Wall clock time and date at job start Tue Mar 31 2020 05:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33383 * 125.20681 * 2 1 4 4 C 1.38422 * 114.92604 * 179.97438 * 3 2 1 5 5 C 1.50695 * 122.54531 * 180.02562 * 4 3 2 6 6 H 1.09009 * 109.46649 * 340.00063 * 5 4 3 7 7 C 1.52996 * 109.47512 * 100.00059 * 5 4 3 8 8 N 1.46897 * 109.47363 * 220.00437 * 5 4 3 9 9 C 1.46904 * 111.00230 * 154.99823 * 8 5 4 10 10 C 1.53002 * 109.46898 * 179.97438 * 9 8 5 11 11 C 1.52997 * 109.47440 * 299.99972 * 10 9 8 12 12 C 1.53005 * 109.46948 * 59.99994 * 10 9 8 13 13 C 1.52998 * 109.46867 * 179.97438 * 10 9 8 14 14 C 1.50701 * 109.47128 * 180.02562 * 13 10 9 15 15 H 1.08001 * 119.99786 * 359.97438 * 14 13 10 16 16 C 1.37880 * 120.00119 * 180.02562 * 14 13 10 17 17 N 1.31515 * 119.99940 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99934 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47146 * 0.02562 * 18 16 14 20 20 H 1.48510 * 109.46635 * 120.00158 * 18 16 14 21 21 H 1.48502 * 109.47399 * 239.99930 * 18 16 14 22 22 C 1.33390 * 114.91870 * 0.02562 * 4 3 2 23 23 S 1.75889 * 125.19988 * 179.97438 * 2 1 3 24 24 H 1.08998 * 109.47147 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46957 * 300.01258 * 1 2 3 26 26 H 1.09001 * 109.46459 * 60.01450 * 1 2 3 27 27 H 1.08006 * 122.53711 * 359.94933 * 3 2 1 28 28 H 1.08999 * 109.47278 * 60.00164 * 7 5 4 29 29 H 1.09002 * 109.47299 * 180.02562 * 7 5 4 30 30 H 1.09004 * 109.46925 * 300.00392 * 7 5 4 31 31 H 1.00901 * 111.00444 * 31.03941 * 8 5 4 32 32 H 1.08996 * 109.47005 * 299.99662 * 9 8 5 33 33 H 1.08997 * 109.47163 * 59.99670 * 9 8 5 34 34 H 1.08997 * 109.47267 * 59.99964 * 11 10 9 35 35 H 1.08998 * 109.47097 * 180.02562 * 11 10 9 36 36 H 1.08997 * 109.46938 * 300.00227 * 11 10 9 37 37 H 1.08996 * 109.47297 * 59.99832 * 12 10 9 38 38 H 1.08998 * 109.46979 * 179.97438 * 12 10 9 39 39 H 1.08997 * 109.47089 * 299.99625 * 12 10 9 40 40 H 1.08996 * 109.47219 * 300.00070 * 13 10 9 41 41 H 1.08997 * 109.46980 * 60.00098 * 13 10 9 42 42 H 0.96991 * 120.00201 * 180.02562 * 17 16 14 43 43 H 1.07998 * 125.20728 * 180.02562 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0898 0.0000 4 6 3.6380 0.8428 0.0006 5 6 4.6624 1.9480 0.0012 6 1 4.2012 2.8710 -0.3503 7 6 5.1922 2.1516 1.4220 8 7 5.7737 1.5862 -0.8887 9 6 6.4627 2.7851 -1.3849 10 6 7.6115 2.3687 -2.3056 11 6 8.5997 1.4983 -1.5266 12 6 7.0546 1.5740 -3.4886 13 6 8.3286 3.6173 -2.8229 14 6 9.4598 3.2072 -3.7303 15 1 9.6486 2.1607 -3.9187 16 6 10.2543 4.1681 -4.3190 17 7 10.0253 5.4424 -4.0882 18 14 11.6569 3.6597 -5.4431 19 1 11.7035 2.1785 -5.5377 20 1 11.4410 4.2351 -6.7951 21 1 12.9408 4.1616 -4.8909 22 6 3.9751 -0.4478 0.0005 23 16 2.5209 -1.4373 0.0006 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5140 0.8898 26 1 -0.3632 0.5136 -0.8902 27 1 1.8670 2.0894 -0.0008 28 1 5.6534 1.2287 1.7735 29 1 5.9329 2.9513 1.4225 30 1 4.3675 2.4201 2.0823 31 1 5.4525 1.0113 -1.6531 32 1 5.7586 3.4053 -1.9395 33 1 6.8597 3.3509 -0.5421 34 1 8.0886 0.6088 -1.1584 35 1 9.4183 1.2021 -2.1824 36 1 8.9964 2.0644 -0.6838 37 1 6.3506 2.1940 -4.0436 38 1 7.8730 1.2778 -4.1447 39 1 6.5435 0.6845 -3.1204 40 1 7.6244 4.2369 -3.3780 41 1 8.7253 4.1837 -1.9803 42 1 10.5840 6.1183 -4.5026 43 1 4.9862 -0.8273 0.0013 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453219201.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:36 Heat of formation + Delta-G solvation = -8.766148 kcal Electronic energy + Delta-G solvation = -19924.612150 eV Core-core repulsion = 17094.743593 eV Total energy + Delta-G solvation = -2829.868556 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.13432 -38.71893 -36.06312 -34.40276 -32.53102 -30.58405 -28.80849 -27.90147 -27.61237 -26.76211 -25.18630 -23.91782 -21.37907 -19.88300 -19.40218 -18.33712 -17.96200 -17.09722 -16.53074 -15.77099 -15.57131 -15.18702 -15.05993 -14.71943 -14.42719 -14.20725 -13.97871 -13.88334 -13.58835 -13.39005 -13.14593 -12.98730 -12.85641 -12.76076 -12.62713 -12.55459 -12.27518 -12.24300 -12.12963 -11.99600 -11.84303 -11.50807 -11.34566 -10.84966 -10.72205 -10.50806 -9.46343 -9.31277 -9.25248 -8.13803 -6.20589 0.11378 0.76045 1.08621 1.39963 1.41042 1.53207 1.75874 2.43851 3.20208 3.24568 3.83290 4.08601 4.18092 4.20227 4.34307 4.39761 4.41808 4.54735 4.56987 4.73111 4.75662 4.76416 4.78534 4.93656 4.97057 5.02016 5.08947 5.12768 5.20133 5.22335 5.25454 5.36837 5.46498 5.52568 5.54726 5.59359 5.60951 5.67401 5.88217 5.93578 6.14379 6.37938 6.53029 6.94817 7.46715 8.98824 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.034070 B = 0.003182 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.647076 B = 8796.396499 C = 8969.082522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.180 4.180 3 C -0.151 4.151 4 C -0.107 4.107 5 C 0.143 3.857 6 H 0.044 0.956 7 C -0.127 4.127 8 N -0.672 5.672 9 C 0.083 3.917 10 C -0.054 4.054 11 C -0.105 4.105 12 C -0.121 4.121 13 C 0.040 3.960 14 C -0.512 4.512 15 H 0.066 0.934 16 C -0.005 4.005 17 N -0.938 5.938 18 Si 0.956 3.044 19 H -0.261 1.261 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.203 4.203 23 S 0.096 5.904 24 H 0.074 0.926 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.145 0.855 28 H 0.059 0.941 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.343 0.657 32 H 0.015 0.985 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.037 0.963 36 H 0.030 0.970 37 H 0.034 0.966 38 H 0.047 0.953 39 H 0.065 0.935 40 H -0.017 1.017 41 H -0.016 1.016 42 H 0.259 0.741 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.614 -12.885 10.053 24.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.298 4.298 3 C -0.181 4.181 4 C -0.120 4.120 5 C 0.031 3.969 6 H 0.062 0.938 7 C -0.185 4.185 8 N -0.305 5.305 9 C -0.046 4.046 10 C -0.055 4.055 11 C -0.162 4.162 12 C -0.179 4.179 13 C 0.003 3.997 14 C -0.550 4.550 15 H 0.084 0.916 16 C -0.201 4.201 17 N -0.580 5.580 18 Si 0.781 3.219 19 H -0.185 1.185 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.338 4.338 23 S 0.360 5.640 24 H 0.093 0.907 25 H 0.105 0.895 26 H 0.102 0.898 27 H 0.163 0.837 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.163 0.837 32 H 0.033 0.967 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.056 0.944 36 H 0.049 0.951 37 H 0.054 0.946 38 H 0.066 0.934 39 H 0.084 0.916 40 H 0.001 0.999 41 H 0.003 0.997 42 H 0.068 0.932 43 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -18.400 -14.418 10.530 25.639 hybrid contribution 0.784 2.374 -1.342 2.838 sum -17.616 -12.044 9.188 23.234 Atomic orbital electron populations 1.20420 0.86047 1.03658 1.03870 1.24794 1.01156 0.95260 1.08556 1.20072 0.92170 1.00159 1.05736 1.18943 0.94277 0.94375 1.04382 1.20147 0.88238 0.93688 0.94856 0.93767 1.21706 1.00624 1.01874 0.94315 1.60656 1.27937 1.18884 1.23012 1.21857 0.94771 0.91196 0.96766 1.20483 0.94371 0.96075 0.94522 1.21483 0.97798 0.98846 0.98113 1.21674 0.99939 0.98858 0.97391 1.19001 0.94014 0.92616 0.94087 1.21652 1.13611 0.93014 1.26769 0.91613 1.25919 1.00542 0.94999 0.98688 1.70113 1.41036 1.00859 1.45963 0.85531 0.79032 0.78875 0.78439 1.18460 1.20834 1.20836 1.25526 1.02383 0.96045 1.09875 1.84153 0.96719 1.09753 1.73351 0.90664 0.89482 0.89805 0.83749 0.92198 0.93250 0.91621 0.83699 0.96650 0.92259 0.91370 0.94371 0.95054 0.94649 0.93425 0.91639 0.99882 0.99715 0.93181 0.81306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.93 10.38 71.24 0.74 -0.20 16 2 C -0.18 -3.17 6.51 24.59 0.16 -3.01 16 3 C -0.15 -3.00 9.82 21.21 0.21 -2.80 16 4 C -0.11 -2.37 4.61 -20.92 -0.10 -2.46 16 5 C 0.14 3.48 2.91 44.17 0.13 3.61 16 6 H 0.04 1.13 7.74 -2.38 -0.02 1.11 16 7 C -0.13 -2.93 9.40 71.98 0.68 -2.25 16 8 N -0.67 -18.63 5.17 -495.46 -2.56 -21.20 16 9 C 0.08 2.88 4.45 86.30 0.38 3.26 16 10 C -0.05 -2.16 0.60 -52.18 -0.03 -2.19 16 11 C -0.11 -4.00 8.07 71.98 0.58 -3.42 16 12 C -0.12 -4.45 7.89 71.98 0.57 -3.88 16 13 C 0.04 2.11 4.04 29.85 0.12 2.23 16 14 C -0.51 -28.56 7.65 25.60 0.20 -28.36 16 15 H 0.07 3.52 5.68 -2.91 -0.02 3.51 16 16 C 0.00 -0.28 5.46 84.66 0.46 0.18 16 17 N -0.94 -57.76 13.29 21.45 0.28 -57.47 16 18 Si 0.96 44.78 29.54 68.60 2.03 46.81 16 19 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 20 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 21 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 22 C -0.20 -4.28 10.23 66.72 0.68 -3.59 16 23 S 0.10 1.73 23.33 -56.49 -1.32 0.42 16 24 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.14 2.54 8.06 -2.91 -0.02 2.51 16 28 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.05 1.23 7.45 -2.39 -0.02 1.21 16 30 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 31 H 0.34 9.26 6.08 -89.69 -0.55 8.72 16 32 H 0.02 0.55 8.05 -2.39 -0.02 0.53 16 33 H 0.06 2.14 7.44 -2.39 -0.02 2.12 16 34 H 0.07 2.23 7.60 -2.39 -0.02 2.21 16 35 H 0.04 1.55 6.62 -2.39 -0.02 1.54 16 36 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.05 1.90 6.62 -2.39 -0.02 1.88 16 39 H 0.06 1.97 6.57 -2.39 -0.02 1.95 16 40 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 41 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 42 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 43 H 0.17 3.53 8.03 -2.91 -0.02 3.51 16 Total: -1.00 -62.82 352.18 3.64 -59.18 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: 0.43 Total: 15.16 kcal Atomic # 6 Polarization: -47.67 SS G_CDS: 4.78 Total: -42.90 kcal Atomic # 7 Polarization: -76.39 SS G_CDS: -2.28 Total: -78.67 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -1.32 Total: 0.42 kcal Total: -62.82 3.64 -59.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453219201.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.413 kcal (2) G-P(sol) polarization free energy of solvation -62.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds