Wall clock time and date at job start Tue Mar 31 2020 05:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33388 * 125.20547 * 2 1 4 4 C 1.38421 * 114.92066 * 180.29144 * 3 2 1 5 5 C 1.50697 * 122.53935 * 179.72463 * 4 3 2 6 6 N 1.46905 * 109.47267 * 89.99950 * 5 4 3 7 7 C 1.46903 * 110.99529 * 293.95454 * 6 5 4 8 8 C 1.50695 * 109.47257 * 69.99753 * 7 6 5 9 9 H 1.08001 * 120.00053 * 0.02562 * 8 7 6 10 10 C 1.37878 * 120.00009 * 179.97438 * 8 7 6 11 11 N 1.31515 * 120.00207 * 180.02562 * 10 8 7 12 12 Si 1.86806 * 119.99951 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.46947 * 90.00020 * 12 10 8 14 14 H 1.48499 * 109.47092 * 209.99951 * 12 10 8 15 15 H 1.48507 * 109.46940 * 329.99953 * 12 10 8 16 16 C 1.46894 * 110.99908 * 170.00279 * 6 5 4 17 17 C 1.53007 * 109.47067 * 189.99769 * 16 6 5 18 18 C 1.52992 * 109.47179 * 179.97438 * 17 16 6 19 19 C 1.53002 * 109.47161 * 174.99960 * 18 17 16 20 20 C 1.52999 * 109.47392 * 295.00085 * 18 17 16 21 21 C 1.33395 * 114.92147 * 359.48238 * 4 3 2 22 22 S 1.75885 * 125.19995 * 180.02562 * 2 1 3 23 23 H 1.09003 * 109.46744 * 90.00244 * 1 2 3 24 24 H 1.09001 * 109.47513 * 210.00718 * 1 2 3 25 25 H 1.09007 * 109.46930 * 330.00887 * 1 2 3 26 26 H 1.08002 * 122.53671 * 0.02562 * 3 2 1 27 27 H 1.09000 * 109.47001 * 209.99711 * 5 4 3 28 28 H 1.08991 * 109.47255 * 329.99646 * 5 4 3 29 29 H 1.09003 * 109.46863 * 190.00282 * 7 6 5 30 30 H 1.09006 * 109.46943 * 309.99776 * 7 6 5 31 31 H 0.96998 * 119.99728 * 180.02562 * 11 10 8 32 32 H 1.09002 * 109.47419 * 309.99439 * 16 6 5 33 33 H 1.08998 * 109.47542 * 69.99736 * 16 6 5 34 34 H 1.09002 * 109.46732 * 300.00091 * 17 16 6 35 35 H 1.09007 * 109.46803 * 59.99734 * 17 16 6 36 36 H 1.08997 * 109.47249 * 55.00065 * 18 17 16 37 37 H 1.08997 * 109.46954 * 59.99924 * 19 18 17 38 38 H 1.09002 * 109.47215 * 179.97438 * 19 18 17 39 39 H 1.09005 * 109.47040 * 300.00325 * 19 18 17 40 40 H 1.09006 * 109.47117 * 300.00307 * 20 18 17 41 41 H 1.08999 * 109.47583 * 59.99795 * 20 18 17 42 42 H 1.09002 * 109.47573 * 180.02562 * 20 18 17 43 43 H 1.07998 * 125.20353 * 180.21324 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8428 -0.0064 5 6 4.6623 1.9481 -0.0135 6 7 5.0021 2.3097 1.3692 7 6 3.8487 2.9066 2.0558 8 6 2.8051 1.8469 2.2986 9 1 2.9812 0.8315 1.9756 10 6 1.6259 2.1734 2.9340 11 7 0.7153 1.2486 3.1464 12 14 1.3215 3.9296 3.4933 13 1 0.6550 4.6875 2.4040 14 1 0.4504 3.9222 4.6959 15 1 2.6172 4.5752 3.8246 16 6 6.1617 3.2106 1.4078 17 6 6.6390 3.3659 2.8532 18 6 7.8471 4.3036 2.8934 19 6 8.2472 4.5579 4.3482 20 6 9.0177 3.6597 2.1477 21 6 3.9751 -0.4479 -0.0006 22 16 2.5209 -1.4372 -0.0006 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3633 0.8901 0.5137 26 1 1.8669 2.0894 0.0004 27 1 5.5595 1.6086 -0.5312 28 1 4.2540 2.8185 -0.5269 29 1 4.1702 3.3252 3.0094 30 1 3.4261 3.6974 1.4358 31 1 -0.1144 1.4784 3.5931 32 1 6.9664 2.7933 0.8024 33 1 5.8777 4.1857 1.0122 34 1 5.8343 3.7832 3.4586 35 1 6.9230 2.3907 3.2488 36 1 7.5890 5.2494 2.4170 37 1 8.5053 3.6122 4.8246 38 1 9.1083 5.2257 4.3768 39 1 7.4133 5.0167 4.8795 40 1 9.2758 2.7139 2.6242 41 1 8.7327 3.4785 1.1113 42 1 9.8786 4.3276 2.1767 43 1 4.9862 -0.8272 -0.0009 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449023838.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:50 Heat of formation + Delta-G solvation = 15.982150 kcal Electronic energy + Delta-G solvation = -20803.419777 eV Core-core repulsion = 17974.624387 eV Total energy + Delta-G solvation = -2828.795390 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.10889 -38.20058 -36.27560 -34.48903 -32.76966 -30.52167 -29.68762 -27.96712 -27.15917 -26.40028 -24.26184 -22.45312 -21.35693 -20.72939 -19.46200 -18.88993 -17.68090 -16.70764 -16.34217 -16.01390 -15.76134 -15.20259 -14.94874 -14.68829 -14.49806 -14.23820 -14.09579 -13.84812 -13.58938 -13.36477 -13.19717 -12.99629 -12.81960 -12.75366 -12.61995 -12.45804 -12.17049 -12.08884 -11.92113 -11.67956 -11.51122 -11.41666 -11.28029 -11.23393 -10.93824 -10.56672 -9.04283 -8.94346 -8.75210 -8.03965 -5.94196 0.55332 1.18074 1.31655 1.37808 1.42704 1.46644 2.20945 2.42873 3.26385 3.40357 3.98485 4.03377 4.14662 4.25098 4.33287 4.45131 4.52725 4.63143 4.66508 4.69653 4.71439 4.82519 4.84972 4.86844 4.88409 4.92063 5.01733 5.08220 5.10309 5.14302 5.22919 5.24208 5.34403 5.35454 5.52945 5.57836 5.66458 5.76728 5.88459 6.01768 6.19063 6.45543 6.79121 7.06104 7.54251 9.05290 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015544 B = 0.006382 C = 0.004863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.924581 B = 4386.578797 C = 5755.920945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C -0.198 4.198 3 C -0.064 4.064 4 C -0.067 4.067 5 C 0.125 3.875 6 N -0.536 5.536 7 C 0.166 3.834 8 C -0.488 4.488 9 H 0.084 0.916 10 C 0.031 3.969 11 N -0.910 5.910 12 Si 0.906 3.094 13 H -0.278 1.278 14 H -0.292 1.292 15 H -0.263 1.263 16 C 0.057 3.943 17 C -0.107 4.107 18 C -0.092 4.092 19 C -0.145 4.145 20 C -0.142 4.142 21 C -0.219 4.219 22 S 0.036 5.964 23 H 0.076 0.924 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.104 0.896 27 H 0.095 0.905 28 H 0.030 0.970 29 H 0.023 0.977 30 H -0.027 1.027 31 H 0.257 0.743 32 H 0.090 0.910 33 H 0.022 0.978 34 H 0.039 0.961 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.053 0.947 38 H 0.068 0.932 39 H 0.044 0.956 40 H 0.053 0.947 41 H 0.058 0.942 42 H 0.064 0.936 43 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.008 2.963 -5.897 12.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.314 4.314 3 C -0.093 4.093 4 C -0.080 4.080 5 C -0.005 4.005 6 N -0.260 5.260 7 C 0.039 3.961 8 C -0.526 4.526 9 H 0.102 0.898 10 C -0.168 4.168 11 N -0.550 5.550 12 Si 0.733 3.267 13 H -0.204 1.204 14 H -0.218 1.218 15 H -0.188 1.188 16 C -0.071 4.071 17 C -0.144 4.144 18 C -0.111 4.111 19 C -0.202 4.202 20 C -0.200 4.200 21 C -0.355 4.355 22 S 0.298 5.702 23 H 0.095 0.905 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.122 0.878 27 H 0.113 0.887 28 H 0.048 0.952 29 H 0.041 0.959 30 H -0.009 1.009 31 H 0.066 0.934 32 H 0.108 0.892 33 H 0.040 0.960 34 H 0.058 0.942 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 10.680 0.954 -5.566 12.081 hybrid contribution -0.855 3.080 0.544 3.242 sum 9.826 4.034 -5.022 11.749 Atomic orbital electron populations 1.19994 0.88469 1.01820 1.00999 1.23934 0.99642 0.94844 1.12957 1.19447 0.92812 0.97829 0.99188 1.18645 0.94131 0.94489 1.00727 1.20647 0.96366 0.94194 0.89278 1.61975 1.06121 1.43206 1.14731 1.20075 0.89160 0.93455 0.93430 1.21606 0.98975 0.97713 1.34339 0.89832 1.25328 0.96482 0.98466 0.96547 1.70017 1.07947 1.33652 1.43348 0.86359 0.78320 0.83961 0.78059 1.20444 1.21810 1.18794 1.22207 0.93046 0.94039 0.97765 1.21615 0.97063 0.99799 0.95973 1.21077 0.94847 0.98324 0.96894 1.21821 1.01200 1.01728 0.95498 1.21843 0.97244 1.00686 1.00186 1.25162 1.01183 0.95663 1.13469 1.83454 0.98224 1.11254 1.77266 0.90507 0.92769 0.92865 0.87788 0.88708 0.95208 0.95868 1.00923 0.93391 0.89182 0.95975 0.94228 0.92204 0.91444 0.92772 0.91277 0.93728 0.92813 0.92294 0.91683 0.81277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -2.11 10.38 71.24 0.74 -1.37 16 2 C -0.20 -8.39 6.31 24.59 0.16 -8.23 16 3 C -0.06 -2.80 6.18 21.22 0.13 -2.67 16 4 C -0.07 -2.67 3.42 -20.92 -0.07 -2.74 16 5 C 0.12 4.45 5.22 85.56 0.45 4.90 16 6 N -0.54 -20.86 4.56 -905.36 -4.13 -24.99 16 7 C 0.17 7.65 3.63 85.55 0.31 7.96 16 8 C -0.49 -25.77 6.01 25.60 0.15 -25.61 16 9 H 0.08 4.78 4.81 -2.91 -0.01 4.77 16 10 C 0.03 1.70 5.46 84.65 0.46 2.16 16 11 N -0.91 -52.02 13.96 21.45 0.30 -51.72 16 12 Si 0.91 43.12 27.47 68.60 1.88 45.00 16 13 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 14 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 15 H -0.26 -12.14 6.54 99.48 0.65 -11.49 16 16 C 0.06 1.75 4.71 86.31 0.41 2.16 16 17 C -0.11 -3.19 4.64 30.59 0.14 -3.05 16 18 C -0.09 -2.10 2.92 -10.80 -0.03 -2.13 16 19 C -0.15 -3.04 9.19 71.98 0.66 -2.38 16 20 C -0.14 -2.68 8.95 71.98 0.64 -2.03 16 21 C -0.22 -8.24 10.69 66.72 0.71 -7.53 16 22 S 0.04 1.39 23.33 -56.49 -1.32 0.07 16 23 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 24 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 25 H 0.05 2.30 8.14 -2.38 -0.02 2.28 16 26 H 0.10 4.93 7.72 -2.91 -0.02 4.90 16 27 H 0.09 2.77 7.91 -2.39 -0.02 2.75 16 28 H 0.03 1.06 8.00 -2.39 -0.02 1.04 16 29 H 0.02 1.11 5.04 -2.39 -0.01 1.10 16 30 H -0.03 -1.26 7.41 -2.38 -0.02 -1.28 16 31 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 32 H 0.09 2.33 6.35 -2.39 -0.02 2.31 16 33 H 0.02 0.68 8.12 -2.39 -0.02 0.66 16 34 H 0.04 1.38 6.31 -2.39 -0.02 1.36 16 35 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 36 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 40 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 41 H 0.06 1.08 6.56 -2.39 -0.02 1.06 16 42 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.17 5.45 8.06 -2.91 -0.02 5.42 16 Total: -1.00 -58.87 343.80 2.51 -56.37 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 0.91 Total: 15.84 kcal Atomic # 6 Polarization: -45.43 SS G_CDS: 4.86 Total: -40.56 kcal Atomic # 7 Polarization: -72.88 SS G_CDS: -3.83 Total: -76.71 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 1.88 Total: 45.00 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -1.32 Total: 0.07 kcal Total: -58.87 2.51 -56.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449023838.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.347 kcal (2) G-P(sol) polarization free energy of solvation -58.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds