Wall clock time and date at job start Tue Mar 31 2020 05:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33383 * 125.20681 * 2 1 4 4 C 1.38422 * 114.92604 * 179.97438 * 3 2 1 5 5 C 1.50695 * 122.54531 * 180.02562 * 4 3 2 6 6 H 1.09009 * 109.46649 * 340.00063 * 5 4 3 7 7 C 1.52996 * 109.47512 * 100.00059 * 5 4 3 8 8 N 1.46897 * 109.47363 * 220.00437 * 5 4 3 9 9 C 1.46904 * 111.00230 * 154.99823 * 8 5 4 10 10 C 1.53002 * 109.46898 * 179.97438 * 9 8 5 11 11 C 1.52997 * 109.47440 * 299.99972 * 10 9 8 12 12 C 1.53005 * 109.46948 * 59.99994 * 10 9 8 13 13 C 1.52998 * 109.46867 * 179.97438 * 10 9 8 14 14 C 1.50701 * 109.47128 * 180.02562 * 13 10 9 15 15 H 1.08001 * 119.99786 * 359.97438 * 14 13 10 16 16 C 1.37880 * 120.00119 * 180.02562 * 14 13 10 17 17 N 1.31515 * 119.99940 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99934 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47146 * 0.02562 * 18 16 14 20 20 H 1.48510 * 109.46635 * 120.00158 * 18 16 14 21 21 H 1.48502 * 109.47399 * 239.99930 * 18 16 14 22 22 C 1.33390 * 114.91870 * 0.02562 * 4 3 2 23 23 S 1.75889 * 125.19988 * 179.97438 * 2 1 3 24 24 H 1.08998 * 109.47147 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46957 * 300.01258 * 1 2 3 26 26 H 1.09001 * 109.46459 * 60.01450 * 1 2 3 27 27 H 1.08006 * 122.53711 * 359.94933 * 3 2 1 28 28 H 1.08999 * 109.47278 * 60.00164 * 7 5 4 29 29 H 1.09002 * 109.47299 * 180.02562 * 7 5 4 30 30 H 1.09004 * 109.46925 * 300.00392 * 7 5 4 31 31 H 1.00901 * 111.00444 * 31.03941 * 8 5 4 32 32 H 1.08996 * 109.47005 * 299.99662 * 9 8 5 33 33 H 1.08997 * 109.47163 * 59.99670 * 9 8 5 34 34 H 1.08997 * 109.47267 * 59.99964 * 11 10 9 35 35 H 1.08998 * 109.47097 * 180.02562 * 11 10 9 36 36 H 1.08997 * 109.46938 * 300.00227 * 11 10 9 37 37 H 1.08996 * 109.47297 * 59.99832 * 12 10 9 38 38 H 1.08998 * 109.46979 * 179.97438 * 12 10 9 39 39 H 1.08997 * 109.47089 * 299.99625 * 12 10 9 40 40 H 1.08996 * 109.47219 * 300.00070 * 13 10 9 41 41 H 1.08997 * 109.46980 * 60.00098 * 13 10 9 42 42 H 0.96991 * 120.00201 * 180.02562 * 17 16 14 43 43 H 1.07998 * 125.20728 * 180.02562 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0898 0.0000 4 6 3.6380 0.8428 0.0006 5 6 4.6624 1.9480 0.0012 6 1 4.2012 2.8710 -0.3503 7 6 5.1922 2.1516 1.4220 8 7 5.7737 1.5862 -0.8887 9 6 6.4627 2.7851 -1.3849 10 6 7.6115 2.3687 -2.3056 11 6 8.5997 1.4983 -1.5266 12 6 7.0546 1.5740 -3.4886 13 6 8.3286 3.6173 -2.8229 14 6 9.4598 3.2072 -3.7303 15 1 9.6486 2.1607 -3.9187 16 6 10.2543 4.1681 -4.3190 17 7 10.0253 5.4424 -4.0882 18 14 11.6569 3.6597 -5.4431 19 1 11.7035 2.1785 -5.5377 20 1 11.4410 4.2351 -6.7951 21 1 12.9408 4.1616 -4.8909 22 6 3.9751 -0.4478 0.0005 23 16 2.5209 -1.4373 0.0006 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5140 0.8898 26 1 -0.3632 0.5136 -0.8902 27 1 1.8670 2.0894 -0.0008 28 1 5.6534 1.2287 1.7735 29 1 5.9329 2.9513 1.4225 30 1 4.3675 2.4201 2.0823 31 1 5.4525 1.0113 -1.6531 32 1 5.7586 3.4053 -1.9395 33 1 6.8597 3.3509 -0.5421 34 1 8.0886 0.6088 -1.1584 35 1 9.4183 1.2021 -2.1824 36 1 8.9964 2.0644 -0.6838 37 1 6.3506 2.1940 -4.0436 38 1 7.8730 1.2778 -4.1447 39 1 6.5435 0.6845 -3.1204 40 1 7.6244 4.2369 -3.3780 41 1 8.7253 4.1837 -1.9803 42 1 10.5840 6.1183 -4.5026 43 1 4.9862 -0.8273 0.0013 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453219201.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:37 Heat of formation + Delta-G solvation = 6.119222 kcal Electronic energy + Delta-G solvation = -19923.966671 eV Core-core repulsion = 17094.743593 eV Total energy + Delta-G solvation = -2829.223078 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.12008 -37.31237 -34.80981 -32.48140 -31.54594 -29.40459 -26.89511 -26.81690 -26.30825 -25.36584 -23.89877 -22.29757 -20.44575 -18.86307 -17.97306 -17.07207 -16.23236 -15.89678 -14.71271 -14.67214 -14.28002 -14.15033 -13.85635 -13.43495 -13.31037 -12.98421 -12.73822 -12.52957 -12.29913 -12.14337 -11.98153 -11.93970 -11.71151 -11.41018 -11.21413 -10.96205 -10.85339 -10.73371 -10.56688 -10.47534 -10.22360 -10.07761 -9.65537 -9.00426 -8.80568 -8.67763 -8.43050 -8.30301 -8.07818 -5.94691 -3.94542 0.92034 1.53803 1.89739 2.60556 3.33421 3.41273 3.44875 4.36127 4.51279 4.70352 4.90952 5.05791 5.25020 5.25994 5.33872 5.41261 5.48411 5.50997 5.68338 5.72112 5.83193 5.86390 5.93374 6.01318 6.06470 6.25529 6.30945 6.33476 6.37892 6.47585 6.56093 6.68996 6.82648 6.85780 7.23748 7.26880 7.29076 7.44616 7.70756 7.74428 7.88362 8.06016 8.50616 9.11170 9.68224 11.17075 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.034070 B = 0.003182 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.647076 B = 8796.396499 C = 8969.082522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.183 4.183 3 C -0.133 4.133 4 C -0.101 4.101 5 C 0.141 3.859 6 H 0.048 0.952 7 C -0.131 4.131 8 N -0.680 5.680 9 C 0.070 3.930 10 C -0.058 4.058 11 C -0.115 4.115 12 C -0.129 4.129 13 C 0.034 3.966 14 C -0.505 4.505 15 H 0.059 0.941 16 C 0.054 3.946 17 N -0.898 5.898 18 Si 0.887 3.113 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.285 1.285 22 C -0.189 4.189 23 S 0.079 5.921 24 H 0.065 0.935 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.136 0.864 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.340 0.660 32 H 0.023 0.977 33 H 0.067 0.933 34 H 0.042 0.958 35 H 0.053 0.947 36 H 0.039 0.961 37 H 0.039 0.961 38 H 0.064 0.936 39 H 0.032 0.968 40 H 0.012 0.988 41 H 0.015 0.985 42 H 0.258 0.742 43 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.515 -10.959 9.885 22.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.300 4.300 3 C -0.164 4.164 4 C -0.113 4.113 5 C 0.029 3.971 6 H 0.066 0.934 7 C -0.190 4.190 8 N -0.313 5.313 9 C -0.059 4.059 10 C -0.058 4.058 11 C -0.172 4.172 12 C -0.186 4.186 13 C -0.004 4.004 14 C -0.544 4.544 15 H 0.078 0.922 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.715 3.285 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.212 1.212 22 C -0.325 4.325 23 S 0.343 5.657 24 H 0.084 0.916 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.154 0.846 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.160 0.840 32 H 0.041 0.959 33 H 0.085 0.915 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.083 0.917 39 H 0.051 0.949 40 H 0.030 0.970 41 H 0.033 0.967 42 H 0.068 0.932 43 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -17.291 -12.470 10.356 23.701 hybrid contribution 0.520 1.787 -1.334 2.290 sum -16.771 -10.684 9.022 21.835 Atomic orbital electron populations 1.20301 0.88020 1.02679 1.02864 1.24393 0.99763 0.95709 1.10136 1.19957 0.92463 0.99305 1.04653 1.19008 0.94095 0.94688 1.03559 1.20156 0.88554 0.93260 0.95131 0.93382 1.21747 1.00400 1.02376 0.94437 1.60713 1.26978 1.20475 1.23091 1.22162 0.95646 0.90299 0.97762 1.20620 0.93583 0.98261 0.93345 1.21586 0.98406 0.98259 0.98969 1.21766 1.00513 0.97957 0.98363 1.19123 0.94628 0.90900 0.95736 1.21283 1.13347 0.92735 1.26992 0.92248 1.25019 0.97685 0.95017 0.96921 1.69974 1.39632 0.99648 1.44530 0.86616 0.82531 0.78673 0.80668 1.19774 1.21214 1.21162 1.25457 1.01698 0.95787 1.09536 1.84209 0.97534 1.10035 1.73882 0.91612 0.90720 0.90676 0.84582 0.92044 0.92186 0.93072 0.83983 0.95879 0.91486 0.93940 0.92767 0.94202 0.94157 0.91750 0.94859 0.96958 0.96693 0.93244 0.81207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.38 36.01 0.37 -0.19 16 2 C -0.18 -1.81 6.51 -36.00 -0.23 -2.05 16 3 C -0.13 -1.44 9.82 -41.21 -0.40 -1.85 16 4 C -0.10 -1.20 4.61 -106.25 -0.49 -1.69 16 5 C 0.14 1.80 2.91 -68.87 -0.20 1.60 16 6 H 0.05 0.63 7.74 -51.92 -0.40 0.23 16 7 C -0.13 -1.58 9.40 37.16 0.35 -1.24 16 8 N -0.68 -9.84 5.17 -107.95 -0.56 -10.39 16 9 C 0.07 1.21 4.45 -3.82 -0.02 1.19 16 10 C -0.06 -1.15 0.60 -154.51 -0.09 -1.24 16 11 C -0.11 -2.22 8.07 37.16 0.30 -1.92 16 12 C -0.13 -2.42 7.89 37.16 0.29 -2.13 16 13 C 0.03 0.85 4.04 -27.88 -0.11 0.74 16 14 C -0.51 -13.88 7.65 -34.44 -0.26 -14.14 16 15 H 0.06 1.59 5.68 -52.49 -0.30 1.30 16 16 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 17 N -0.90 -26.97 13.29 55.43 0.74 -26.24 16 18 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 19 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 C -0.19 -2.16 10.23 29.04 0.30 -1.86 16 23 S 0.08 0.80 23.33 -107.50 -2.51 -1.71 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.14 1.31 8.06 -52.48 -0.42 0.89 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.76 7.45 -51.93 -0.39 0.38 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.34 4.92 6.08 -39.29 -0.24 4.68 16 32 H 0.02 0.41 8.05 -51.93 -0.42 -0.01 16 33 H 0.07 1.19 7.44 -51.93 -0.39 0.80 16 34 H 0.04 0.73 7.60 -51.93 -0.39 0.34 16 35 H 0.05 1.13 6.62 -51.93 -0.34 0.78 16 36 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.06 1.31 6.62 -51.93 -0.34 0.97 16 39 H 0.03 0.53 6.57 -51.93 -0.34 0.19 16 40 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.17 1.92 8.03 -52.49 -0.42 1.50 16 LS Contribution 352.18 15.07 5.31 5.31 Total: -1.00 -29.10 352.18 -9.68 -38.78 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -7.34 Total: 0.92 kcal Atomic # 6 Polarization: -23.04 SS G_CDS: -0.30 Total: -23.35 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: 0.18 Total: -36.63 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 0.80 SS G_CDS: -2.51 Total: -1.71 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.10 -9.68 -38.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453219201.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.896 kcal (2) G-P(sol) polarization free energy of solvation -29.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds