Wall clock time and date at job start Tue Mar 31 2020 05:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50698 * 119.99797 * 2 1 4 4 N 1.46899 * 109.47025 * 125.00255 * 3 2 1 5 5 C 1.46904 * 110.99659 * 288.80755 * 4 3 2 6 6 C 1.50701 * 109.46639 * 160.78047 * 5 4 3 7 7 H 1.08006 * 120.00020 * 1.54309 * 6 5 4 8 8 C 1.37879 * 119.99928 * 181.54660 * 6 5 4 9 9 N 1.31510 * 119.99966 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 119.99783 * 359.97438 * 8 6 5 11 11 H 1.48494 * 109.47285 * 90.00355 * 10 8 6 12 12 H 1.48502 * 109.46985 * 210.00581 * 10 8 6 13 13 H 1.48501 * 109.47077 * 330.00124 * 10 8 6 14 14 C 1.46906 * 110.99681 * 164.85615 * 4 3 2 15 15 C 1.50695 * 109.47111 * 293.94915 * 14 4 3 16 16 C 1.39376 * 119.51070 * 270.29410 * 15 14 4 17 17 C 1.36089 * 120.98968 * 180.27941 * 16 15 14 18 18 C 1.40537 * 119.65687 * 359.71165 * 17 16 15 19 19 C 1.40538 * 121.28446 * 180.02562 * 18 17 16 20 20 C 1.36090 * 119.65406 * 180.02562 * 19 18 17 21 21 C 1.39380 * 120.98829 * 359.95786 * 20 19 18 22 22 C 1.36095 * 120.98858 * 0.02562 * 21 20 19 23 23 C 1.40533 * 119.65687 * 359.97438 * 22 21 20 24 24 C 1.36100 * 119.50258 * 90.00241 * 15 14 4 25 25 H 1.08001 * 120.00232 * 359.97438 * 1 2 3 26 26 H 1.08004 * 119.99636 * 179.97438 * 1 2 3 27 27 H 1.07992 * 119.99944 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.46977 * 4.99644 * 3 2 1 29 29 H 1.09006 * 109.46976 * 245.00430 * 3 2 1 30 30 H 1.09004 * 109.46807 * 280.77635 * 5 4 3 31 31 H 1.08992 * 109.47311 * 40.78100 * 5 4 3 32 32 H 0.97003 * 119.99813 * 180.02562 * 9 8 6 33 33 H 1.09005 * 109.46658 * 173.95279 * 14 4 3 34 34 H 1.08997 * 109.47361 * 53.95568 * 14 4 3 35 35 H 1.07998 * 119.50256 * 359.97438 * 16 15 14 36 36 H 1.07999 * 120.17326 * 179.73522 * 17 16 15 37 37 H 1.07994 * 120.17136 * 0.02562 * 19 18 17 38 38 H 1.08000 * 119.50765 * 179.97438 * 20 19 18 39 39 H 1.07999 * 119.50666 * 180.02562 * 21 20 19 40 40 H 1.07996 * 120.16934 * 180.02562 * 22 21 20 41 41 H 1.07999 * 120.16883 * 0.02584 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3320 1.1345 5 6 2.2744 1.4700 2.4064 6 6 3.1648 1.0294 3.5396 7 1 4.1751 0.7053 3.3380 8 6 2.6896 1.0401 4.8339 9 7 3.4667 0.6561 5.8229 10 14 0.9423 1.6012 5.1827 11 1 0.0258 0.4346 5.1195 12 1 0.8784 2.2083 6.5365 13 1 0.5339 2.6071 4.1695 14 6 3.9896 2.4024 0.9740 15 6 4.8720 2.0957 -0.2084 16 6 6.0350 1.3504 -0.0222 17 6 6.8566 1.0608 -1.0678 18 6 6.5273 1.5133 -2.3569 19 6 7.3507 1.2335 -3.4610 20 6 7.0002 1.6885 -4.6947 21 6 5.8342 2.4289 -4.8820 22 6 5.0127 2.7187 -3.8365 23 6 5.3415 2.2658 -2.5474 24 6 4.5183 2.5455 -1.4433 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9354 -0.0004 27 1 1.8500 -0.9352 -0.0004 28 1 1.3585 2.1316 0.0895 29 1 2.6212 1.4026 -0.9315 30 1 1.9902 2.5123 2.5516 31 1 1.3790 0.8488 2.3853 32 1 3.1323 0.6633 6.7334 33 1 4.5997 2.4699 1.8748 34 1 3.4783 3.3508 0.8096 35 1 6.2905 1.0018 0.9675 36 1 7.7567 0.4859 -0.9077 37 1 8.2567 0.6604 -3.3309 38 1 7.6349 1.4724 -5.5414 39 1 5.5789 2.7778 -5.8717 40 1 4.1122 3.2930 -3.9967 41 1 3.6119 3.1182 -1.5732 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428840141.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:58 Heat of formation + Delta-G solvation = 68.888351 kcal Electronic energy + Delta-G solvation = -21044.499118 eV Core-core repulsion = 18082.553962 eV Total energy + Delta-G solvation = -2961.945156 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.31205 -37.81081 -35.99796 -33.25234 -32.79653 -32.20858 -30.51123 -29.32316 -27.77304 -26.27692 -23.74367 -23.15617 -21.85211 -21.71506 -20.32549 -19.27482 -17.26054 -16.89789 -16.68340 -15.92596 -15.28757 -14.77016 -14.66351 -14.19302 -13.98879 -13.71546 -13.43415 -13.31859 -13.27298 -13.13421 -12.53711 -12.35368 -11.94678 -11.53731 -11.45593 -11.36599 -11.05980 -10.84116 -10.75656 -10.55808 -10.49062 -10.31005 -9.94498 -9.86163 -9.32663 -8.95013 -8.56245 -8.37531 -7.77344 -7.41985 -6.05402 -4.02109 0.63685 1.13107 2.16377 2.66984 3.10678 3.28330 3.35692 3.37562 4.20873 4.41958 4.64981 4.85786 4.87390 4.96952 5.09479 5.16557 5.26666 5.27943 5.39774 5.43250 5.49505 5.56620 5.65340 5.80073 5.87330 5.92454 6.04236 6.07374 6.17121 6.28408 6.30234 6.37188 6.44312 6.50524 6.70865 6.81382 6.85526 6.91503 6.95762 7.00347 7.11719 7.17119 7.61721 7.87284 7.97695 8.65045 9.03808 9.56863 11.07770 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.023110 B = 0.004229 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.299887 B = 6619.585035 C = 7366.488157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.119 4.119 3 C 0.067 3.933 4 N -0.515 5.515 5 C 0.162 3.838 6 C -0.506 4.506 7 H 0.081 0.919 8 C 0.069 3.931 9 N -0.900 5.900 10 Si 0.872 3.128 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.269 1.269 14 C 0.093 3.907 15 C -0.052 4.052 16 C -0.083 4.083 17 C -0.116 4.116 18 C -0.055 4.055 19 C -0.104 4.104 20 C -0.127 4.127 21 C -0.125 4.125 22 C -0.106 4.106 23 C -0.049 4.049 24 C -0.114 4.114 25 H 0.089 0.911 26 H 0.094 0.906 27 H 0.111 0.889 28 H 0.027 0.973 29 H 0.079 0.921 30 H -0.011 1.011 31 H 0.029 0.971 32 H 0.263 0.737 33 H 0.099 0.901 34 H 0.031 0.969 35 H 0.130 0.870 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.123 0.877 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.448 3.285 -19.199 19.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.137 4.137 3 C -0.061 4.061 4 N -0.239 5.239 5 C 0.036 3.964 6 C -0.544 4.544 7 H 0.099 0.901 8 C -0.132 4.132 9 N -0.539 5.539 10 Si 0.699 3.301 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.194 1.194 14 C -0.034 4.034 15 C -0.052 4.052 16 C -0.101 4.101 17 C -0.134 4.134 18 C -0.055 4.055 19 C -0.122 4.122 20 C -0.145 4.145 21 C -0.143 4.143 22 C -0.124 4.124 23 C -0.049 4.049 24 C -0.133 4.133 25 H 0.107 0.893 26 H 0.112 0.888 27 H 0.129 0.871 28 H 0.045 0.955 29 H 0.097 0.903 30 H 0.007 0.993 31 H 0.047 0.953 32 H 0.073 0.927 33 H 0.117 0.883 34 H 0.050 0.950 35 H 0.148 0.852 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.140 0.860 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.696 2.827 -18.959 19.522 hybrid contribution -1.454 0.923 0.358 1.759 sum 2.243 3.750 -18.601 19.107 Atomic orbital electron populations 1.23707 0.95988 1.01200 1.04087 1.22893 0.95320 0.98919 0.96581 1.21395 0.94497 0.94200 0.95963 1.61942 1.14953 1.44809 1.02204 1.20229 0.94626 0.94753 0.86796 1.21020 1.00919 1.43374 0.89118 0.90102 1.24872 0.97121 0.95032 0.96198 1.69888 1.36161 1.48209 0.99685 0.86914 0.85956 0.79506 0.77716 1.20134 1.21217 1.19354 1.21099 0.93960 0.92102 0.96277 1.19777 0.95035 0.95624 0.94777 1.20914 0.93415 0.96076 0.99694 1.21005 1.00081 1.00624 0.91680 1.18095 0.94785 0.98555 0.94035 1.21012 0.99115 0.99790 0.92323 1.20766 0.97330 0.99157 0.97226 1.20766 0.95221 0.99513 0.98800 1.21006 0.99594 0.99821 0.91947 1.18043 0.94754 0.98339 0.93780 1.20906 0.99106 1.01499 0.91796 0.89255 0.88781 0.87062 0.95488 0.90304 0.99328 0.95308 0.92697 0.88307 0.95043 0.85165 0.85729 0.85888 0.86439 0.86436 0.85951 0.86039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.23 14.32 29.01 0.42 -2.82 16 2 C -0.12 -2.01 8.71 -36.03 -0.31 -2.32 16 3 C 0.07 1.17 5.24 -4.98 -0.03 1.14 16 4 N -0.52 -10.52 4.37 -238.96 -1.04 -11.57 16 5 C 0.16 3.87 3.65 -4.97 -0.02 3.85 16 6 C -0.51 -14.12 9.12 -34.44 -0.31 -14.44 16 7 H 0.08 2.44 7.96 -52.48 -0.42 2.02 16 8 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 9 N -0.90 -27.33 13.96 55.43 0.77 -26.56 16 10 Si 0.87 21.47 27.44 -169.99 -4.66 16.81 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 13 H -0.27 -6.40 6.59 56.52 0.37 -6.03 16 14 C 0.09 1.70 4.92 -4.98 -0.02 1.68 16 15 C -0.05 -0.83 4.92 -104.97 -0.52 -1.34 16 16 C -0.08 -1.28 9.59 -39.93 -0.38 -1.66 16 17 C -0.12 -1.58 9.77 -39.49 -0.39 -1.97 16 18 C -0.05 -0.74 5.74 -106.83 -0.61 -1.35 16 19 C -0.10 -1.18 9.77 -39.49 -0.39 -1.57 16 20 C -0.13 -1.30 9.95 -39.93 -0.40 -1.69 16 21 C -0.12 -1.29 9.95 -39.93 -0.40 -1.69 16 22 C -0.11 -1.23 9.77 -39.49 -0.39 -1.61 16 23 C -0.05 -0.68 5.74 -106.83 -0.61 -1.29 16 24 C -0.11 -1.64 7.50 -39.48 -0.30 -1.94 16 25 H 0.09 1.29 7.84 -52.49 -0.41 0.88 16 26 H 0.09 1.28 8.06 -52.48 -0.42 0.86 16 27 H 0.11 1.90 8.06 -52.49 -0.42 1.48 16 28 H 0.03 0.46 7.71 -51.93 -0.40 0.06 16 29 H 0.08 1.26 5.15 -51.93 -0.27 0.99 16 30 H -0.01 -0.27 7.17 -51.93 -0.37 -0.64 16 31 H 0.03 0.71 6.44 -51.93 -0.33 0.37 16 32 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 33 H 0.10 1.99 7.28 -51.93 -0.38 1.61 16 34 H 0.03 0.54 8.05 -51.93 -0.42 0.13 16 35 H 0.13 2.06 8.06 -52.49 -0.42 1.64 16 36 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 37 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 38 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 41 H 0.12 1.57 7.72 -52.49 -0.41 1.16 16 LS Contribution 338.79 15.07 5.11 5.11 Total: -1.00 -30.60 338.79 -10.53 -41.13 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -5.95 Total: 2.21 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: -4.75 Total: -27.13 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: -0.27 Total: -38.12 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.66 Total: 16.81 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.60 -10.53 -41.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428840141.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.021 kcal (2) G-P(sol) polarization free energy of solvation -30.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds