Wall clock time and date at job start Tue Mar 31 2020 05:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33385 * 125.20717 * 2 1 4 4 C 1.38416 * 114.92076 * 180.29271 * 3 2 1 5 5 C 1.50703 * 122.53661 * 179.72718 * 4 3 2 6 6 N 1.46900 * 109.47151 * 83.88519 * 5 4 3 7 7 C 1.46904 * 110.99915 * 189.63482 * 6 5 4 8 8 C 1.50700 * 109.47123 * 170.02609 * 7 6 5 9 9 H 1.08004 * 119.99856 * 2.14274 * 8 7 6 10 10 C 1.37870 * 120.00274 * 182.14763 * 8 7 6 11 11 N 1.31519 * 119.99743 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 120.00303 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.46917 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.47146 * 119.99679 * 12 10 8 15 15 H 1.48495 * 109.47177 * 240.00106 * 12 10 8 16 16 C 1.46902 * 110.99909 * 65.68574 * 6 5 4 17 17 C 1.53002 * 109.47117 * 80.49632 * 16 6 5 18 18 C 1.53003 * 109.47068 * 77.72069 * 17 16 6 19 19 C 1.52999 * 109.46800 * 197.72072 * 17 16 6 20 20 C 1.52998 * 109.47024 * 317.71659 * 17 16 6 21 21 C 1.33386 * 114.92487 * 359.48851 * 4 3 2 22 22 S 1.75883 * 125.19908 * 180.02562 * 2 1 3 23 23 H 1.08998 * 109.46636 * 89.99889 * 1 2 3 24 24 H 1.08995 * 109.47258 * 210.00261 * 1 2 3 25 25 H 1.09001 * 109.46904 * 330.00111 * 1 2 3 26 26 H 1.08006 * 122.53462 * 0.02562 * 3 2 1 27 27 H 1.09007 * 109.46903 * 203.88424 * 5 4 3 28 28 H 1.08998 * 109.47301 * 323.88303 * 5 4 3 29 29 H 1.08990 * 109.47483 * 290.03194 * 7 6 5 30 30 H 1.08999 * 109.46793 * 50.03300 * 7 6 5 31 31 H 0.97001 * 119.99738 * 180.02562 * 11 10 8 32 32 H 1.09000 * 109.46696 * 200.49388 * 16 6 5 33 33 H 1.08998 * 109.47148 * 320.49223 * 16 6 5 34 34 H 1.08995 * 109.46926 * 22.20949 * 18 17 16 35 35 H 1.08999 * 109.46956 * 142.21288 * 18 17 16 36 36 H 1.09003 * 109.46648 * 262.20528 * 18 17 16 37 37 H 1.08995 * 109.47179 * 59.99525 * 19 17 16 38 38 H 1.09000 * 109.47158 * 180.02562 * 19 17 16 39 39 H 1.09005 * 109.46863 * 299.99601 * 19 17 16 40 40 H 1.09001 * 109.46844 * 63.48712 * 20 17 16 41 41 H 1.08997 * 109.46920 * 183.48119 * 20 17 16 42 42 H 1.08997 * 109.47089 * 303.48710 * 20 17 16 43 43 H 1.07997 * 125.20845 * 180.21202 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2761 1.0899 0.0000 4 6 3.6380 0.8427 -0.0064 5 6 4.6623 1.9480 -0.0135 6 7 4.8939 2.4099 1.3617 7 6 5.7088 3.6321 1.3764 8 6 5.7213 4.2108 2.7677 9 1 5.2069 3.7013 3.5692 10 6 6.3892 5.3907 3.0177 11 7 7.0151 6.0115 2.0416 12 14 6.4053 6.1078 4.7425 13 1 5.6338 5.2241 5.6531 14 1 7.8068 6.2102 5.2230 15 1 5.7888 7.4585 4.7229 16 6 5.5134 1.3544 2.1742 17 6 7.0168 1.3108 1.8934 18 6 7.7080 2.4552 2.6374 19 6 7.5863 -0.0262 2.3719 20 6 7.2593 1.4596 0.3901 21 6 3.9751 -0.4478 -0.0008 22 16 2.5209 -1.4372 -0.0006 23 1 -0.3632 0.0000 -1.0277 24 1 -0.3633 -0.8899 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.8670 2.0894 0.0004 27 1 5.5964 1.5750 -0.4337 28 1 4.2974 2.7778 -0.6188 29 1 6.7280 3.3929 1.0731 30 1 5.2850 4.3596 0.6841 31 1 7.4854 6.8414 2.2175 32 1 5.3470 1.5645 3.2307 33 1 5.0683 0.3923 1.9206 34 1 7.0833 2.7762 3.4710 35 1 8.6712 2.1131 3.0158 36 1 7.8618 3.2914 1.9554 37 1 7.0938 -0.8415 1.8419 38 1 8.6574 -0.0572 2.1723 39 1 7.4135 -0.1323 3.4429 40 1 6.9092 2.4380 0.0608 41 1 8.3254 1.3667 0.1832 42 1 6.7161 0.6805 -0.1445 43 1 4.9862 -0.8273 -0.0012 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449021478.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:58 Heat of formation + Delta-G solvation = 70.330761 kcal Electronic energy + Delta-G solvation = -21227.213502 eV Core-core repulsion = 18400.774845 eV Total energy + Delta-G solvation = -2826.438657 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.67467 -37.53969 -33.55196 -32.86590 -31.57029 -28.30708 -27.69219 -26.48173 -26.09647 -25.64107 -23.88367 -21.43369 -20.16728 -18.62947 -18.27020 -16.67945 -16.34887 -15.29107 -14.87310 -14.69793 -14.24440 -13.85770 -13.74338 -13.40421 -13.13353 -13.01113 -12.57145 -12.24305 -12.06999 -11.88906 -11.53356 -11.49794 -11.22219 -11.06697 -10.94167 -10.79524 -10.75279 -10.68346 -10.48217 -10.32530 -10.10548 -9.77890 -9.58905 -9.32261 -9.06758 -8.34416 -8.31360 -8.07381 -6.84479 -5.98666 -3.91810 1.25018 1.86360 2.21426 3.03728 3.31908 3.40593 3.44607 4.46603 4.95544 5.18274 5.28950 5.35161 5.36617 5.47797 5.50896 5.51910 5.65323 5.68317 5.86851 5.92649 5.98911 6.02543 6.14054 6.19901 6.23684 6.36014 6.37670 6.40251 6.51286 6.65346 6.76284 6.82478 6.85919 6.91773 7.02768 7.19309 7.36282 7.51194 7.84128 7.86703 8.17465 8.31659 8.63453 9.07962 9.64396 11.11732 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.020013 B = 0.005345 C = 0.004674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.777065 B = 5237.705194 C = 5989.471072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.186 4.186 3 C -0.113 4.113 4 C -0.067 4.067 5 C 0.069 3.931 6 N -0.525 5.525 7 C 0.157 3.843 8 C -0.484 4.484 9 H 0.060 0.940 10 C 0.055 3.945 11 N -0.898 5.898 12 Si 0.886 3.114 13 H -0.273 1.273 14 H -0.286 1.286 15 H -0.286 1.286 16 C 0.075 3.925 17 C -0.094 4.094 18 C -0.145 4.145 19 C -0.133 4.133 20 C -0.163 4.163 21 C -0.215 4.215 22 S 0.056 5.944 23 H 0.069 0.931 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.139 0.861 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.041 0.959 30 H 0.022 0.978 31 H 0.259 0.741 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.086 0.914 35 H 0.014 0.986 36 H 0.084 0.916 37 H 0.041 0.959 38 H 0.046 0.954 39 H 0.050 0.950 40 H 0.086 0.914 41 H 0.042 0.958 42 H 0.048 0.952 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.958 -12.999 -4.838 15.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.303 4.303 3 C -0.143 4.143 4 C -0.079 4.079 5 C -0.061 4.061 6 N -0.248 5.248 7 C 0.033 3.967 8 C -0.523 4.523 9 H 0.078 0.922 10 C -0.145 4.145 11 N -0.539 5.539 12 Si 0.714 3.286 13 H -0.198 1.198 14 H -0.212 1.212 15 H -0.212 1.212 16 C -0.053 4.053 17 C -0.096 4.096 18 C -0.201 4.201 19 C -0.191 4.191 20 C -0.219 4.219 21 C -0.351 4.351 22 S 0.319 5.681 23 H 0.088 0.912 24 H 0.083 0.917 25 H 0.094 0.906 26 H 0.157 0.843 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.058 0.942 30 H 0.040 0.960 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.105 0.895 35 H 0.033 0.967 36 H 0.103 0.897 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.104 0.896 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -6.607 -14.273 -4.661 16.404 hybrid contribution 1.194 1.788 0.663 2.250 sum -5.413 -12.484 -3.998 14.183 Atomic orbital electron populations 1.20279 0.88273 1.02879 1.02247 1.24330 0.99498 0.95465 1.11018 1.20044 0.92643 0.99187 1.02428 1.19032 0.94878 0.94265 0.99729 1.21639 0.96353 0.94620 0.93479 1.62329 1.49554 1.05335 1.07543 1.20675 0.92797 0.85276 0.97907 1.21033 1.30686 1.06091 0.94471 0.92180 1.24853 0.96105 0.96938 0.96640 1.69939 1.34988 1.17753 1.31206 0.86619 0.77572 0.79156 0.85217 1.19794 1.21217 1.21209 1.22192 0.90209 0.94100 0.98839 1.21138 0.97951 0.95509 0.95011 1.22592 0.97592 0.96989 1.02922 1.21863 0.99837 0.96776 1.00633 1.22736 1.00276 1.02575 0.96347 1.25324 1.00868 0.96071 1.12803 1.83955 0.98004 1.10612 1.75501 0.91200 0.91744 0.90617 0.84349 0.91151 0.91052 0.94236 0.95973 0.93157 0.91277 0.92852 0.89535 0.96715 0.89735 0.93944 0.93518 0.93067 0.89556 0.93890 0.93312 0.82522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.38 36.01 0.37 -0.42 16 2 C -0.19 -2.48 6.51 -36.00 -0.23 -2.72 16 3 C -0.11 -1.71 9.85 -41.21 -0.41 -2.12 16 4 C -0.07 -1.06 4.69 -106.25 -0.50 -1.56 16 5 C 0.07 1.21 4.66 -4.97 -0.02 1.19 16 6 N -0.52 -10.75 4.70 -237.51 -1.12 -11.86 16 7 C 0.16 3.76 3.66 -4.97 -0.02 3.75 16 8 C -0.48 -12.63 5.23 -34.44 -0.18 -12.81 16 9 H 0.06 1.61 7.01 -52.48 -0.37 1.24 16 10 C 0.05 1.48 5.21 -17.82 -0.09 1.38 16 11 N -0.90 -25.29 13.29 55.43 0.74 -24.56 16 12 Si 0.89 21.15 29.54 -169.99 -5.02 16.12 16 13 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 14 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 15 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 16 C 0.08 1.43 4.58 -3.82 -0.02 1.41 16 17 C -0.09 -1.68 0.77 -154.51 -0.12 -1.80 16 18 C -0.14 -3.00 7.23 37.16 0.27 -2.73 16 19 C -0.13 -2.02 8.17 37.16 0.30 -1.72 16 20 C -0.16 -2.77 6.33 37.16 0.24 -2.54 16 21 C -0.21 -3.09 9.32 29.04 0.27 -2.82 16 22 S 0.06 0.72 23.33 -107.50 -2.51 -1.79 16 23 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.14 2.07 8.06 -52.48 -0.42 1.65 16 27 H 0.07 1.18 3.17 -51.92 -0.16 1.02 16 28 H 0.07 1.29 7.94 -51.93 -0.41 0.87 16 29 H 0.04 0.96 2.09 -51.93 -0.11 0.85 16 30 H 0.02 0.59 7.94 -51.93 -0.41 0.18 16 31 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.07 1.44 6.88 -51.93 -0.36 1.08 16 33 H 0.05 0.94 5.44 -51.93 -0.28 0.65 16 34 H 0.09 1.97 5.09 -51.93 -0.26 1.71 16 35 H 0.01 0.27 7.72 -51.93 -0.40 -0.13 16 36 H 0.08 2.00 5.16 -51.93 -0.27 1.73 16 37 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.05 0.67 8.12 -51.93 -0.42 0.25 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.09 1.65 3.82 -51.93 -0.20 1.45 16 41 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.05 0.74 6.14 -51.93 -0.32 0.42 16 43 H 0.16 2.09 7.66 -52.49 -0.40 1.69 16 LS Contribution 328.14 15.07 4.95 4.95 Total: -1.00 -27.22 328.14 -9.57 -36.80 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -6.47 Total: 3.84 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: -0.14 Total: -23.50 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: -0.38 Total: -36.42 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 0.72 SS G_CDS: -2.51 Total: -1.79 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -27.22 -9.57 -36.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449021478.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.127 kcal (2) G-P(sol) polarization free energy of solvation -27.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds