Wall clock time and date at job start Tue Mar 31 2020 05:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35952 * 116.99879 * 2 1 4 4 C 1.38661 * 120.06409 * 0.02562 * 3 2 1 5 5 C 1.38185 * 119.97094 * 179.97438 * 4 3 2 6 6 C 1.38263 * 120.09316 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.93622 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47447 * 90.00022 * 7 6 5 9 9 H 1.09002 * 109.46776 * 54.99568 * 8 7 6 10 10 C 1.52999 * 109.47035 * 295.00305 * 8 7 6 11 11 C 1.52990 * 109.47669 * 174.99988 * 8 7 6 12 12 N 1.46902 * 109.47431 * 185.00378 * 11 8 7 13 13 C 1.46895 * 110.99836 * 180.02562 * 12 11 8 14 14 C 1.50702 * 109.46887 * 179.97438 * 13 12 11 15 15 H 1.08006 * 120.00107 * 0.02562 * 14 13 12 16 16 C 1.37886 * 120.00215 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99649 * 359.97438 * 16 14 13 18 18 Si 1.86791 * 120.00002 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47427 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.47028 * 120.00171 * 18 16 14 21 21 H 1.48497 * 109.47571 * 239.99763 * 18 16 14 22 22 C 1.38258 * 120.12565 * 359.74506 * 6 5 4 23 23 C 1.38333 * 120.02900 * 0.50489 * 22 6 5 24 24 F 1.35104 * 120.04594 * 179.76884 * 23 22 6 25 25 H 1.09000 * 109.46833 * 299.99879 * 1 2 3 26 26 H 1.08998 * 109.47411 * 59.99381 * 1 2 3 27 27 H 1.08999 * 109.47507 * 180.02562 * 1 2 3 28 28 H 1.07996 * 120.01486 * 0.02562 * 4 3 2 29 29 H 1.07996 * 119.95415 * 180.02562 * 5 4 3 30 30 H 1.09004 * 109.47207 * 210.00307 * 7 6 5 31 31 H 1.08997 * 109.47358 * 329.99994 * 7 6 5 32 32 H 1.08997 * 109.47127 * 179.97438 * 10 8 7 33 33 H 1.09003 * 109.47090 * 299.99701 * 10 8 7 34 34 H 1.09002 * 109.47049 * 59.99774 * 10 8 7 35 35 H 1.09005 * 109.47077 * 305.00410 * 11 8 7 36 36 H 1.09000 * 109.46961 * 64.99688 * 11 8 7 37 37 H 1.00899 * 110.99826 * 303.95309 * 12 11 8 38 38 H 1.08999 * 109.47501 * 299.99591 * 13 12 11 39 39 H 1.09001 * 109.47514 * 59.99825 * 13 12 11 40 40 H 0.97003 * 119.99729 * 179.97438 * 17 16 14 41 41 H 1.07999 * 119.98393 * 180.27530 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2922 2.3751 0.0005 5 6 1.9216 3.6053 0.0011 6 6 3.3023 3.6777 0.0005 7 6 3.9849 5.0212 0.0005 8 6 4.2166 5.4757 1.4430 9 1 4.7704 4.7067 1.9817 10 6 2.8680 5.7068 2.1277 11 6 5.0193 6.7780 1.4448 12 7 5.3446 7.1509 2.8280 13 6 6.1165 8.4000 2.8688 14 6 6.4303 8.7500 4.3006 15 1 6.0907 8.1084 5.1003 16 6 7.1520 9.8888 4.5898 17 7 7.5668 10.6693 3.6160 18 14 7.5403 10.3229 6.3646 19 1 6.9657 9.2903 7.2639 20 1 9.0128 10.3765 6.5503 21 1 6.9519 11.6468 6.6906 22 6 4.0579 2.5199 0.0048 23 6 3.4332 1.2856 -0.0010 24 9 4.1713 0.1540 -0.0015 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 0.2137 2.3200 0.0014 29 1 1.3341 4.5115 0.0019 30 1 4.9428 4.9421 -0.5138 31 1 3.3559 5.7484 -0.5129 32 1 3.0330 6.0301 3.1554 33 1 2.3141 6.4757 1.5890 34 1 2.2961 4.7789 2.1264 35 1 5.9410 6.6376 0.8801 36 1 4.4283 7.5698 0.9844 37 1 4.5090 7.2241 3.3888 38 1 7.0458 8.2713 2.3139 39 1 5.5327 9.2029 2.4185 40 1 8.0742 11.4706 3.8194 41 1 5.1362 2.5791 0.0089 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425983664.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:05 Heat of formation + Delta-G solvation = -96.150105 kcal Electronic energy + Delta-G solvation = -21166.173770 eV Core-core repulsion = 17766.302785 eV Total energy + Delta-G solvation = -3399.870985 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.83522 -41.09056 -39.30504 -37.79562 -35.56383 -33.98941 -31.79512 -31.33554 -28.94207 -28.42876 -27.38971 -25.62114 -23.74674 -23.51717 -22.32958 -20.86368 -19.26609 -18.58218 -17.90083 -17.79556 -17.15482 -16.89808 -16.47811 -16.04800 -15.78708 -15.56879 -15.43901 -15.15869 -14.92497 -14.62458 -14.16043 -13.94260 -13.72092 -13.35426 -13.08468 -13.03325 -12.85357 -12.68045 -12.61461 -12.52332 -12.15831 -12.10990 -12.03767 -11.68173 -11.52962 -11.49179 -11.14596 -10.66677 -9.91176 -9.08858 -9.07058 -8.22749 -6.33864 0.13446 0.23161 1.41128 1.42176 1.56062 2.21820 2.40202 2.54099 3.10474 3.21994 3.55663 3.71718 3.84533 4.02111 4.09574 4.24351 4.29086 4.31639 4.38957 4.39619 4.54726 4.64359 4.72027 4.75784 4.89112 4.91951 4.98529 5.01103 5.07706 5.12941 5.16880 5.22134 5.29357 5.44425 5.46328 5.60949 5.65720 5.69462 6.03595 6.30773 6.47807 6.75952 6.91638 7.37296 8.89078 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.034249 B = 0.002597 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.334925 B =10781.122129 C =10843.317060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.338 6.338 3 C 0.078 3.922 4 C -0.174 4.174 5 C -0.079 4.079 6 C -0.083 4.083 7 C -0.067 4.067 8 C -0.073 4.073 9 H 0.065 0.935 10 C -0.147 4.147 11 C 0.063 3.937 12 N -0.692 5.692 13 C 0.207 3.793 14 C -0.535 4.535 15 H 0.063 0.937 16 C 0.000 4.000 17 N -0.934 5.934 18 Si 0.974 3.026 19 H -0.263 1.263 20 H -0.279 1.279 21 H -0.276 1.276 22 C -0.119 4.119 23 C 0.038 3.962 24 F -0.150 7.150 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.117 0.883 28 H 0.166 0.834 29 H 0.157 0.843 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.045 0.955 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.021 0.979 37 H 0.335 0.665 38 H -0.002 1.002 39 H -0.039 1.039 40 H 0.265 0.735 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.531 -18.138 -9.807 27.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.252 6.252 3 C 0.032 3.968 4 C -0.193 4.193 5 C -0.097 4.097 6 C -0.083 4.083 7 C -0.105 4.105 8 C -0.092 4.092 9 H 0.084 0.916 10 C -0.205 4.205 11 C -0.066 4.066 12 N -0.324 5.324 13 C 0.079 3.921 14 C -0.574 4.574 15 H 0.081 0.919 16 C -0.198 4.198 17 N -0.574 5.574 18 Si 0.798 3.202 19 H -0.187 1.187 20 H -0.204 1.204 21 H -0.201 1.201 22 C -0.137 4.137 23 C 0.018 3.982 24 F -0.129 7.129 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.135 0.865 28 H 0.184 0.816 29 H 0.174 0.826 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.039 0.961 37 H 0.153 0.847 38 H 0.016 0.984 39 H -0.021 1.021 40 H 0.074 0.926 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -16.778 -18.629 -9.816 26.924 hybrid contribution 0.029 0.940 0.465 1.049 sum -16.749 -17.690 -9.351 26.094 Atomic orbital electron populations 1.23424 0.75720 1.05809 1.02774 1.86099 1.24127 1.26110 1.88854 1.19181 0.90586 0.86562 1.00439 1.21424 1.01531 0.90487 1.05814 1.21264 0.93604 0.98257 0.96544 1.19689 0.93923 0.94273 1.00434 1.20570 1.01145 0.92696 0.96051 1.21011 0.96453 0.95757 0.96011 0.91632 1.21897 0.96178 1.02216 1.00163 1.22014 0.98330 0.96276 0.90001 1.60569 1.25523 1.35356 1.10915 1.19200 0.91786 0.85099 0.95979 1.21592 1.34701 1.07763 0.93300 0.91851 1.25975 0.95440 0.96008 1.02421 1.70098 1.38474 1.14959 1.33915 0.85269 0.77921 0.78184 0.78823 1.18680 1.20431 1.20149 1.21060 1.01565 0.89791 1.01322 1.17308 0.86804 0.82867 1.11218 1.91442 1.76937 1.49895 1.94666 0.91215 0.90978 0.86457 0.81647 0.82569 0.90473 0.89098 0.93587 0.91909 0.91121 0.92671 0.96082 0.84658 0.98401 1.02114 0.92600 0.83834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.34 -6.88 10.36 -93.01 -0.96 -7.84 16 3 C 0.08 1.65 6.69 22.53 0.15 1.81 16 4 C -0.17 -2.66 9.04 22.36 0.20 -2.46 16 5 C -0.08 -1.22 7.95 22.26 0.18 -1.05 16 6 C -0.08 -1.59 4.71 -19.85 -0.09 -1.69 16 7 C -0.07 -1.33 4.84 29.85 0.14 -1.18 16 8 C -0.07 -1.88 2.58 -10.80 -0.03 -1.91 16 9 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 10 C -0.15 -3.33 8.53 71.98 0.61 -2.72 16 11 C 0.06 2.16 5.14 86.30 0.44 2.61 16 12 N -0.69 -30.00 6.49 -517.95 -3.36 -33.36 16 13 C 0.21 11.29 5.44 85.56 0.47 11.75 16 14 C -0.54 -30.98 9.32 25.60 0.24 -30.75 16 15 H 0.06 3.57 7.81 -2.91 -0.02 3.55 16 16 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 17 N -0.93 -56.89 13.29 21.45 0.28 -56.60 16 18 Si 0.97 44.59 29.54 68.60 2.03 46.62 16 19 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 20 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 21 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 22 C -0.12 -2.62 9.67 22.30 0.22 -2.41 16 23 C 0.04 0.93 7.31 22.45 0.16 1.09 16 24 F -0.15 -4.24 17.11 44.97 0.77 -3.47 16 25 H 0.07 0.50 7.66 -2.39 -0.02 0.48 16 26 H 0.07 0.47 7.66 -2.39 -0.02 0.45 16 27 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.17 1.45 6.30 -2.91 -0.02 1.43 16 29 H 0.16 1.69 8.03 -2.91 -0.02 1.67 16 30 H 0.08 1.53 8.09 -2.39 -0.02 1.51 16 31 H 0.09 1.54 8.08 -2.39 -0.02 1.52 16 32 H 0.05 1.19 6.68 -2.39 -0.02 1.17 16 33 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.07 1.36 6.26 -2.39 -0.01 1.35 16 35 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 36 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.34 13.69 6.97 -89.70 -0.63 13.06 16 38 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 39 H -0.04 -2.25 8.14 -2.39 -0.02 -2.27 16 40 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 41 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -69.86 341.53 3.42 -66.44 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: 0.39 Total: 13.39 kcal Atomic # 6 Polarization: -29.45 SS G_CDS: 4.27 Total: -25.18 kcal Atomic # 7 Polarization: -86.89 SS G_CDS: -3.08 Total: -89.96 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -0.96 Total: -7.84 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 0.77 Total: -3.47 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -69.86 3.42 -66.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425983664.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.708 kcal (2) G-P(sol) polarization free energy of solvation -69.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds