Wall clock time and date at job start Tue Mar 31 2020 05:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33385 * 125.20717 * 2 1 4 4 C 1.38416 * 114.92076 * 180.29271 * 3 2 1 5 5 C 1.50703 * 122.53661 * 179.72718 * 4 3 2 6 6 N 1.46900 * 109.47151 * 83.88519 * 5 4 3 7 7 C 1.46904 * 110.99915 * 189.63482 * 6 5 4 8 8 C 1.50700 * 109.47123 * 170.02609 * 7 6 5 9 9 H 1.08004 * 119.99856 * 2.14274 * 8 7 6 10 10 C 1.37870 * 120.00274 * 182.14763 * 8 7 6 11 11 N 1.31519 * 119.99743 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 120.00303 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.46917 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.47146 * 119.99679 * 12 10 8 15 15 H 1.48495 * 109.47177 * 240.00106 * 12 10 8 16 16 C 1.46902 * 110.99909 * 65.68574 * 6 5 4 17 17 C 1.53002 * 109.47117 * 80.49632 * 16 6 5 18 18 C 1.53003 * 109.47068 * 77.72069 * 17 16 6 19 19 C 1.52999 * 109.46800 * 197.72072 * 17 16 6 20 20 C 1.52998 * 109.47024 * 317.71659 * 17 16 6 21 21 C 1.33386 * 114.92487 * 359.48851 * 4 3 2 22 22 S 1.75883 * 125.19908 * 180.02562 * 2 1 3 23 23 H 1.08998 * 109.46636 * 89.99889 * 1 2 3 24 24 H 1.08995 * 109.47258 * 210.00261 * 1 2 3 25 25 H 1.09001 * 109.46904 * 330.00111 * 1 2 3 26 26 H 1.08006 * 122.53462 * 0.02562 * 3 2 1 27 27 H 1.09007 * 109.46903 * 203.88424 * 5 4 3 28 28 H 1.08998 * 109.47301 * 323.88303 * 5 4 3 29 29 H 1.08990 * 109.47483 * 290.03194 * 7 6 5 30 30 H 1.08999 * 109.46793 * 50.03300 * 7 6 5 31 31 H 0.97001 * 119.99738 * 180.02562 * 11 10 8 32 32 H 1.09000 * 109.46696 * 200.49388 * 16 6 5 33 33 H 1.08998 * 109.47148 * 320.49223 * 16 6 5 34 34 H 1.08995 * 109.46926 * 22.20949 * 18 17 16 35 35 H 1.08999 * 109.46956 * 142.21288 * 18 17 16 36 36 H 1.09003 * 109.46648 * 262.20528 * 18 17 16 37 37 H 1.08995 * 109.47179 * 59.99525 * 19 17 16 38 38 H 1.09000 * 109.47158 * 180.02562 * 19 17 16 39 39 H 1.09005 * 109.46863 * 299.99601 * 19 17 16 40 40 H 1.09001 * 109.46844 * 63.48712 * 20 17 16 41 41 H 1.08997 * 109.46920 * 183.48119 * 20 17 16 42 42 H 1.08997 * 109.47089 * 303.48710 * 20 17 16 43 43 H 1.07997 * 125.20845 * 180.21202 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2761 1.0899 0.0000 4 6 3.6380 0.8427 -0.0064 5 6 4.6623 1.9480 -0.0135 6 7 4.8939 2.4099 1.3617 7 6 5.7088 3.6321 1.3764 8 6 5.7213 4.2108 2.7677 9 1 5.2069 3.7013 3.5692 10 6 6.3892 5.3907 3.0177 11 7 7.0151 6.0115 2.0416 12 14 6.4053 6.1078 4.7425 13 1 5.6338 5.2241 5.6531 14 1 7.8068 6.2102 5.2230 15 1 5.7888 7.4585 4.7229 16 6 5.5134 1.3544 2.1742 17 6 7.0168 1.3108 1.8934 18 6 7.7080 2.4552 2.6374 19 6 7.5863 -0.0262 2.3719 20 6 7.2593 1.4596 0.3901 21 6 3.9751 -0.4478 -0.0008 22 16 2.5209 -1.4372 -0.0006 23 1 -0.3632 0.0000 -1.0277 24 1 -0.3633 -0.8899 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.8670 2.0894 0.0004 27 1 5.5964 1.5750 -0.4337 28 1 4.2974 2.7778 -0.6188 29 1 6.7280 3.3929 1.0731 30 1 5.2850 4.3596 0.6841 31 1 7.4854 6.8414 2.2175 32 1 5.3470 1.5645 3.2307 33 1 5.0683 0.3923 1.9206 34 1 7.0833 2.7762 3.4710 35 1 8.6712 2.1131 3.0158 36 1 7.8618 3.2914 1.9554 37 1 7.0938 -0.8415 1.8419 38 1 8.6574 -0.0572 2.1723 39 1 7.4135 -0.1323 3.4429 40 1 6.9092 2.4380 0.0608 41 1 8.3254 1.3667 0.1832 42 1 6.7161 0.6805 -0.1445 43 1 4.9862 -0.8273 -0.0012 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449021478.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:58 Heat of formation + Delta-G solvation = 55.881216 kcal Electronic energy + Delta-G solvation = -21227.840082 eV Core-core repulsion = 18400.774845 eV Total energy + Delta-G solvation = -2827.065236 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.17184 -38.75260 -35.11213 -34.65712 -32.81768 -30.00043 -29.18155 -27.57829 -27.43869 -27.22113 -25.65416 -22.85757 -21.62538 -19.81855 -19.73445 -18.34603 -17.78418 -16.91348 -16.51349 -16.05668 -16.00994 -15.18928 -14.94593 -14.68729 -14.44482 -14.20399 -14.04094 -13.55359 -13.28516 -13.12625 -13.02721 -12.91783 -12.80672 -12.55075 -12.52260 -12.38979 -12.32563 -12.22925 -11.92974 -11.87778 -11.56875 -11.41493 -11.21987 -11.04036 -10.89950 -10.41475 -9.39498 -9.16095 -8.48962 -8.06449 -6.05341 0.15383 0.81920 1.11679 1.39217 1.42684 1.52436 1.85264 2.46481 3.25376 3.64469 3.93796 4.05776 4.07830 4.20867 4.23940 4.43187 4.52457 4.60427 4.71340 4.75254 4.77189 4.78045 4.82946 4.87489 4.97543 5.00194 5.13883 5.15448 5.18324 5.23573 5.27035 5.31156 5.45037 5.49412 5.56822 5.59305 5.71135 5.73037 5.84208 6.04817 6.25114 6.57060 6.83140 7.01591 7.54153 9.02737 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.020013 B = 0.005345 C = 0.004674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.777065 B = 5237.705194 C = 5989.471072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.183 4.183 3 C -0.143 4.143 4 C -0.084 4.084 5 C 0.075 3.925 6 N -0.538 5.538 7 C 0.171 3.829 8 C -0.482 4.482 9 H 0.049 0.951 10 C 0.012 3.988 11 N -0.929 5.929 12 Si 0.941 3.059 13 H -0.270 1.270 14 H -0.281 1.281 15 H -0.286 1.286 16 C 0.082 3.918 17 C -0.092 4.092 18 C -0.135 4.135 19 C -0.127 4.127 20 C -0.157 4.157 21 C -0.220 4.220 22 S 0.104 5.896 23 H 0.086 0.914 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.128 0.872 27 H 0.082 0.918 28 H 0.054 0.946 29 H 0.044 0.956 30 H -0.017 1.017 31 H 0.259 0.741 32 H 0.045 0.955 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.028 0.972 36 H 0.051 0.949 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.052 0.948 40 H 0.058 0.942 41 H 0.053 0.947 42 H 0.072 0.928 43 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.421 -15.779 -4.688 17.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.300 4.300 3 C -0.173 4.173 4 C -0.097 4.097 5 C -0.055 4.055 6 N -0.261 5.261 7 C 0.046 3.954 8 C -0.521 4.521 9 H 0.067 0.933 10 C -0.186 4.186 11 N -0.571 5.571 12 Si 0.768 3.232 13 H -0.194 1.194 14 H -0.207 1.207 15 H -0.212 1.212 16 C -0.047 4.047 17 C -0.093 4.093 18 C -0.192 4.192 19 C -0.185 4.185 20 C -0.213 4.213 21 C -0.356 4.356 22 S 0.367 5.633 23 H 0.105 0.895 24 H 0.098 0.902 25 H 0.096 0.904 26 H 0.146 0.854 27 H 0.099 0.901 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.002 0.998 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.047 0.953 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.090 0.910 43 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -7.082 -17.070 -4.507 19.022 hybrid contribution 1.264 2.578 0.582 2.929 sum -5.818 -14.492 -3.926 16.102 Atomic orbital electron populations 1.20412 0.86096 1.03770 1.03588 1.24764 1.01150 0.95332 1.08784 1.20051 0.92859 0.99562 1.04841 1.18865 0.94663 0.94269 1.01908 1.21552 0.97520 0.94913 0.91477 1.62157 1.49123 1.05026 1.09775 1.20396 0.93181 0.86070 0.95719 1.21182 1.29772 1.06005 0.95107 0.93309 1.25473 0.96025 0.97420 0.99650 1.70044 1.36033 1.18163 1.32880 0.85757 0.77631 0.78270 0.81583 1.19410 1.20728 1.21187 1.22123 0.91210 0.94177 0.97166 1.21083 0.96835 0.96112 0.95315 1.22392 0.98140 0.97137 1.01508 1.21796 1.00508 0.95240 1.00975 1.22611 1.01192 1.01730 0.95771 1.25518 1.02488 0.95843 1.11773 1.83802 0.96268 1.09066 1.74157 0.89545 0.90219 0.90368 0.85410 0.90084 0.92735 0.93872 0.99842 0.93239 0.93608 0.90815 0.92050 0.95318 0.93070 0.91729 0.92507 0.92870 0.92335 0.92841 0.90992 0.81167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.42 10.38 71.24 0.74 -0.68 16 2 C -0.18 -4.51 6.51 24.59 0.16 -4.35 16 3 C -0.14 -4.28 9.85 21.21 0.21 -4.07 16 4 C -0.08 -2.61 4.69 -20.92 -0.10 -2.71 16 5 C 0.07 2.66 4.66 85.56 0.40 3.06 16 6 N -0.54 -22.58 4.70 -905.35 -4.25 -26.83 16 7 C 0.17 8.58 3.66 85.56 0.31 8.89 16 8 C -0.48 -26.07 5.23 25.60 0.13 -25.93 16 9 H 0.05 2.71 7.01 -2.91 -0.02 2.68 16 10 C 0.01 0.64 5.21 84.65 0.44 1.08 16 11 N -0.93 -54.07 13.29 21.45 0.28 -53.78 16 12 Si 0.94 44.24 29.54 68.60 2.03 46.26 16 13 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 14 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 15 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 16 C 0.08 3.05 4.58 86.30 0.40 3.45 16 17 C -0.09 -3.17 0.77 -52.18 -0.04 -3.21 16 18 C -0.13 -5.65 7.23 71.98 0.52 -5.13 16 19 C -0.13 -3.47 8.17 71.98 0.59 -2.88 16 20 C -0.16 -5.14 6.33 71.98 0.46 -4.68 16 21 C -0.22 -5.77 9.32 66.72 0.62 -5.15 16 22 S 0.10 2.33 23.33 -56.49 -1.32 1.01 16 23 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.13 3.96 8.06 -2.91 -0.02 3.94 16 27 H 0.08 2.69 3.17 -2.38 -0.01 2.68 16 28 H 0.05 2.08 7.94 -2.39 -0.02 2.06 16 29 H 0.04 2.19 2.09 -2.39 -0.01 2.19 16 30 H -0.02 -0.94 7.94 -2.39 -0.02 -0.96 16 31 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 32 H 0.05 1.91 6.88 -2.39 -0.02 1.90 16 33 H 0.07 2.45 5.44 -2.39 -0.01 2.44 16 34 H 0.06 2.86 5.09 -2.39 -0.01 2.84 16 35 H 0.03 1.07 7.72 -2.39 -0.02 1.05 16 36 H 0.05 2.49 5.16 -2.39 -0.01 2.47 16 37 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.06 1.45 8.12 -2.39 -0.02 1.43 16 39 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 40 H 0.06 2.27 3.82 -2.39 -0.01 2.26 16 41 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.07 2.01 6.14 -2.39 -0.01 2.00 16 43 H 0.17 3.91 7.66 -2.91 -0.02 3.89 16 Total: -1.00 -60.08 328.14 2.58 -57.50 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 1.00 Total: 18.16 kcal Atomic # 6 Polarization: -47.15 SS G_CDS: 4.84 Total: -42.31 kcal Atomic # 7 Polarization: -76.65 SS G_CDS: -3.97 Total: -80.61 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 16 Polarization: 2.33 SS G_CDS: -1.32 Total: 1.01 kcal Total: -60.08 2.58 -57.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449021478.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.377 kcal (2) G-P(sol) polarization free energy of solvation -60.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds