Wall clock time and date at job start Tue Mar 31 2020 05:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50696 * 120.00696 * 2 1 4 4 N 1.46903 * 109.47272 * 124.42585 * 3 2 1 5 5 C 1.46897 * 111.00464 * 199.93446 * 4 3 2 6 6 C 1.50706 * 109.46824 * 66.05158 * 5 4 3 7 7 H 1.07997 * 119.99840 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00012 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00101 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00179 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47099 * 59.99286 * 10 8 6 12 12 H 1.48496 * 109.47232 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.46890 * 299.99569 * 10 8 6 14 14 C 1.46899 * 110.99525 * 75.98236 * 4 3 2 15 15 C 1.50702 * 109.47355 * 197.42339 * 14 4 3 16 16 C 1.36126 * 120.17302 * 255.04279 * 15 14 4 17 17 C 1.39333 * 120.98591 * 180.02562 * 16 15 14 18 18 C 1.36133 * 120.99209 * 359.91784 * 17 16 15 19 19 C 1.40497 * 119.65389 * 0.05353 * 18 17 16 20 20 C 1.40552 * 121.30093 * 179.97438 * 19 18 17 21 21 C 1.36085 * 119.65606 * 180.02562 * 20 19 18 22 22 C 1.39379 * 120.99520 * 359.94909 * 21 20 19 23 23 C 1.36086 * 120.99475 * 0.05179 * 22 21 20 24 24 C 1.40504 * 120.17266 * 75.05619 * 15 14 4 25 25 H 1.08000 * 119.99626 * 359.97438 * 1 2 3 26 26 H 1.07990 * 120.00799 * 179.97438 * 1 2 3 27 27 H 1.08000 * 119.99626 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.47023 * 4.43759 * 3 2 1 29 29 H 1.08995 * 109.47490 * 244.43039 * 3 2 1 30 30 H 1.08998 * 109.47233 * 186.04626 * 5 4 3 31 31 H 1.08993 * 109.46995 * 306.05008 * 5 4 3 32 32 H 0.97001 * 120.00397 * 180.02562 * 9 8 6 33 33 H 1.08997 * 109.47525 * 77.42372 * 14 4 3 34 34 H 1.09006 * 109.47504 * 317.42043 * 14 4 3 35 35 H 1.07997 * 119.50628 * 0.03410 * 16 15 14 36 36 H 1.08000 * 119.50806 * 179.97438 * 17 16 15 37 37 H 1.08000 * 120.17219 * 180.32424 * 18 17 16 38 38 H 1.07997 * 120.16842 * 0.02636 * 20 19 18 39 39 H 1.08002 * 119.50037 * 179.97438 * 21 20 19 40 40 H 1.08002 * 119.50648 * 180.02562 * 22 21 20 41 41 H 1.08005 * 120.17597 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9866 1.3375 1.1424 5 6 3.3809 2.7160 1.4617 6 6 2.1785 3.4820 1.9505 7 1 1.2175 2.9935 2.0168 8 6 2.3050 4.8064 2.3120 9 7 3.4751 5.4013 2.2307 10 14 0.8146 5.7560 2.9171 11 1 0.2719 5.1019 4.1348 12 1 1.2131 7.1495 3.2400 13 1 -0.2261 5.7711 1.8579 14 6 4.1653 0.4977 0.8908 15 6 4.8624 0.2066 2.1948 16 6 6.0241 0.8439 2.5068 17 6 6.6830 0.5873 3.7073 18 6 6.1833 -0.3068 4.6040 19 6 4.9860 -0.9837 4.3172 20 6 4.4394 -1.9141 5.2178 21 6 3.2780 -2.5510 4.9057 22 6 2.6190 -2.2944 3.7047 23 6 3.1182 -1.4001 2.8085 24 6 4.3167 -0.7241 3.0949 25 1 -0.5399 0.9353 0.0004 26 1 -0.5401 -0.9351 -0.0004 27 1 1.8499 -0.9353 -0.0004 28 1 1.3580 2.1320 0.0795 29 1 2.6294 1.3978 -0.9269 30 1 4.1449 2.7046 2.2391 31 1 3.7789 3.1963 0.5680 32 1 3.5643 6.3330 2.4854 33 1 4.8487 1.0215 0.2226 34 1 3.8524 -0.4389 0.4292 35 1 6.4412 1.5591 1.8133 36 1 7.6035 1.1063 3.9304 37 1 6.7023 -0.4917 5.5330 38 1 4.9386 -2.1225 6.1525 39 1 2.8605 -3.2658 5.5993 40 1 1.6984 -2.8133 3.4816 41 1 2.5964 -1.2111 1.8820 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428860040.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:00 Heat of formation + Delta-G solvation = 50.672468 kcal Electronic energy + Delta-G solvation = -21676.972096 eV Core-core repulsion = 18714.237041 eV Total energy + Delta-G solvation = -2962.735056 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.33542 -38.79861 -37.20818 -34.98337 -34.56353 -33.23593 -31.10221 -30.49496 -29.22946 -27.24987 -25.69745 -24.10840 -23.79363 -22.74770 -21.28739 -20.51491 -18.58990 -18.27995 -17.76339 -17.07053 -16.71266 -16.44674 -15.87666 -15.58011 -15.27935 -15.06605 -14.42365 -14.34335 -14.24882 -13.99655 -13.83898 -13.60588 -13.30287 -13.05767 -12.83958 -12.64134 -12.59115 -12.50910 -12.11381 -12.03254 -11.73156 -11.66163 -11.44013 -11.26464 -10.63373 -10.59241 -10.22355 -9.41298 -9.01398 -8.62654 -8.20117 -6.29100 -0.26797 0.21053 1.22168 1.37685 1.40934 1.48352 1.49923 2.19307 2.39061 3.12263 3.21863 3.54174 3.75022 3.94701 4.07272 4.12320 4.16200 4.25096 4.32825 4.38670 4.45925 4.46639 4.60342 4.66879 4.70005 4.73462 4.92811 4.98090 5.05676 5.17678 5.23193 5.28859 5.33911 5.43091 5.46371 5.61896 5.64447 5.72037 5.76802 5.86483 6.02063 6.03514 6.09117 6.24554 6.35698 6.61019 6.86293 7.39519 8.90593 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.013140 B = 0.006226 C = 0.005299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.425986 B = 4496.190703 C = 5282.743127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.146 4.146 3 C 0.082 3.918 4 N -0.525 5.525 5 C 0.213 3.787 6 C -0.520 4.520 7 H 0.059 0.941 8 C 0.004 3.996 9 N -0.932 5.932 10 Si 0.963 3.037 11 H -0.272 1.272 12 H -0.282 1.282 13 H -0.266 1.266 14 C 0.092 3.908 15 C -0.067 4.067 16 C -0.132 4.132 17 C -0.122 4.122 18 C -0.116 4.116 19 C -0.075 4.075 20 C -0.118 4.118 21 C -0.118 4.118 22 C -0.129 4.129 23 C -0.105 4.105 24 C -0.055 4.055 25 H 0.086 0.914 26 H 0.122 0.878 27 H 0.118 0.882 28 H 0.065 0.935 29 H 0.032 0.968 30 H 0.008 0.992 31 H -0.042 1.042 32 H 0.263 0.737 33 H 0.028 0.972 34 H 0.094 0.906 35 H 0.110 0.890 36 H 0.140 0.860 37 H 0.153 0.847 38 H 0.150 0.850 39 H 0.151 0.849 40 H 0.142 0.858 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.003 -16.477 2.076 16.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.164 4.164 3 C -0.046 4.046 4 N -0.248 5.248 5 C 0.087 3.913 6 C -0.558 4.558 7 H 0.078 0.922 8 C -0.194 4.194 9 N -0.573 5.573 10 Si 0.787 3.213 11 H -0.197 1.197 12 H -0.208 1.208 13 H -0.190 1.190 14 C -0.035 4.035 15 C -0.067 4.067 16 C -0.151 4.151 17 C -0.140 4.140 18 C -0.134 4.134 19 C -0.075 4.075 20 C -0.136 4.136 21 C -0.136 4.136 22 C -0.147 4.147 23 C -0.123 4.123 24 C -0.055 4.055 25 H 0.105 0.895 26 H 0.140 0.860 27 H 0.136 0.864 28 H 0.084 0.916 29 H 0.050 0.950 30 H 0.027 0.973 31 H -0.024 1.024 32 H 0.072 0.928 33 H 0.046 0.954 34 H 0.112 0.888 35 H 0.128 0.872 36 H 0.158 0.842 37 H 0.171 0.829 38 H 0.168 0.832 39 H 0.168 0.832 40 H 0.160 0.840 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.843 -16.486 2.489 16.694 hybrid contribution 0.124 1.653 -0.639 1.777 sum 0.967 -14.832 1.850 14.978 Atomic orbital electron populations 1.23922 0.95521 1.02351 1.00200 1.22828 0.96243 0.97174 1.00175 1.21192 0.95526 0.96906 0.90955 1.62094 1.13840 1.11510 1.37383 1.19339 0.95437 0.83560 0.93010 1.21401 0.95803 0.95481 1.43140 0.92236 1.25841 0.98929 0.98692 0.95951 1.70076 1.25172 1.12421 1.49628 0.85538 0.79371 0.77307 0.79050 1.19713 1.20753 1.19042 1.21057 0.91609 0.97964 0.92894 1.19762 0.94519 0.95945 0.96491 1.20910 0.96377 0.99390 0.98394 1.21029 1.00826 0.98482 0.93682 1.21291 0.95255 0.96641 1.00194 1.18461 0.96106 0.98482 0.94461 1.21279 0.97041 0.96017 0.99276 1.21183 0.95253 1.00083 0.97096 1.21156 1.00743 0.98344 0.94474 1.21306 0.94481 0.95493 1.00983 1.18133 0.96022 0.97037 0.94317 0.89540 0.86014 0.86380 0.91606 0.95043 0.97344 1.02417 0.92795 0.95398 0.88800 0.87214 0.84187 0.82902 0.83215 0.83162 0.84044 0.85288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.93 14.32 67.78 0.97 -3.96 16 2 C -0.15 -4.42 8.43 25.65 0.22 -4.20 16 3 C 0.08 3.17 5.25 85.56 0.45 3.62 16 4 N -0.52 -22.91 4.16 -909.95 -3.79 -26.70 16 5 C 0.21 11.58 4.56 85.56 0.39 11.97 16 6 C -0.52 -30.13 8.23 25.60 0.21 -29.92 16 7 H 0.06 3.41 7.31 -2.91 -0.02 3.38 16 8 C 0.00 0.23 5.46 84.65 0.46 0.69 16 9 N -0.93 -57.14 13.29 21.45 0.28 -56.86 16 10 Si 0.96 45.31 29.54 68.60 2.03 47.34 16 11 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 13 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 14 C 0.09 3.46 4.09 85.56 0.35 3.81 16 15 C -0.07 -2.53 4.76 -19.80 -0.09 -2.62 16 16 C -0.13 -4.86 8.83 22.04 0.19 -4.67 16 17 C -0.12 -3.84 9.95 22.04 0.22 -3.62 16 18 C -0.12 -3.35 9.77 22.33 0.22 -3.13 16 19 C -0.08 -2.37 5.74 -21.30 -0.12 -2.49 16 20 C -0.12 -2.97 9.77 22.33 0.22 -2.75 16 21 C -0.12 -2.73 9.95 22.04 0.22 -2.51 16 22 C -0.13 -3.34 9.95 22.04 0.22 -3.13 16 23 C -0.10 -3.34 9.26 22.33 0.21 -3.13 16 24 C -0.05 -1.95 5.74 -21.30 -0.12 -2.07 16 25 H 0.09 2.51 7.84 -2.91 -0.02 2.49 16 26 H 0.12 2.53 8.06 -2.92 -0.02 2.51 16 27 H 0.12 3.09 6.34 -2.91 -0.02 3.07 16 28 H 0.07 2.89 6.23 -2.39 -0.01 2.88 16 29 H 0.03 1.18 8.00 -2.39 -0.02 1.16 16 30 H 0.01 0.50 6.74 -2.39 -0.02 0.49 16 31 H -0.04 -2.47 8.12 -2.39 -0.02 -2.49 16 32 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 33 H 0.03 1.07 7.81 -2.39 -0.02 1.05 16 34 H 0.09 3.00 6.00 -2.38 -0.01 2.99 16 35 H 0.11 4.06 7.96 -2.91 -0.02 4.04 16 36 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 37 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 38 H 0.15 2.75 8.06 -2.91 -0.02 2.72 16 39 H 0.15 2.38 8.06 -2.91 -0.02 2.35 16 40 H 0.14 2.84 8.06 -2.91 -0.02 2.82 16 41 H 0.13 4.04 4.61 -2.91 -0.01 4.03 16 Total: -1.00 -68.58 335.95 3.74 -64.84 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: 1.01 Total: 19.48 kcal Atomic # 6 Polarization: -52.30 SS G_CDS: 4.21 Total: -48.10 kcal Atomic # 7 Polarization: -80.06 SS G_CDS: -3.50 Total: -83.56 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -68.58 3.74 -64.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428860040.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.513 kcal (2) G-P(sol) polarization free energy of solvation -68.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds