Wall clock time and date at job start Tue Mar 31 2020 05:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35960 * 116.99975 * 2 1 4 4 C 1.38663 * 120.06214 * 359.97438 * 3 2 1 5 5 C 1.38177 * 119.96783 * 180.26021 * 4 3 2 6 6 C 1.38262 * 120.09816 * 359.43674 * 5 4 3 7 7 C 1.50696 * 119.94233 * 180.30662 * 6 5 4 8 8 C 1.53007 * 109.46929 * 270.25794 * 7 6 5 9 9 H 1.09003 * 109.47007 * 304.99627 * 8 7 6 10 10 C 1.52994 * 109.47191 * 64.99588 * 8 7 6 11 11 C 1.53003 * 109.46949 * 184.99608 * 8 7 6 12 12 N 1.46902 * 109.46842 * 174.99821 * 11 8 7 13 13 C 1.46900 * 110.99931 * 180.02562 * 12 11 8 14 14 C 1.50695 * 109.47463 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99326 * 0.02562 * 14 13 12 16 16 C 1.37872 * 120.00305 * 179.97438 * 14 13 12 17 17 N 1.31511 * 119.99774 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00171 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46871 * 0.02562 * 18 16 14 20 20 H 1.48494 * 109.47131 * 119.99977 * 18 16 14 21 21 H 1.48497 * 109.47493 * 240.00444 * 18 16 14 22 22 C 1.38262 * 120.12232 * 0.56250 * 6 5 4 23 23 C 1.38334 * 120.03067 * 359.72038 * 22 6 5 24 24 F 1.35102 * 120.04670 * 180.02562 * 23 22 6 25 25 H 1.08998 * 109.47444 * 300.00189 * 1 2 3 26 26 H 1.09007 * 109.47147 * 60.00331 * 1 2 3 27 27 H 1.09001 * 109.47089 * 179.97438 * 1 2 3 28 28 H 1.08002 * 120.01219 * 359.97438 * 4 3 2 29 29 H 1.08003 * 119.95063 * 179.72337 * 5 4 3 30 30 H 1.09002 * 109.47192 * 30.25004 * 7 6 5 31 31 H 1.08995 * 109.47616 * 150.25709 * 7 6 5 32 32 H 1.09003 * 109.47112 * 60.00104 * 10 8 7 33 33 H 1.09002 * 109.47442 * 179.97438 * 10 8 7 34 34 H 1.09004 * 109.47584 * 300.00368 * 10 8 7 35 35 H 1.08994 * 109.47080 * 294.99772 * 11 8 7 36 36 H 1.09005 * 109.46875 * 55.00296 * 11 8 7 37 37 H 1.00898 * 110.99829 * 56.04859 * 12 11 8 38 38 H 1.09001 * 109.46975 * 300.00509 * 13 12 11 39 39 H 1.08999 * 109.47005 * 59.99938 * 13 12 11 40 40 H 0.97007 * 119.99870 * 179.97438 * 17 16 14 41 41 H 1.07998 * 119.98514 * 179.74420 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2922 2.3752 -0.0005 5 6 1.9215 3.6053 -0.0060 6 6 3.3022 3.6778 0.0009 7 6 3.9849 5.0213 0.0019 8 6 4.2174 5.4762 -1.4403 9 1 4.7716 4.7075 -1.9789 10 6 2.8693 5.7077 -2.1257 11 6 5.0202 6.7788 -1.4410 12 7 5.3463 7.1522 -2.8238 13 6 6.1192 8.4007 -2.8636 14 6 6.4339 8.7514 -4.2950 15 1 6.0934 8.1109 -5.0952 16 6 7.1556 9.8902 -4.5832 17 7 7.5699 10.6703 -3.6088 18 14 7.5463 10.3245 -6.3575 19 1 6.9721 9.2923 -7.2577 20 1 6.9580 11.6482 -6.6842 21 1 9.0189 10.3783 -6.5413 22 6 4.0579 2.5199 0.0015 23 6 3.4333 1.2856 0.0010 24 9 4.1713 0.1540 0.0021 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2136 2.3200 -0.0014 29 1 1.3340 4.5115 -0.0109 30 1 3.3554 5.7483 0.5151 31 1 4.9423 4.9420 0.5167 32 1 2.3151 6.4764 -1.5871 33 1 3.0349 6.0322 -3.1530 34 1 2.2973 4.7798 -2.1252 35 1 4.4288 7.5702 -0.9808 36 1 5.9415 6.6380 -0.8758 37 1 4.5110 7.2256 -3.3851 38 1 5.5359 9.2037 -2.4130 39 1 7.0481 8.2708 -2.3084 40 1 8.0780 11.4714 -3.8115 41 1 5.1362 2.5791 0.0026 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425983663.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:03 Heat of formation + Delta-G solvation = -96.140026 kcal Electronic energy + Delta-G solvation = -21166.178467 eV Core-core repulsion = 17766.307919 eV Total energy + Delta-G solvation = -3399.870548 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.83586 -41.09019 -39.30488 -37.79480 -35.56433 -33.98963 -31.79624 -31.33419 -28.94235 -28.42787 -27.39086 -25.62050 -23.74577 -23.51779 -22.32950 -20.86437 -19.26572 -18.58208 -17.90131 -17.79545 -17.15449 -16.89904 -16.47768 -16.04812 -15.78705 -15.56794 -15.43819 -15.15853 -14.92660 -14.62448 -14.15942 -13.94189 -13.72205 -13.35456 -13.08434 -13.03368 -12.85404 -12.68093 -12.61470 -12.52426 -12.15637 -12.10992 -12.03729 -11.68187 -11.52913 -11.49176 -11.14567 -10.66746 -9.91192 -9.08832 -9.06966 -8.22719 -6.33888 0.13463 0.23134 1.41173 1.42155 1.56048 2.21839 2.40185 2.54086 3.10516 3.21985 3.55647 3.71707 3.84506 4.02094 4.09605 4.24344 4.29076 4.31590 4.38952 4.39619 4.54737 4.64385 4.72011 4.75762 4.89105 4.91926 4.98556 5.01089 5.07722 5.12946 5.16892 5.22157 5.29386 5.44433 5.46323 5.60940 5.65716 5.69469 6.03611 6.30777 6.47849 6.75947 6.91681 7.37342 8.89095 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.034255 B = 0.002596 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.204438 B =10781.334072 C =10843.809884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.338 6.338 3 C 0.078 3.922 4 C -0.174 4.174 5 C -0.079 4.079 6 C -0.083 4.083 7 C -0.067 4.067 8 C -0.073 4.073 9 H 0.065 0.935 10 C -0.147 4.147 11 C 0.063 3.937 12 N -0.692 5.692 13 C 0.207 3.793 14 C -0.535 4.535 15 H 0.063 0.937 16 C 0.000 4.000 17 N -0.934 5.934 18 Si 0.974 3.026 19 H -0.263 1.263 20 H -0.276 1.276 21 H -0.278 1.278 22 C -0.119 4.119 23 C 0.038 3.962 24 F -0.150 7.150 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.117 0.883 28 H 0.166 0.834 29 H 0.157 0.843 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.045 0.955 34 H 0.070 0.930 35 H 0.021 0.979 36 H 0.055 0.945 37 H 0.335 0.665 38 H -0.039 1.039 39 H -0.002 1.002 40 H 0.265 0.735 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.534 -18.142 9.790 27.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.252 6.252 3 C 0.032 3.968 4 C -0.193 4.193 5 C -0.097 4.097 6 C -0.083 4.083 7 C -0.105 4.105 8 C -0.092 4.092 9 H 0.084 0.916 10 C -0.205 4.205 11 C -0.066 4.066 12 N -0.324 5.324 13 C 0.079 3.921 14 C -0.574 4.574 15 H 0.081 0.919 16 C -0.198 4.198 17 N -0.574 5.574 18 Si 0.798 3.202 19 H -0.187 1.187 20 H -0.202 1.202 21 H -0.204 1.204 22 C -0.137 4.137 23 C 0.018 3.982 24 F -0.129 7.129 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.135 0.865 28 H 0.184 0.816 29 H 0.174 0.826 30 H 0.109 0.891 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.039 0.961 36 H 0.073 0.927 37 H 0.153 0.847 38 H -0.021 1.021 39 H 0.016 0.984 40 H 0.074 0.926 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -16.782 -18.633 9.799 26.923 hybrid contribution 0.028 0.941 -0.465 1.050 sum -16.754 -17.693 9.334 26.093 Atomic orbital electron populations 1.23424 0.75723 1.05808 1.02773 1.86099 1.24125 1.26110 1.88856 1.19185 0.90586 0.86561 1.00442 1.21424 1.01531 0.90486 1.05811 1.21263 0.93609 0.98260 0.96543 1.19690 0.93921 0.94274 1.00434 1.20570 1.01141 0.92694 0.96055 1.21014 0.96454 0.95754 0.96010 0.91632 1.21899 0.96183 1.02215 1.00165 1.22015 0.98325 0.96271 0.90004 1.60557 1.25518 1.35391 1.10919 1.19199 0.91776 0.85099 0.95978 1.21586 1.34681 1.07785 0.93301 0.91852 1.25970 0.95456 0.95997 1.02410 1.70098 1.38462 1.14989 1.33900 0.85270 0.77926 0.78181 0.78829 1.18682 1.20159 1.20417 1.21062 1.01562 0.89789 1.01326 1.17308 0.86804 0.82869 1.11215 1.91441 1.76935 1.49897 1.94665 0.90980 0.91214 0.86459 0.81645 0.82571 0.89100 0.90470 0.91914 0.93587 0.91106 0.96083 0.92670 0.84652 1.02120 0.98398 0.92599 0.83830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.34 -6.88 10.36 -93.10 -0.96 -7.84 16 3 C 0.08 1.65 6.69 22.53 0.15 1.80 16 4 C -0.17 -2.66 9.04 22.36 0.20 -2.46 16 5 C -0.08 -1.23 7.93 22.26 0.18 -1.05 16 6 C -0.08 -1.59 4.72 -19.85 -0.09 -1.69 16 7 C -0.07 -1.33 4.84 29.85 0.14 -1.18 16 8 C -0.07 -1.88 2.58 -10.79 -0.03 -1.91 16 9 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 10 C -0.15 -3.33 8.52 71.98 0.61 -2.72 16 11 C 0.06 2.17 5.14 86.30 0.44 2.61 16 12 N -0.69 -30.01 6.49 -517.93 -3.36 -33.37 16 13 C 0.21 11.30 5.44 85.56 0.47 11.76 16 14 C -0.54 -30.98 9.32 25.60 0.24 -30.74 16 15 H 0.06 3.57 7.81 -2.91 -0.02 3.55 16 16 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 17 N -0.93 -56.89 13.29 21.45 0.28 -56.60 16 18 Si 0.97 44.59 29.54 68.60 2.03 46.62 16 19 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 20 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 21 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 22 C -0.12 -2.62 9.67 22.30 0.22 -2.41 16 23 C 0.04 0.93 7.31 22.45 0.16 1.09 16 24 F -0.15 -4.23 17.11 44.97 0.77 -3.46 16 25 H 0.07 0.47 7.66 -2.39 -0.02 0.45 16 26 H 0.07 0.50 7.66 -2.38 -0.02 0.48 16 27 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.17 1.45 6.30 -2.91 -0.02 1.43 16 29 H 0.16 1.69 8.02 -2.91 -0.02 1.67 16 30 H 0.09 1.54 8.09 -2.39 -0.02 1.52 16 31 H 0.08 1.53 8.08 -2.39 -0.02 1.51 16 32 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.05 1.19 6.68 -2.39 -0.02 1.17 16 34 H 0.07 1.36 6.25 -2.38 -0.01 1.35 16 35 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 37 H 0.34 13.69 6.98 -89.70 -0.63 13.07 16 38 H -0.04 -2.26 8.14 -2.39 -0.02 -2.28 16 39 H 0.00 -0.13 8.14 -2.39 -0.02 -0.14 16 40 H 0.27 15.06 8.31 -92.70 -0.77 14.29 16 41 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -69.86 341.48 3.42 -66.44 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: 0.39 Total: 13.39 kcal Atomic # 6 Polarization: -29.44 SS G_CDS: 4.27 Total: -25.17 kcal Atomic # 7 Polarization: -86.89 SS G_CDS: -3.08 Total: -89.97 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -0.96 Total: -7.84 kcal Atomic # 9 Polarization: -4.23 SS G_CDS: 0.77 Total: -3.46 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -69.86 3.42 -66.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425983663.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.698 kcal (2) G-P(sol) polarization free energy of solvation -69.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds