Wall clock time and date at job start Tue Mar 31 2020 05:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33388 * 125.20547 * 2 1 4 4 C 1.38421 * 114.92066 * 180.29144 * 3 2 1 5 5 C 1.50697 * 122.53935 * 179.72463 * 4 3 2 6 6 N 1.46905 * 109.47267 * 89.99950 * 5 4 3 7 7 C 1.46903 * 110.99529 * 293.95454 * 6 5 4 8 8 C 1.50695 * 109.47257 * 69.99753 * 7 6 5 9 9 H 1.08001 * 120.00053 * 0.02562 * 8 7 6 10 10 C 1.37878 * 120.00009 * 179.97438 * 8 7 6 11 11 N 1.31515 * 120.00207 * 180.02562 * 10 8 7 12 12 Si 1.86806 * 119.99951 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.46947 * 90.00020 * 12 10 8 14 14 H 1.48499 * 109.47092 * 209.99951 * 12 10 8 15 15 H 1.48507 * 109.46940 * 329.99953 * 12 10 8 16 16 C 1.46894 * 110.99908 * 170.00279 * 6 5 4 17 17 C 1.53007 * 109.47067 * 189.99769 * 16 6 5 18 18 C 1.52992 * 109.47179 * 179.97438 * 17 16 6 19 19 C 1.53002 * 109.47161 * 174.99960 * 18 17 16 20 20 C 1.52999 * 109.47392 * 295.00085 * 18 17 16 21 21 C 1.33395 * 114.92147 * 359.48238 * 4 3 2 22 22 S 1.75885 * 125.19995 * 180.02562 * 2 1 3 23 23 H 1.09003 * 109.46744 * 90.00244 * 1 2 3 24 24 H 1.09001 * 109.47513 * 210.00718 * 1 2 3 25 25 H 1.09007 * 109.46930 * 330.00887 * 1 2 3 26 26 H 1.08002 * 122.53671 * 0.02562 * 3 2 1 27 27 H 1.09000 * 109.47001 * 209.99711 * 5 4 3 28 28 H 1.08991 * 109.47255 * 329.99646 * 5 4 3 29 29 H 1.09003 * 109.46863 * 190.00282 * 7 6 5 30 30 H 1.09006 * 109.46943 * 309.99776 * 7 6 5 31 31 H 0.96998 * 119.99728 * 180.02562 * 11 10 8 32 32 H 1.09002 * 109.47419 * 309.99439 * 16 6 5 33 33 H 1.08998 * 109.47542 * 69.99736 * 16 6 5 34 34 H 1.09002 * 109.46732 * 300.00091 * 17 16 6 35 35 H 1.09007 * 109.46803 * 59.99734 * 17 16 6 36 36 H 1.08997 * 109.47249 * 55.00065 * 18 17 16 37 37 H 1.08997 * 109.46954 * 59.99924 * 19 18 17 38 38 H 1.09002 * 109.47215 * 179.97438 * 19 18 17 39 39 H 1.09005 * 109.47040 * 300.00325 * 19 18 17 40 40 H 1.09006 * 109.47117 * 300.00307 * 20 18 17 41 41 H 1.08999 * 109.47583 * 59.99795 * 20 18 17 42 42 H 1.09002 * 109.47573 * 180.02562 * 20 18 17 43 43 H 1.07998 * 125.20353 * 180.21324 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8428 -0.0064 5 6 4.6623 1.9481 -0.0135 6 7 5.0021 2.3097 1.3692 7 6 3.8487 2.9066 2.0558 8 6 2.8051 1.8469 2.2986 9 1 2.9812 0.8315 1.9756 10 6 1.6259 2.1734 2.9340 11 7 0.7153 1.2486 3.1464 12 14 1.3215 3.9296 3.4933 13 1 0.6550 4.6875 2.4040 14 1 0.4504 3.9222 4.6959 15 1 2.6172 4.5752 3.8246 16 6 6.1617 3.2106 1.4078 17 6 6.6390 3.3659 2.8532 18 6 7.8471 4.3036 2.8934 19 6 8.2472 4.5579 4.3482 20 6 9.0177 3.6597 2.1477 21 6 3.9751 -0.4479 -0.0006 22 16 2.5209 -1.4372 -0.0006 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3633 0.8901 0.5137 26 1 1.8669 2.0894 0.0004 27 1 5.5595 1.6086 -0.5312 28 1 4.2540 2.8185 -0.5269 29 1 4.1702 3.3252 3.0094 30 1 3.4261 3.6974 1.4358 31 1 -0.1144 1.4784 3.5931 32 1 6.9664 2.7933 0.8024 33 1 5.8777 4.1857 1.0122 34 1 5.8343 3.7832 3.4586 35 1 6.9230 2.3907 3.2488 36 1 7.5890 5.2494 2.4170 37 1 8.5053 3.6122 4.8246 38 1 9.1083 5.2257 4.3768 39 1 7.4133 5.0167 4.8795 40 1 9.2758 2.7139 2.6242 41 1 8.7327 3.4785 1.1113 42 1 9.8786 4.3276 2.1767 43 1 4.9862 -0.8272 -0.0009 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449023838.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:50 Heat of formation + Delta-G solvation = 30.086274 kcal Electronic energy + Delta-G solvation = -20802.808176 eV Core-core repulsion = 17974.624387 eV Total energy + Delta-G solvation = -2828.183789 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.54459 -36.90114 -34.91878 -32.51358 -31.20758 -29.01039 -28.05677 -27.08425 -25.54537 -24.91549 -22.60958 -20.95345 -19.81653 -19.55458 -17.84075 -16.94216 -16.10074 -15.24726 -14.84791 -14.51469 -14.29400 -13.81251 -13.46782 -13.23058 -12.92465 -12.80380 -12.47723 -12.31972 -12.20420 -12.08644 -11.74055 -11.58129 -11.44314 -11.16724 -11.16523 -10.82722 -10.77129 -10.56809 -10.51789 -10.38337 -10.17403 -9.88094 -9.76208 -9.71605 -9.01894 -8.54266 -7.44371 -7.33723 -7.11796 -5.99304 -3.87301 2.16503 2.77573 3.09297 3.25060 3.34291 3.37155 3.84345 4.42638 4.78975 5.04549 5.07756 5.22865 5.31628 5.60606 5.66346 5.70502 5.81653 5.81795 5.86397 5.91424 5.95813 6.07039 6.08030 6.14991 6.24555 6.24817 6.26624 6.35687 6.36903 6.42479 6.58096 6.71455 6.73832 6.85826 6.91606 6.96441 7.33942 7.49973 7.63751 7.67973 7.92809 8.04308 8.68911 9.14830 9.58906 11.08830 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015544 B = 0.006382 C = 0.004863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.924581 B = 4386.578797 C = 5755.920945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C -0.183 4.183 3 C -0.051 4.051 4 C -0.052 4.052 5 C 0.124 3.876 6 N -0.524 5.524 7 C 0.155 3.845 8 C -0.494 4.494 9 H 0.107 0.893 10 C 0.073 3.927 11 N -0.877 5.877 12 Si 0.858 3.142 13 H -0.280 1.280 14 H -0.288 1.288 15 H -0.270 1.270 16 C 0.056 3.944 17 C -0.111 4.111 18 C -0.097 4.097 19 C -0.146 4.146 20 C -0.146 4.146 21 C -0.220 4.220 22 S 0.015 5.985 23 H 0.046 0.954 24 H 0.054 0.946 25 H 0.075 0.925 26 H 0.125 0.875 27 H 0.064 0.936 28 H 0.030 0.970 29 H 0.032 0.968 30 H -0.019 1.019 31 H 0.260 0.740 32 H 0.064 0.936 33 H 0.019 0.981 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.049 0.951 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.047 0.953 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.918 2.572 -5.068 10.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.299 4.299 3 C -0.079 4.079 4 C -0.065 4.065 5 C -0.006 4.006 6 N -0.248 5.248 7 C 0.029 3.971 8 C -0.531 4.531 9 H 0.125 0.875 10 C -0.130 4.130 11 N -0.514 5.514 12 Si 0.686 3.314 13 H -0.207 1.207 14 H -0.214 1.214 15 H -0.195 1.195 16 C -0.073 4.073 17 C -0.149 4.149 18 C -0.116 4.116 19 C -0.203 4.203 20 C -0.203 4.203 21 C -0.356 4.356 22 S 0.277 5.723 23 H 0.065 0.935 24 H 0.073 0.927 25 H 0.094 0.906 26 H 0.143 0.857 27 H 0.082 0.918 28 H 0.048 0.952 29 H 0.050 0.950 30 H -0.002 1.002 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.037 0.963 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 8.567 0.553 -4.727 9.800 hybrid contribution -0.232 3.299 0.348 3.326 sum 8.335 3.852 -4.379 10.173 Atomic orbital electron populations 1.20014 0.89240 1.03027 0.99429 1.23558 0.98592 0.93912 1.13811 1.19453 0.91737 0.98612 0.98117 1.18484 0.94348 0.93452 1.00231 1.20567 0.95524 0.94680 0.89833 1.62048 1.06417 1.42385 1.13956 1.20339 0.88669 0.94608 0.93515 1.21523 0.98409 0.98027 1.35170 0.87538 1.24821 0.96346 0.95848 0.95967 1.69910 1.07547 1.32249 1.41740 0.87128 0.78442 0.87092 0.78707 1.20659 1.21384 1.19465 1.22101 0.93919 0.94405 0.96834 1.21662 0.96512 0.99727 0.96980 1.21110 0.95625 0.98952 0.95896 1.21822 1.00796 1.01380 0.96291 1.21874 0.97460 1.00499 1.00480 1.24825 1.00151 0.95942 1.14637 1.83583 0.98522 1.12308 1.77885 0.93547 0.92664 0.90635 0.85738 0.91807 0.95220 0.95043 1.00183 0.93001 0.91735 0.96260 0.91583 0.91170 0.91766 0.92669 0.93209 0.92792 0.92681 0.92533 0.93401 0.83656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.13 10.38 36.01 0.37 -0.76 16 2 C -0.18 -3.87 6.31 -36.00 -0.23 -4.10 16 3 C -0.05 -1.10 6.18 -41.21 -0.25 -1.36 16 4 C -0.05 -1.06 3.42 -106.25 -0.36 -1.42 16 5 C 0.12 2.32 5.22 -4.97 -0.03 2.30 16 6 N -0.52 -10.53 4.56 -237.51 -1.08 -11.62 16 7 C 0.15 3.58 3.63 -4.98 -0.02 3.56 16 8 C -0.49 -12.89 6.01 -34.44 -0.21 -13.09 16 9 H 0.11 3.02 4.81 -52.49 -0.25 2.76 16 10 C 0.07 1.95 5.46 -17.82 -0.10 1.85 16 11 N -0.88 -24.48 13.96 55.43 0.77 -23.71 16 12 Si 0.86 20.63 27.47 -169.99 -4.67 15.96 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 15 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 16 C 0.06 0.92 4.71 -3.82 -0.02 0.90 16 17 C -0.11 -1.73 4.64 -26.73 -0.12 -1.85 16 18 C -0.10 -1.20 2.92 -90.62 -0.26 -1.47 16 19 C -0.15 -1.67 9.19 37.16 0.34 -1.32 16 20 C -0.15 -1.60 8.95 37.16 0.33 -1.27 16 21 C -0.22 -4.32 10.69 29.04 0.31 -4.01 16 22 S 0.02 0.30 23.33 -107.50 -2.51 -2.20 16 23 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 26 H 0.12 2.86 7.72 -52.49 -0.41 2.45 16 27 H 0.06 1.04 7.91 -51.93 -0.41 0.63 16 28 H 0.03 0.55 8.00 -51.93 -0.42 0.13 16 29 H 0.03 0.75 5.04 -51.93 -0.26 0.49 16 30 H -0.02 -0.46 7.41 -51.93 -0.38 -0.84 16 31 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.06 0.94 6.35 -51.93 -0.33 0.61 16 33 H 0.02 0.32 8.12 -51.93 -0.42 -0.11 16 34 H 0.07 1.16 6.31 -51.93 -0.33 0.83 16 35 H 0.07 1.15 8.14 -51.92 -0.42 0.72 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.61 6.56 -51.93 -0.34 0.27 16 42 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.15 2.55 8.06 -52.49 -0.42 2.13 16 LS Contribution 343.80 15.07 5.18 5.18 Total: -1.00 -27.45 343.80 -9.92 -37.36 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -7.37 Total: 1.06 kcal Atomic # 6 Polarization: -21.80 SS G_CDS: -0.24 Total: -22.04 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: -0.31 Total: -35.33 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.67 Total: 15.96 kcal Atomic # 16 Polarization: 0.30 SS G_CDS: -2.51 Total: -2.20 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -27.45 -9.92 -37.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449023838.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.449 kcal (2) G-P(sol) polarization free energy of solvation -27.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds