Wall clock time and date at job start Tue Mar 31 2020 05:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47130 * 2 1 4 4 H 1.09000 * 109.47419 * 304.99817 * 3 2 1 5 5 F 1.39904 * 109.47292 * 65.00034 * 3 2 1 6 6 C 1.53006 * 109.47175 * 184.99768 * 3 2 1 7 7 N 1.46502 * 109.47101 * 180.02562 * 6 3 2 8 8 C 1.39663 * 119.99806 * 180.02562 * 7 6 3 9 9 C 1.38973 * 120.04649 * 0.02562 * 8 7 6 10 10 C 1.38116 * 120.03003 * 179.97438 * 9 8 7 11 11 C 1.38216 * 120.13578 * 359.74695 * 10 9 8 12 12 C 1.38779 * 120.08401 * 0.51068 * 11 10 9 13 13 O 1.35897 * 120.00949 * 179.76812 * 12 11 10 14 14 C 1.42898 * 117.00481 * 359.71829 * 13 12 11 15 15 C 1.52997 * 109.47319 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46756 * 59.99920 * 20 18 16 22 22 H 1.48490 * 109.47381 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47117 * 300.00527 * 20 18 16 24 24 C 1.38609 * 119.96517 * 359.48769 * 12 11 10 25 25 H 1.09002 * 109.47340 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47193 * 300.00258 * 1 2 3 27 27 H 1.09006 * 109.47071 * 60.00011 * 1 2 3 28 28 H 1.08997 * 109.47193 * 239.99742 * 2 1 3 29 29 H 1.08996 * 109.47003 * 119.99995 * 2 1 3 30 30 H 1.09001 * 109.46841 * 60.00162 * 6 3 2 31 31 H 1.09000 * 109.46674 * 299.99866 * 6 3 2 32 32 H 0.97001 * 119.99801 * 359.97438 * 7 6 3 33 33 H 1.07996 * 119.98339 * 359.95966 * 9 8 7 34 34 H 1.08007 * 119.92769 * 180.02562 * 10 9 8 35 35 H 1.07991 * 119.95689 * 180.26971 * 11 10 9 36 36 H 1.09002 * 109.47259 * 300.00417 * 14 13 12 37 37 H 1.09001 * 109.47074 * 60.00439 * 14 13 12 38 38 H 1.09002 * 109.47153 * 300.00307 * 15 14 13 39 39 H 1.08998 * 109.47533 * 59.99936 * 15 14 13 40 40 H 0.97002 * 119.99731 * 180.02562 * 19 18 16 41 41 H 1.08007 * 120.06150 * 180.27477 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 9 1.6699 2.0680 1.1954 6 6 3.5649 1.4443 -0.1257 7 7 4.0532 2.8255 -0.1251 8 6 5.4220 3.0822 -0.2308 9 6 6.3215 2.0282 -0.3373 10 6 7.6749 2.2825 -0.4424 11 6 8.1380 3.5848 -0.4474 12 6 7.2449 4.6411 -0.3360 13 8 7.7022 5.9208 -0.3362 14 6 9.1149 6.1049 -0.4483 15 6 9.4373 7.6004 -0.4303 16 6 10.9270 7.7947 -0.5491 17 1 11.5786 6.9372 -0.6298 18 6 11.4580 9.0671 -0.5559 19 7 10.6644 10.1113 -0.4581 20 14 13.3046 9.3078 -0.7024 21 1 13.7817 8.7132 -1.9769 22 1 13.6174 10.7593 -0.6864 23 1 13.9827 8.6421 0.4387 24 6 5.8857 4.3904 -0.2303 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8532 0.9570 -1.0571 31 1 3.9994 0.9053 0.7162 32 1 3.4259 3.5617 -0.0519 33 1 5.9620 1.0098 -0.3375 34 1 8.3725 1.4621 -0.5255 35 1 9.1965 3.7804 -0.5341 36 1 9.6126 5.6162 0.3893 37 1 9.4651 5.6686 -1.3838 38 1 8.9396 8.0895 -1.2677 39 1 9.0872 8.0365 0.5053 40 1 11.0380 11.0065 -0.4632 41 1 5.1889 5.2114 -0.1480 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000442104494.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:17 Heat of formation + Delta-G solvation = -86.376331 kcal Electronic energy + Delta-G solvation = -20707.381351 eV Core-core repulsion = 17307.934188 eV Total energy + Delta-G solvation = -3399.447163 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.04504 -39.74354 -37.84547 -35.78856 -34.14160 -33.31120 -30.95577 -30.25411 -28.97018 -27.60853 -25.04133 -23.91949 -22.68218 -21.76674 -21.28761 -20.29877 -18.00966 -17.22407 -16.76710 -16.30076 -15.84244 -15.64278 -15.24729 -15.12894 -14.81886 -14.52614 -14.30226 -14.08346 -13.87874 -13.36021 -13.19095 -12.70039 -12.60187 -12.47488 -12.29136 -11.64684 -11.57700 -11.51508 -11.30937 -11.15605 -11.09773 -10.87306 -10.74824 -10.42200 -10.02780 -9.72047 -9.61901 -9.27817 -8.42210 -7.94230 -7.36392 -6.07498 -4.12000 1.71542 1.86702 3.09526 3.30707 3.34945 3.37003 3.95783 4.00615 4.11169 4.16124 4.35379 4.37037 4.44837 4.78589 4.88861 5.06490 5.11101 5.26710 5.28691 5.30514 5.35212 5.40111 5.55055 5.58663 5.67296 5.72153 5.78175 6.10284 6.10536 6.11005 6.38827 6.62555 6.67270 6.74192 6.89108 7.33751 7.53642 7.61931 7.68101 7.85981 8.13706 8.27586 8.93442 9.51978 11.04050 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.050024 B = 0.002339 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.595364 B =11969.635729 C =12425.368588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.149 4.149 3 C 0.082 3.918 4 H 0.089 0.911 5 F -0.207 7.207 6 C 0.103 3.897 7 N -0.749 5.749 8 C 0.246 3.754 9 C -0.244 4.244 10 C -0.037 4.037 11 C -0.263 4.263 12 C 0.188 3.812 13 O -0.316 6.316 14 C 0.066 3.934 15 C 0.025 3.975 16 C -0.526 4.526 17 H 0.058 0.942 18 C 0.060 3.940 19 N -0.890 5.890 20 Si 0.900 3.100 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.276 1.276 24 C -0.236 4.236 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.401 0.599 33 H 0.115 0.885 34 H 0.119 0.881 35 H 0.127 0.873 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.027 0.973 39 H 0.027 0.973 40 H 0.264 0.736 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.652 -21.496 -0.415 27.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.187 4.187 3 C 0.045 3.955 4 H 0.107 0.893 5 F -0.188 7.188 6 C -0.023 4.023 7 N -0.380 5.380 8 C 0.144 3.856 9 C -0.267 4.267 10 C -0.056 4.056 11 C -0.283 4.283 12 C 0.140 3.860 13 O -0.229 6.229 14 C -0.008 4.008 15 C -0.012 4.012 16 C -0.564 4.564 17 H 0.076 0.924 18 C -0.142 4.142 19 N -0.528 5.528 20 Si 0.727 3.273 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.201 1.201 24 C -0.259 4.259 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.236 0.764 33 H 0.133 0.867 34 H 0.137 0.863 35 H 0.145 0.855 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.073 0.927 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -17.785 -21.283 -0.368 27.738 hybrid contribution 0.965 0.382 -0.002 1.038 sum -16.820 -20.901 -0.370 26.831 Atomic orbital electron populations 1.21762 0.94503 1.02414 1.02544 1.22071 0.97558 0.94848 1.04209 1.21877 0.94576 0.94442 0.84612 0.89300 1.92849 1.92788 1.84180 1.49017 1.21881 0.92499 0.85167 1.02718 1.44388 1.04254 1.06436 1.82953 1.17318 0.83266 0.92638 0.92413 1.20372 0.93058 0.97177 1.16092 1.20617 0.94569 0.95853 0.94528 1.21163 1.00055 0.92750 1.14354 1.18817 0.92282 0.84386 0.90523 1.86149 1.27874 1.22573 1.86258 1.23320 0.75514 1.02342 0.99617 1.19124 0.96599 0.86674 0.98833 1.20942 0.91263 0.92477 1.51753 0.92395 1.24996 0.98373 0.95899 0.94972 1.69972 1.34997 0.98310 1.49517 0.86539 0.84951 0.77088 0.78738 1.20113 1.21144 1.20101 1.19670 0.93664 0.95069 1.17513 0.91964 0.92018 0.92383 0.89754 0.90342 0.90583 0.91191 0.76416 0.86749 0.86299 0.85514 0.93073 0.93073 0.95432 0.95417 0.92682 0.85700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.83 37.16 0.37 -0.37 16 2 C -0.15 -0.72 5.70 -26.73 -0.15 -0.87 16 3 C 0.08 0.53 3.40 -26.73 -0.09 0.44 16 4 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 5 F -0.21 -1.98 16.62 2.25 0.04 -1.95 16 6 C 0.10 0.79 4.67 -4.04 -0.02 0.77 16 7 N -0.75 -7.91 5.66 -58.65 -0.33 -8.24 16 8 C 0.25 3.35 6.65 -83.81 -0.56 2.79 16 9 C -0.24 -3.15 9.31 -39.35 -0.37 -3.52 16 10 C -0.04 -0.51 10.03 -39.63 -0.40 -0.90 16 11 C -0.26 -4.33 9.04 -39.39 -0.36 -4.68 16 12 C 0.19 3.45 6.68 -39.24 -0.26 3.19 16 13 O -0.32 -6.76 10.13 -19.42 -0.20 -6.96 16 14 C 0.07 1.46 4.68 37.16 0.17 1.63 16 15 C 0.02 0.66 5.34 -27.89 -0.15 0.52 16 16 C -0.53 -14.86 9.11 -34.44 -0.31 -15.17 16 17 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -26.74 13.29 55.43 0.74 -26.00 16 20 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 C -0.24 -3.80 9.83 -39.24 -0.39 -4.19 16 25 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.06 0.35 7.93 -51.93 -0.41 -0.06 16 27 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.50 7.95 -51.93 -0.41 0.08 16 31 H 0.07 0.56 7.95 -51.93 -0.41 0.15 16 32 H 0.40 3.96 8.43 -40.82 -0.34 3.62 16 33 H 0.11 1.18 6.73 -52.49 -0.35 0.83 16 34 H 0.12 1.31 8.06 -52.48 -0.42 0.88 16 35 H 0.13 2.06 6.29 -52.49 -0.33 1.73 16 36 H 0.05 1.08 7.67 -51.93 -0.40 0.68 16 37 H 0.05 1.07 7.65 -51.93 -0.40 0.68 16 38 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.13 1.92 8.06 -52.48 -0.42 1.49 16 LS Contribution 346.04 15.07 5.21 5.21 Total: -1.00 -31.48 346.04 -8.58 -40.06 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -6.41 Total: 0.19 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: -2.61 Total: -18.75 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: 0.40 Total: -34.25 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -0.20 Total: -6.96 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.95 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.48 -8.58 -40.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000442104494.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.319 kcal (2) G-P(sol) polarization free energy of solvation -31.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds