Wall clock time and date at job start Tue Mar 31 2020 05:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47085 * 2 1 4 4 H 1.09001 * 109.47103 * 55.00227 * 3 2 1 5 5 F 1.39898 * 109.47164 * 295.00175 * 3 2 1 6 6 C 1.53006 * 109.47175 * 174.99904 * 3 2 1 7 7 N 1.46502 * 109.47101 * 180.02562 * 6 3 2 8 8 C 1.39663 * 119.99806 * 180.02562 * 7 6 3 9 9 C 1.38973 * 120.04649 * 0.02562 * 8 7 6 10 10 C 1.38116 * 120.03003 * 179.97438 * 9 8 7 11 11 C 1.38216 * 120.13578 * 359.74695 * 10 9 8 12 12 C 1.38779 * 120.08401 * 0.51068 * 11 10 9 13 13 O 1.35897 * 120.00949 * 179.76812 * 12 11 10 14 14 C 1.42898 * 117.00481 * 359.71829 * 13 12 11 15 15 C 1.52997 * 109.47319 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46838 * 89.99826 * 20 18 16 22 22 H 1.48497 * 109.47419 * 209.99978 * 20 18 16 23 23 H 1.48499 * 109.47011 * 330.00539 * 20 18 16 24 24 C 1.38609 * 119.96517 * 359.48769 * 12 11 10 25 25 H 1.09003 * 109.47044 * 299.99944 * 1 2 3 26 26 H 1.08997 * 109.46937 * 60.00190 * 1 2 3 27 27 H 1.08995 * 109.46786 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47044 * 240.00056 * 2 1 3 29 29 H 1.08997 * 109.46937 * 119.99810 * 2 1 3 30 30 H 1.09001 * 109.46841 * 60.00162 * 6 3 2 31 31 H 1.09000 * 109.46674 * 299.99866 * 6 3 2 32 32 H 0.97001 * 119.99801 * 359.97438 * 7 6 3 33 33 H 1.07996 * 119.98294 * 0.02562 * 9 8 7 34 34 H 1.08007 * 119.92769 * 180.02562 * 10 9 8 35 35 H 1.07991 * 119.95689 * 180.26971 * 11 10 9 36 36 H 1.09002 * 109.47259 * 300.00417 * 14 13 12 37 37 H 1.09001 * 109.47074 * 60.00439 * 14 13 12 38 38 H 1.09002 * 109.47153 * 300.00307 * 15 14 13 39 39 H 1.08998 * 109.47533 * 59.99936 * 15 14 13 40 40 H 0.97002 * 119.99731 * 180.02562 * 19 18 16 41 41 H 1.08006 * 120.06150 * 180.23058 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 9 1.6699 2.0679 -1.1954 6 6 3.5649 1.4443 0.1258 7 7 4.0532 2.8256 0.1264 8 6 5.4220 3.0823 0.2314 9 6 6.3217 2.0282 0.3348 10 6 7.6754 2.2824 0.4381 11 6 8.1392 3.5844 0.4337 12 6 7.2449 4.6412 0.3360 13 8 7.7022 5.9208 0.3366 14 6 9.1150 6.1049 0.4468 15 6 9.4373 7.6005 0.4307 16 6 10.9272 7.7947 0.5463 17 1 11.5792 6.9371 0.6231 18 6 11.4582 9.0670 0.5530 19 7 10.6643 10.1114 0.4589 20 14 13.3051 9.3077 0.6970 21 1 13.9085 9.3312 -0.6598 22 1 13.5845 10.5935 1.3853 23 1 13.8904 8.1897 1.4797 24 6 5.8856 4.3904 0.2321 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.9995 0.9053 -0.7161 31 1 3.8532 0.9570 1.0572 32 1 3.4258 3.5617 0.0531 33 1 5.9624 1.0098 0.3336 34 1 8.3732 1.4619 0.5180 35 1 9.1985 3.7798 0.5102 36 1 9.4666 5.6679 1.3814 37 1 9.6116 5.6169 -0.3919 38 1 9.0857 8.0379 -0.5037 39 1 8.9408 8.0883 1.2696 40 1 11.0379 11.0065 0.4632 41 1 5.1886 5.2116 0.1523 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000442104496.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:19 Heat of formation + Delta-G solvation = -86.430005 kcal Electronic energy + Delta-G solvation = -20707.473955 eV Core-core repulsion = 17308.024465 eV Total energy + Delta-G solvation = -3399.449490 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.04621 -39.74371 -37.84570 -35.78858 -34.14131 -33.31267 -30.95612 -30.25458 -28.97063 -27.60863 -25.04291 -23.92000 -22.68249 -21.76716 -21.28818 -20.29944 -18.00983 -17.22429 -16.76773 -16.30269 -15.84341 -15.64361 -15.24737 -15.12957 -14.81992 -14.52343 -14.30124 -14.08352 -13.87824 -13.36043 -13.19081 -12.70317 -12.59807 -12.47635 -12.29911 -11.64755 -11.57644 -11.51683 -11.30816 -11.15511 -11.09786 -10.89460 -10.72528 -10.42363 -10.03006 -9.72225 -9.61861 -9.26720 -8.42648 -7.94251 -7.36404 -6.07804 -4.12182 1.71529 1.86688 3.09519 3.29248 3.35129 3.38225 3.95764 4.00577 4.11154 4.16163 4.35370 4.37032 4.44712 4.78592 4.88843 5.06483 5.11105 5.26676 5.28534 5.30535 5.35208 5.40115 5.55053 5.58661 5.67285 5.72157 5.78167 6.10289 6.10479 6.10990 6.38815 6.62539 6.67233 6.74188 6.89092 7.33736 7.53714 7.61946 7.67976 7.85924 8.13621 8.27472 8.93494 9.51873 11.03797 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.050026 B = 0.002339 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.574368 B =11969.775102 C =12425.115565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.149 4.149 3 C 0.082 3.918 4 H 0.089 0.911 5 F -0.207 7.207 6 C 0.103 3.897 7 N -0.749 5.749 8 C 0.246 3.754 9 C -0.244 4.244 10 C -0.037 4.037 11 C -0.263 4.263 12 C 0.188 3.812 13 O -0.316 6.316 14 C 0.066 3.934 15 C 0.024 3.976 16 C -0.525 4.525 17 H 0.058 0.942 18 C 0.059 3.941 19 N -0.890 5.890 20 Si 0.899 3.101 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.273 1.273 24 C -0.236 4.236 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.401 0.599 33 H 0.115 0.885 34 H 0.119 0.881 35 H 0.127 0.873 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.027 0.973 39 H 0.027 0.973 40 H 0.263 0.737 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.653 -21.513 0.410 27.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.187 4.187 3 C 0.045 3.955 4 H 0.107 0.893 5 F -0.188 7.188 6 C -0.023 4.023 7 N -0.380 5.380 8 C 0.144 3.856 9 C -0.267 4.267 10 C -0.056 4.056 11 C -0.283 4.283 12 C 0.140 3.860 13 O -0.229 6.229 14 C -0.008 4.008 15 C -0.013 4.013 16 C -0.564 4.564 17 H 0.077 0.923 18 C -0.143 4.143 19 N -0.528 5.528 20 Si 0.727 3.273 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.198 1.198 24 C -0.259 4.259 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.097 0.903 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.236 0.764 33 H 0.133 0.867 34 H 0.137 0.863 35 H 0.145 0.855 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.073 0.927 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -17.786 -21.304 0.371 27.755 hybrid contribution 0.961 0.394 -0.012 1.039 sum -16.824 -20.910 0.359 26.841 Atomic orbital electron populations 1.21763 0.94502 1.02413 1.02543 1.22073 0.97558 0.94848 1.04208 1.21876 0.94576 0.94442 0.84613 0.89300 1.92847 1.92786 1.84181 1.49019 1.21881 0.92500 0.85166 1.02718 1.44389 1.04252 1.06434 1.82957 1.17318 0.83264 0.92638 0.92417 1.20372 0.93062 0.97173 1.16090 1.20617 0.94569 0.95856 0.94524 1.21164 1.00007 0.92749 1.14399 1.18817 0.92281 0.84384 0.90527 1.86149 1.27864 1.22573 1.86269 1.23319 0.75509 1.02337 0.99624 1.19130 0.96619 0.86679 0.98840 1.20979 0.91236 0.92490 1.51651 0.92343 1.24998 0.98378 0.95905 0.94986 1.69983 1.34882 0.98284 1.49643 0.86482 0.84959 0.77649 0.78255 1.20518 1.21075 1.19766 1.19669 0.93671 0.95067 1.17508 0.92382 0.92018 0.91965 0.90341 0.89754 0.91188 0.90586 0.76417 0.86749 0.86299 0.85514 0.93074 0.93070 0.95423 0.95415 0.92741 0.85700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.83 37.16 0.37 -0.37 16 2 C -0.15 -0.72 5.70 -26.73 -0.15 -0.87 16 3 C 0.08 0.53 3.40 -26.73 -0.09 0.44 16 4 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 5 F -0.21 -1.98 16.62 2.25 0.04 -1.95 16 6 C 0.10 0.79 4.67 -4.04 -0.02 0.77 16 7 N -0.75 -7.91 5.66 -58.65 -0.33 -8.24 16 8 C 0.25 3.35 6.65 -83.81 -0.56 2.79 16 9 C -0.24 -3.15 9.31 -39.35 -0.37 -3.52 16 10 C -0.04 -0.51 10.03 -39.63 -0.40 -0.90 16 11 C -0.26 -4.33 9.04 -39.39 -0.36 -4.68 16 12 C 0.19 3.45 6.68 -39.24 -0.26 3.19 16 13 O -0.32 -6.76 10.13 -19.42 -0.20 -6.96 16 14 C 0.07 1.46 4.68 37.16 0.17 1.63 16 15 C 0.02 0.65 5.34 -27.89 -0.15 0.50 16 16 C -0.53 -14.84 9.11 -34.44 -0.31 -15.15 16 17 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -26.73 13.29 55.43 0.74 -26.00 16 20 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 24 C -0.24 -3.80 9.83 -39.24 -0.39 -4.19 16 25 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.06 0.35 7.93 -51.93 -0.41 -0.06 16 27 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.56 7.94 -51.93 -0.41 0.15 16 31 H 0.08 0.50 7.95 -51.93 -0.41 0.08 16 32 H 0.40 3.96 8.43 -40.82 -0.34 3.62 16 33 H 0.11 1.18 6.73 -52.49 -0.35 0.83 16 34 H 0.12 1.31 8.06 -52.48 -0.42 0.88 16 35 H 0.13 2.06 6.29 -52.49 -0.33 1.73 16 36 H 0.05 1.07 7.67 -51.93 -0.40 0.68 16 37 H 0.05 1.08 7.65 -51.93 -0.40 0.68 16 38 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.13 1.92 8.06 -52.48 -0.42 1.49 16 LS Contribution 346.04 15.07 5.21 5.21 Total: -1.00 -31.51 346.04 -8.58 -40.08 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -6.41 Total: 0.15 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: -2.61 Total: -18.75 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: 0.40 Total: -34.24 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -0.20 Total: -6.96 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.95 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.51 -8.58 -40.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000442104496.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.348 kcal (2) G-P(sol) polarization free energy of solvation -31.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds