Wall clock time and date at job start Tue Mar 31 2020 05:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50698 * 119.99797 * 2 1 4 4 N 1.46899 * 109.47025 * 125.00255 * 3 2 1 5 5 C 1.46904 * 110.99659 * 288.80755 * 4 3 2 6 6 C 1.50701 * 109.46639 * 160.78047 * 5 4 3 7 7 H 1.08006 * 120.00020 * 1.54309 * 6 5 4 8 8 C 1.37879 * 119.99928 * 181.54660 * 6 5 4 9 9 N 1.31510 * 119.99966 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 119.99783 * 359.97438 * 8 6 5 11 11 H 1.48494 * 109.47285 * 90.00355 * 10 8 6 12 12 H 1.48502 * 109.46985 * 210.00581 * 10 8 6 13 13 H 1.48501 * 109.47077 * 330.00124 * 10 8 6 14 14 C 1.46906 * 110.99681 * 164.85615 * 4 3 2 15 15 C 1.50695 * 109.47111 * 293.94915 * 14 4 3 16 16 C 1.39376 * 119.51070 * 270.29410 * 15 14 4 17 17 C 1.36089 * 120.98968 * 180.27941 * 16 15 14 18 18 C 1.40537 * 119.65687 * 359.71165 * 17 16 15 19 19 C 1.40538 * 121.28446 * 180.02562 * 18 17 16 20 20 C 1.36090 * 119.65406 * 180.02562 * 19 18 17 21 21 C 1.39380 * 120.98829 * 359.95786 * 20 19 18 22 22 C 1.36095 * 120.98858 * 0.02562 * 21 20 19 23 23 C 1.40533 * 119.65687 * 359.97438 * 22 21 20 24 24 C 1.36100 * 119.50258 * 90.00241 * 15 14 4 25 25 H 1.08001 * 120.00232 * 359.97438 * 1 2 3 26 26 H 1.08004 * 119.99636 * 179.97438 * 1 2 3 27 27 H 1.07992 * 119.99944 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.46977 * 4.99644 * 3 2 1 29 29 H 1.09006 * 109.46976 * 245.00430 * 3 2 1 30 30 H 1.09004 * 109.46807 * 280.77635 * 5 4 3 31 31 H 1.08992 * 109.47311 * 40.78100 * 5 4 3 32 32 H 0.97003 * 119.99813 * 180.02562 * 9 8 6 33 33 H 1.09005 * 109.46658 * 173.95279 * 14 4 3 34 34 H 1.08997 * 109.47361 * 53.95568 * 14 4 3 35 35 H 1.07998 * 119.50256 * 359.97438 * 16 15 14 36 36 H 1.07999 * 120.17326 * 179.73522 * 17 16 15 37 37 H 1.07994 * 120.17136 * 0.02562 * 19 18 17 38 38 H 1.08000 * 119.50765 * 179.97438 * 20 19 18 39 39 H 1.07999 * 119.50666 * 180.02562 * 21 20 19 40 40 H 1.07996 * 120.16934 * 180.02562 * 22 21 20 41 41 H 1.07999 * 120.16883 * 0.02584 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3320 1.1345 5 6 2.2744 1.4700 2.4064 6 6 3.1648 1.0294 3.5396 7 1 4.1751 0.7053 3.3380 8 6 2.6896 1.0401 4.8339 9 7 3.4667 0.6561 5.8229 10 14 0.9423 1.6012 5.1827 11 1 0.0258 0.4346 5.1195 12 1 0.8784 2.2083 6.5365 13 1 0.5339 2.6071 4.1695 14 6 3.9896 2.4024 0.9740 15 6 4.8720 2.0957 -0.2084 16 6 6.0350 1.3504 -0.0222 17 6 6.8566 1.0608 -1.0678 18 6 6.5273 1.5133 -2.3569 19 6 7.3507 1.2335 -3.4610 20 6 7.0002 1.6885 -4.6947 21 6 5.8342 2.4289 -4.8820 22 6 5.0127 2.7187 -3.8365 23 6 5.3415 2.2658 -2.5474 24 6 4.5183 2.5455 -1.4433 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9354 -0.0004 27 1 1.8500 -0.9352 -0.0004 28 1 1.3585 2.1316 0.0895 29 1 2.6212 1.4026 -0.9315 30 1 1.9902 2.5123 2.5516 31 1 1.3790 0.8488 2.3853 32 1 3.1323 0.6633 6.7334 33 1 4.5997 2.4699 1.8748 34 1 3.4783 3.3508 0.8096 35 1 6.2905 1.0018 0.9675 36 1 7.7567 0.4859 -0.9077 37 1 8.2567 0.6604 -3.3309 38 1 7.6349 1.4724 -5.5414 39 1 5.5789 2.7778 -5.8717 40 1 4.1122 3.2930 -3.9967 41 1 3.6119 3.1182 -1.5732 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428840141.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:57 Heat of formation + Delta-G solvation = 52.631516 kcal Electronic energy + Delta-G solvation = -21045.204067 eV Core-core repulsion = 18082.553962 eV Total energy + Delta-G solvation = -2962.650105 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.33239 -39.17253 -37.14760 -34.94991 -34.22328 -33.54337 -31.74476 -30.42277 -29.49967 -27.54467 -25.36052 -24.16147 -23.13260 -22.79952 -21.85086 -20.61052 -18.98020 -18.21894 -17.75508 -17.04604 -16.87725 -16.22762 -15.91179 -15.57089 -15.16953 -15.16363 -14.86511 -14.45268 -14.34996 -14.24146 -14.18597 -13.85145 -13.30047 -12.98834 -12.83317 -12.64755 -12.41404 -12.35794 -12.07879 -11.94743 -11.86169 -11.70049 -11.58725 -11.45957 -10.85551 -10.76777 -10.22028 -9.42356 -9.05831 -8.72331 -8.27392 -6.29628 -0.33448 0.11899 1.17360 1.33924 1.34575 1.40680 1.45408 2.10178 2.34196 3.05595 3.15787 3.45669 3.71042 3.83229 4.01478 4.08452 4.10599 4.19686 4.23800 4.32324 4.43775 4.51411 4.58396 4.60464 4.64338 4.70873 4.76588 4.91368 4.94484 5.03329 5.06786 5.10555 5.22151 5.36849 5.40317 5.55465 5.62544 5.71035 5.73994 5.74959 5.80893 5.96816 6.05780 6.16343 6.34929 6.65028 6.76154 7.33488 8.89412 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.023110 B = 0.004229 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.299887 B = 6619.585035 C = 7366.488157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.149 4.149 3 C 0.072 3.928 4 N -0.532 5.532 5 C 0.175 3.825 6 C -0.511 4.511 7 H 0.037 0.963 8 C 0.010 3.990 9 N -0.948 5.948 10 Si 0.942 3.058 11 H -0.266 1.266 12 H -0.281 1.281 13 H -0.252 1.252 14 C 0.101 3.899 15 C -0.071 4.071 16 C -0.111 4.111 17 C -0.110 4.110 18 C -0.072 4.072 19 C -0.116 4.116 20 C -0.121 4.121 21 C -0.119 4.119 22 C -0.117 4.117 23 C -0.066 4.066 24 C -0.108 4.108 25 H 0.101 0.899 26 H 0.112 0.888 27 H 0.101 0.899 28 H 0.036 0.964 29 H 0.092 0.908 30 H -0.012 1.012 31 H 0.030 0.970 32 H 0.266 0.734 33 H 0.064 0.936 34 H 0.041 0.959 35 H 0.109 0.891 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.149 0.851 39 H 0.149 0.851 40 H 0.142 0.858 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.024 4.027 -22.588 23.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.167 4.167 3 C -0.055 4.055 4 N -0.256 5.256 5 C 0.048 3.952 6 C -0.549 4.549 7 H 0.056 0.944 8 C -0.187 4.187 9 N -0.589 5.589 10 Si 0.766 3.234 11 H -0.191 1.191 12 H -0.207 1.207 13 H -0.176 1.176 14 C -0.027 4.027 15 C -0.072 4.072 16 C -0.129 4.129 17 C -0.128 4.128 18 C -0.072 4.072 19 C -0.133 4.133 20 C -0.138 4.138 21 C -0.137 4.137 22 C -0.135 4.135 23 C -0.066 4.066 24 C -0.126 4.126 25 H 0.119 0.881 26 H 0.130 0.870 27 H 0.119 0.881 28 H 0.054 0.946 29 H 0.110 0.890 30 H 0.006 0.994 31 H 0.048 0.952 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.060 0.940 35 H 0.127 0.873 36 H 0.162 0.838 37 H 0.161 0.839 38 H 0.167 0.833 39 H 0.167 0.833 40 H 0.159 0.841 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.279 3.573 -22.378 22.775 hybrid contribution -0.876 0.659 1.217 1.638 sum 1.402 4.232 -21.160 21.625 Atomic orbital electron populations 1.23957 0.95318 1.02643 1.01001 1.22876 0.96130 0.98295 0.99437 1.21413 0.94191 0.94869 0.95014 1.61803 1.15738 1.46068 1.01973 1.19924 0.93835 0.94130 0.87268 1.21246 0.99840 1.42829 0.90985 0.94443 1.25785 1.01955 0.95152 0.95842 1.70046 1.38601 1.49968 1.00273 0.85789 0.80058 0.79615 0.77963 1.19083 1.20696 1.17584 1.20938 0.93522 0.92071 0.96125 1.19538 0.95277 0.97747 0.94625 1.20828 0.94649 0.97927 0.99541 1.21209 1.00101 0.99983 0.91481 1.18380 0.95463 0.98846 0.94504 1.21293 0.99643 1.00285 0.92112 1.21217 0.97390 0.97566 0.97671 1.21214 0.94503 0.98109 0.99836 1.21268 1.00819 1.00220 0.91218 1.18293 0.94867 0.98830 0.94606 1.21007 0.99570 1.00830 0.91210 0.88054 0.87012 0.88078 0.94624 0.89022 0.99445 0.95196 0.92500 0.91766 0.94049 0.87287 0.83811 0.83867 0.83297 0.83320 0.84056 0.84651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.37 14.32 67.78 0.97 -4.40 16 2 C -0.15 -4.90 8.71 25.64 0.22 -4.68 16 3 C 0.07 2.46 5.24 85.56 0.45 2.91 16 4 N -0.53 -22.40 4.37 -909.93 -3.98 -26.38 16 5 C 0.18 8.52 3.65 85.56 0.31 8.83 16 6 C -0.51 -29.89 9.12 25.60 0.23 -29.66 16 7 H 0.04 2.45 7.96 -2.91 -0.02 2.42 16 8 C 0.01 0.58 5.47 84.66 0.46 1.04 16 9 N -0.95 -59.81 13.96 21.45 0.30 -59.51 16 10 Si 0.94 44.53 27.44 68.60 1.88 46.41 16 11 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 12 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 13 H -0.25 -11.15 6.59 99.48 0.66 -10.49 16 14 C 0.10 3.90 4.92 85.55 0.42 4.32 16 15 C -0.07 -2.40 4.92 -20.09 -0.10 -2.50 16 16 C -0.11 -3.71 9.59 22.04 0.21 -3.50 16 17 C -0.11 -3.07 9.77 22.33 0.22 -2.85 16 18 C -0.07 -1.87 5.74 -21.30 -0.12 -2.00 16 19 C -0.12 -2.32 9.77 22.33 0.22 -2.10 16 20 C -0.12 -1.99 9.95 22.05 0.22 -1.77 16 21 C -0.12 -1.97 9.95 22.05 0.22 -1.75 16 22 C -0.12 -2.38 9.77 22.33 0.22 -2.17 16 23 C -0.07 -1.73 5.74 -21.30 -0.12 -1.85 16 24 C -0.11 -3.05 7.50 22.33 0.17 -2.89 16 25 H 0.10 2.60 7.84 -2.91 -0.02 2.58 16 26 H 0.11 2.72 8.06 -2.91 -0.02 2.69 16 27 H 0.10 3.49 8.06 -2.91 -0.02 3.46 16 28 H 0.04 1.15 7.71 -2.39 -0.02 1.14 16 29 H 0.09 2.86 5.15 -2.38 -0.01 2.84 16 30 H -0.01 -0.59 7.17 -2.39 -0.02 -0.60 16 31 H 0.03 1.45 6.44 -2.39 -0.02 1.43 16 32 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 33 H 0.06 2.86 7.28 -2.38 -0.02 2.85 16 34 H 0.04 1.47 8.05 -2.39 -0.02 1.46 16 35 H 0.11 3.95 8.06 -2.91 -0.02 3.93 16 36 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 37 H 0.14 2.20 8.06 -2.91 -0.02 2.17 16 38 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 39 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 40 H 0.14 2.25 8.06 -2.91 -0.02 2.22 16 41 H 0.14 3.33 7.72 -2.91 -0.02 3.30 16 Total: -1.00 -68.95 338.79 3.35 -65.60 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 0.94 Total: 18.86 kcal Atomic # 6 Polarization: -49.18 SS G_CDS: 4.20 Total: -44.98 kcal Atomic # 7 Polarization: -82.21 SS G_CDS: -3.68 Total: -85.89 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.88 Total: 46.41 kcal Total: -68.95 3.35 -65.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428840141.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.231 kcal (2) G-P(sol) polarization free energy of solvation -68.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds