Wall clock time and date at job start Tue Mar 31 2020 05:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47130 * 2 1 4 4 H 1.09000 * 109.47419 * 304.99817 * 3 2 1 5 5 F 1.39904 * 109.47292 * 65.00034 * 3 2 1 6 6 C 1.53006 * 109.47175 * 184.99768 * 3 2 1 7 7 N 1.46502 * 109.47101 * 180.02562 * 6 3 2 8 8 C 1.39663 * 119.99806 * 180.02562 * 7 6 3 9 9 C 1.38973 * 120.04649 * 0.02562 * 8 7 6 10 10 C 1.38116 * 120.03003 * 179.97438 * 9 8 7 11 11 C 1.38216 * 120.13578 * 359.74695 * 10 9 8 12 12 C 1.38779 * 120.08401 * 0.51068 * 11 10 9 13 13 O 1.35897 * 120.00949 * 179.76812 * 12 11 10 14 14 C 1.42898 * 117.00481 * 359.71829 * 13 12 11 15 15 C 1.52997 * 109.47319 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46756 * 59.99920 * 20 18 16 22 22 H 1.48490 * 109.47381 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47117 * 300.00527 * 20 18 16 24 24 C 1.38609 * 119.96517 * 359.48769 * 12 11 10 25 25 H 1.09002 * 109.47340 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47193 * 300.00258 * 1 2 3 27 27 H 1.09006 * 109.47071 * 60.00011 * 1 2 3 28 28 H 1.08997 * 109.47193 * 239.99742 * 2 1 3 29 29 H 1.08996 * 109.47003 * 119.99995 * 2 1 3 30 30 H 1.09001 * 109.46841 * 60.00162 * 6 3 2 31 31 H 1.09000 * 109.46674 * 299.99866 * 6 3 2 32 32 H 0.97001 * 119.99801 * 359.97438 * 7 6 3 33 33 H 1.07996 * 119.98339 * 359.95966 * 9 8 7 34 34 H 1.08007 * 119.92769 * 180.02562 * 10 9 8 35 35 H 1.07991 * 119.95689 * 180.26971 * 11 10 9 36 36 H 1.09002 * 109.47259 * 300.00417 * 14 13 12 37 37 H 1.09001 * 109.47074 * 60.00439 * 14 13 12 38 38 H 1.09002 * 109.47153 * 300.00307 * 15 14 13 39 39 H 1.08998 * 109.47533 * 59.99936 * 15 14 13 40 40 H 0.97002 * 119.99731 * 180.02562 * 19 18 16 41 41 H 1.08007 * 120.06150 * 180.27477 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 9 1.6699 2.0680 1.1954 6 6 3.5649 1.4443 -0.1257 7 7 4.0532 2.8255 -0.1251 8 6 5.4220 3.0822 -0.2308 9 6 6.3215 2.0282 -0.3373 10 6 7.6749 2.2825 -0.4424 11 6 8.1380 3.5848 -0.4474 12 6 7.2449 4.6411 -0.3360 13 8 7.7022 5.9208 -0.3362 14 6 9.1149 6.1049 -0.4483 15 6 9.4373 7.6004 -0.4303 16 6 10.9270 7.7947 -0.5491 17 1 11.5786 6.9372 -0.6298 18 6 11.4580 9.0671 -0.5559 19 7 10.6644 10.1113 -0.4581 20 14 13.3046 9.3078 -0.7024 21 1 13.7817 8.7132 -1.9769 22 1 13.6174 10.7593 -0.6864 23 1 13.9827 8.6421 0.4387 24 6 5.8857 4.3904 -0.2303 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8532 0.9570 -1.0571 31 1 3.9994 0.9053 0.7162 32 1 3.4259 3.5617 -0.0519 33 1 5.9620 1.0098 -0.3375 34 1 8.3725 1.4621 -0.5255 35 1 9.1965 3.7804 -0.5341 36 1 9.6126 5.6162 0.3893 37 1 9.4651 5.6686 -1.3838 38 1 8.9396 8.0895 -1.2677 39 1 9.0872 8.0365 0.5053 40 1 11.0380 11.0065 -0.4632 41 1 5.1889 5.2114 -0.1480 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000442104494.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:16 Heat of formation + Delta-G solvation = -104.507450 kcal Electronic energy + Delta-G solvation = -20708.167575 eV Core-core repulsion = 17307.934188 eV Total energy + Delta-G solvation = -3400.233387 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.68065 -41.02867 -39.10771 -36.65885 -35.45356 -34.74711 -32.57500 -31.45444 -30.24827 -28.47218 -26.94897 -24.68584 -23.92153 -23.01607 -22.09503 -21.71623 -19.34981 -18.34078 -17.76992 -17.60894 -16.91887 -16.90579 -16.71964 -16.55188 -16.06836 -15.64724 -15.05926 -15.01030 -14.54570 -14.41071 -14.30998 -14.13444 -14.05778 -13.62373 -13.20350 -13.08229 -12.90640 -12.62413 -12.55789 -12.45985 -12.03392 -11.96390 -11.70877 -11.66663 -11.61331 -11.55818 -11.38697 -10.89929 -10.60942 -9.23223 -8.39260 -8.25960 -6.39890 0.56024 0.67894 1.41181 1.45615 1.53567 2.12029 2.38563 2.70034 2.95165 3.08099 3.41986 3.69216 3.86258 3.93135 3.99665 4.25490 4.28832 4.29183 4.34752 4.35842 4.46072 4.51773 4.66085 4.67927 4.75069 4.79913 4.84516 4.98565 5.07954 5.25777 5.27751 5.32839 5.36020 5.47212 5.51397 5.61989 5.66363 5.75228 6.07345 6.35068 6.60046 6.70924 6.74708 7.30041 8.87013 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.050024 B = 0.002339 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.595364 B =11969.635729 C =12425.368588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.144 4.144 3 C 0.079 3.921 4 H 0.100 0.900 5 F -0.227 7.227 6 C 0.098 3.902 7 N -0.744 5.744 8 C 0.251 3.749 9 C -0.235 4.235 10 C -0.031 4.031 11 C -0.280 4.280 12 C 0.151 3.849 13 O -0.343 6.343 14 C 0.086 3.914 15 C 0.028 3.972 16 C -0.547 4.547 17 H 0.071 0.929 18 C 0.000 4.000 19 N -0.931 5.931 20 Si 0.978 3.022 21 H -0.263 1.263 22 H -0.282 1.282 23 H -0.264 1.264 24 C -0.254 4.254 25 H 0.071 0.929 26 H 0.046 0.954 27 H 0.061 0.939 28 H 0.105 0.895 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.073 0.927 32 H 0.403 0.597 33 H 0.150 0.850 34 H 0.153 0.847 35 H 0.123 0.877 36 H 0.059 0.941 37 H 0.060 0.940 38 H -0.002 1.002 39 H -0.003 1.003 40 H 0.267 0.733 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.288 -24.595 -0.953 30.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.182 4.182 3 C 0.043 3.957 4 H 0.117 0.883 5 F -0.209 7.209 6 C -0.026 4.026 7 N -0.374 5.374 8 C 0.147 3.853 9 C -0.258 4.258 10 C -0.049 4.049 11 C -0.301 4.301 12 C 0.105 3.895 13 O -0.257 6.257 14 C 0.012 3.988 15 C -0.010 4.010 16 C -0.584 4.584 17 H 0.090 0.910 18 C -0.199 4.199 19 N -0.570 5.570 20 Si 0.801 3.199 21 H -0.188 1.188 22 H -0.208 1.208 23 H -0.188 1.188 24 C -0.277 4.277 25 H 0.090 0.910 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.123 0.877 29 H 0.096 0.904 30 H 0.116 0.884 31 H 0.091 0.909 32 H 0.238 0.762 33 H 0.167 0.833 34 H 0.170 0.830 35 H 0.141 0.859 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.076 0.924 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -17.469 -24.424 -0.903 30.041 hybrid contribution 0.648 1.230 0.175 1.401 sum -16.821 -23.193 -0.728 28.660 Atomic orbital electron populations 1.21777 0.94654 1.02910 1.02045 1.22069 0.97371 0.93576 1.05202 1.22069 0.93948 0.95661 0.84016 0.88254 1.92814 1.92940 1.84728 1.50368 1.22125 0.93165 0.83380 1.03895 1.44574 1.03123 1.08079 1.81629 1.17415 0.84840 0.91799 0.91295 1.20783 0.92554 0.98472 1.13957 1.20993 0.95691 0.95415 0.92850 1.21253 0.99625 0.93620 1.15607 1.19150 0.93567 0.83466 0.93307 1.86056 1.26914 1.25172 1.87579 1.22849 0.76688 0.98872 1.00401 1.18974 0.96298 0.89755 0.95929 1.21371 0.92002 0.93302 1.51764 0.91049 1.26077 1.04131 0.95448 0.94197 1.70125 1.37588 0.98936 1.50395 0.85308 0.77945 0.77192 0.79440 1.18775 1.20757 1.18822 1.19787 0.92893 0.96444 1.18618 0.90992 0.93488 0.91955 0.87663 0.90424 0.88395 0.90909 0.76239 0.83278 0.82978 0.85921 0.92245 0.92130 0.98377 0.98439 0.92450 0.86241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 9.83 71.98 0.71 -0.49 16 2 C -0.14 -0.99 5.70 30.59 0.17 -0.81 16 3 C 0.08 0.85 3.40 30.59 0.10 0.96 16 4 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 5 F -0.23 -4.08 16.62 44.97 0.75 -3.33 16 6 C 0.10 1.20 4.67 86.38 0.40 1.60 16 7 N -0.74 -14.22 5.66 -339.46 -1.92 -16.14 16 8 C 0.25 6.41 6.65 38.20 0.25 6.66 16 9 C -0.24 -5.28 9.31 22.42 0.21 -5.07 16 10 C -0.03 -0.76 10.03 22.24 0.22 -0.54 16 11 C -0.28 -9.09 9.04 22.39 0.20 -8.89 16 12 C 0.15 5.70 6.68 22.49 0.15 5.85 16 13 O -0.34 -15.49 10.13 -92.39 -0.94 -16.42 16 14 C 0.09 3.96 4.68 71.98 0.34 4.30 16 15 C 0.03 1.56 5.34 29.85 0.16 1.72 16 16 C -0.55 -31.50 9.11 25.60 0.23 -31.27 16 17 H 0.07 3.82 7.74 -2.91 -0.02 3.80 16 18 C 0.00 0.00 5.46 84.65 0.46 0.46 16 19 N -0.93 -57.57 13.29 21.45 0.28 -57.29 16 20 Si 0.98 44.05 29.54 68.60 2.03 46.08 16 21 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 22 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 23 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 24 C -0.25 -8.30 9.83 22.49 0.22 -8.08 16 25 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 26 H 0.05 0.49 7.93 -2.39 -0.02 0.48 16 27 H 0.06 0.42 8.14 -2.38 -0.02 0.40 16 28 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.10 0.83 7.95 -2.39 -0.02 0.82 16 31 H 0.07 0.90 7.95 -2.39 -0.02 0.88 16 32 H 0.40 7.50 8.43 -92.71 -0.78 6.72 16 33 H 0.15 2.31 6.73 -2.91 -0.02 2.29 16 34 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 35 H 0.12 3.97 6.29 -2.91 -0.02 3.95 16 36 H 0.06 2.58 7.67 -2.39 -0.02 2.56 16 37 H 0.06 2.61 7.65 -2.39 -0.02 2.60 16 38 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 39 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 40 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 41 H 0.12 3.86 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -70.50 346.04 4.27 -66.23 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 0.23 Total: 14.48 kcal Atomic # 6 Polarization: -37.44 SS G_CDS: 3.84 Total: -33.60 kcal Atomic # 7 Polarization: -71.79 SS G_CDS: -1.64 Total: -73.43 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.94 Total: -16.42 kcal Atomic # 9 Polarization: -4.08 SS G_CDS: 0.75 Total: -3.33 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -70.50 4.27 -66.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000442104494.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.282 kcal (2) G-P(sol) polarization free energy of solvation -70.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds