 1.284 22 C -0.113 4.113 23 C 0.071 3.929 24 F -0.134 7.134 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.101 0.899 28 H 0.136 0.864 29 H 0.132 0.868 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.018 0.982 36 H 0.063 0.937 37 H 0.328 0.672 38 H -0.015 1.015 39 H 0.027 0.973 40 H 0.261 0.739 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.520 -17.974 10.292 25.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.226 6.226 3 C 0.038 3.962 4 C -0.199 4.199 5 C -0.104 4.104 6 C -0.076 4.076 7 C -0.113 4.113 8 C -0.103 4.103 9 H 0.097 0.903 10 C -0.208 4.208 11 C -0.066 4.066 12 N -0.322 5.322 13 C 0.066 3.934 14 C -0.551 4.551 15 H 0.081 0.919 16 C -0.147 4.147 17 N -0.538 5.538 18 Si 0.727 3.273 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.132 4.132 23 C 0.051 3.949 24 F -0.113 7.113 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.119 0.881 28 H 0.153 0.847 29 H 0.150 0.850 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.036 0.964 36 H 0.082 0.918 37 H 0.145 0.855 38 H 0.003 0.997 39 H 0.045 0.955 40 H 0.070 0.930 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -14.744 -18.442 10.292 25.757 hybrid contribution -0.534 0.940 -0.684 1.279 sum -15.279 -17.503 9.608 25.141 Atomic orbital electron populations 1.23093 0.78076 1.04140 1.01477 1.86124 1.21599 1.25967 1.88954 1.18981 0.90810 0.85571 1.00818 1.21109 1.00134 0.91487 1.07184 1.20958 0.94071 0.97192 0.98145 1.19719 0.93254 0.95068 0.99553 1.20675 1.00505 0.92098 0.98011 1.21157 0.96622 0.98559 0.93987 0.90255 1.21923 0.96694 1.00977 1.01199 1.21914 0.97888 0.94192 0.92617 1.60684 1.25119 1.38361 1.08062 1.19549 0.92700 0.83771 0.97334 1.21236 1.34196 1.07295 0.92422 0.91947 1.24999 0.95909 0.96242 0.97523 1.69975 1.37950 1.14469 1.31402 0.86431 0.78054 0.78145 0.84719 1.19648 1.21117 1.20980 1.20976 1.01264 0.89654 1.01268 1.16966 0.85898 0.82991 1.09071 1.91495 1.76436 1.49074 1.94301 0.92515 0.92435 0.88075 0.84657 0.84965 0.90709 0.90528 0.93153 0.91983 0.92835 0.96429 0.91839 0.85470 0.99702 0.95471 0.92987 0.83853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.36 10.36 -19.61 -0.20 -3.57 16 3 C 0.08 0.94 6.69 -39.18 -0.26 0.68 16 4 C -0.18 -1.64 9.04 -39.45 -0.36 -2.00 16 5 C -0.09 -0.80 7.93 -39.59 -0.31 -1.11 16 6 C -0.08 -0.79 4.72 -104.61 -0.49 -1.29 16 7 C -0.08 -0.81 4.84 -27.88 -0.13 -0.94 16 8 C -0.08 -1.13 2.58 -90.62 -0.23 -1.36 16 9 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 10 C -0.15 -1.86 8.52 37.15 0.32 -1.55 16 11 C 0.06 1.10 5.14 -3.82 -0.02 1.08 16 12 N -0.69 -14.81 6.49 -115.06 -0.75 -15.56 16 13 C 0.19 5.11 5.44 -4.98 -0.03 5.09 16 14 C -0.51 -14.68 9.32 -34.44 -0.32 -15.01 16 15 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 16 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 17 N -0.90 -27.03 13.29 55.43 0.74 -26.30 16 18 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 19 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 C -0.11 -1.26 9.67 -39.54 -0.38 -1.64 16 23 C 0.07 0.87 7.31 -39.30 -0.29 0.58 16 24 F -0.13 -1.82 17.11 2.25 0.04 -1.78 16 25 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 26 H 0.06 0.29 7.66 -51.92 -0.40 -0.11 16 27 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.14 0.88 6.30 -52.49 -0.33 0.55 16 29 H 0.13 1.02 8.02 -52.48 -0.42 0.60 16 30 H 0.07 0.74 8.09 -51.93 -0.42 0.32 16 31 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.85 6.68 -51.93 -0.35 0.50 16 34 H 0.05 0.59 6.25 -51.93 -0.32 0.27 16 35 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.33 6.70 6.98 -39.29 -0.27 6.42 16 38 H -0.01 -0.41 8.14 -51.93 -0.42 -0.84 16 39 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 341.48 15.07 5.15 5.15 Total: -1.00 -31.93 341.48 -7.93 -39.86 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -6.26 Total: 0.25 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: -1.62 Total: -14.85 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: -0.01 Total: -41.85 kcal Atomic # 8 Polarization: -3.36 SS G_CDS: -0.20 Total: -3.57 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.93 -7.93 -39.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425983663.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.499 kcal (2) G-P(sol) polarization free energy of solvation -31.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds