Wall clock time and date at job start Tue Mar 31 2020 05:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33380 * 125.20446 * 2 1 4 4 C 1.38424 * 114.91979 * 179.85799 * 3 2 1 5 5 C 1.50702 * 122.54015 * 180.20000 * 4 3 2 6 6 H 1.09000 * 109.47286 * 20.27715 * 5 4 3 7 7 C 1.52998 * 109.47348 * 260.27430 * 5 4 3 8 8 N 1.46901 * 109.46955 * 140.27394 * 5 4 3 9 9 C 1.46898 * 111.00160 * 205.00308 * 8 5 4 10 10 C 1.53002 * 109.47390 * 180.02562 * 9 8 5 11 11 C 1.52998 * 109.47014 * 300.00025 * 10 9 8 12 12 C 1.53004 * 109.46968 * 60.00122 * 10 9 8 13 13 C 1.52999 * 109.47205 * 179.97438 * 10 9 8 14 14 C 1.50698 * 109.47335 * 180.02562 * 13 10 9 15 15 H 1.07998 * 119.99743 * 0.02562 * 14 13 10 16 16 C 1.37875 * 120.00343 * 179.97438 * 14 13 10 17 17 N 1.31513 * 120.00153 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 119.99761 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.46833 * 90.00217 * 18 16 14 20 20 H 1.48499 * 109.47286 * 209.99669 * 18 16 14 21 21 H 1.48496 * 109.47599 * 330.00516 * 18 16 14 22 22 C 1.33387 * 114.92317 * 0.43559 * 4 3 2 23 23 S 1.75886 * 109.59281 * 359.76596 * 22 4 3 24 24 H 1.08995 * 109.47411 * 179.71626 * 1 2 3 25 25 H 1.08998 * 109.46596 * 299.71565 * 1 2 3 26 26 H 1.09004 * 109.46950 * 59.71385 * 1 2 3 27 27 H 1.08001 * 122.54115 * 0.02562 * 3 2 1 28 28 H 1.08992 * 109.47039 * 60.00008 * 7 5 4 29 29 H 1.09002 * 109.47000 * 180.02562 * 7 5 4 30 30 H 1.09004 * 109.47273 * 299.99875 * 7 5 4 31 31 H 1.00901 * 111.00171 * 328.95342 * 8 5 4 32 32 H 1.09008 * 109.47137 * 300.00130 * 9 8 5 33 33 H 1.09002 * 109.47538 * 59.99844 * 9 8 5 34 34 H 1.08999 * 109.47104 * 60.00042 * 11 10 9 35 35 H 1.09001 * 109.47131 * 180.02562 * 11 10 9 36 36 H 1.09002 * 109.46744 * 299.99534 * 11 10 9 37 37 H 1.08991 * 109.47229 * 59.99870 * 12 10 9 38 38 H 1.09004 * 109.46929 * 180.02562 * 12 10 9 39 39 H 1.09000 * 109.46492 * 299.99631 * 12 10 9 40 40 H 1.09008 * 109.47253 * 299.99994 * 13 10 9 41 41 H 1.08997 * 109.47507 * 59.99354 * 13 10 9 42 42 H 0.97002 * 120.00054 * 180.02562 * 17 16 14 43 43 H 1.07997 * 125.20749 * 179.75076 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8427 0.0031 5 6 4.6624 1.9480 0.0080 6 1 4.2014 2.8691 0.3648 7 6 5.1916 2.1593 -1.4119 8 7 5.7741 1.5813 0.8954 9 6 6.4633 2.7773 1.3980 10 6 7.6125 2.3559 2.3159 11 6 7.0562 1.5548 3.4947 12 6 8.6004 1.4899 1.5316 13 6 8.3306 3.6017 2.8387 14 6 9.4630 3.1867 3.7424 15 1 9.6519 2.1392 3.9251 16 6 10.2585 4.1442 4.3350 17 7 11.2471 3.7820 5.1232 18 14 9.9332 5.9560 4.0172 19 1 8.9820 6.4737 5.0334 20 1 11.2091 6.7107 4.1038 21 1 9.3496 6.1240 2.6621 22 6 3.9751 -0.4478 -0.0036 23 16 2.5209 -1.4373 -0.0077 24 1 -0.3634 -1.0276 -0.0051 25 1 -0.3632 0.5094 0.8925 26 1 -0.3633 0.5183 -0.8874 27 1 1.8670 2.0894 0.0004 28 1 4.3667 2.4314 -2.0703 29 1 5.9329 2.9585 -1.4082 30 1 5.6526 1.2383 -1.7686 31 1 5.4532 1.0022 1.6569 32 1 6.8600 3.3479 0.5581 33 1 5.7594 3.3946 1.9563 34 1 6.5449 0.6673 3.1218 35 1 7.8749 1.2550 4.1489 36 1 6.3525 2.1719 4.0534 37 1 8.9967 2.0606 0.6918 38 1 9.4190 1.1894 2.1856 39 1 8.0890 0.6025 1.1588 40 1 8.7270 4.1721 1.9986 41 1 7.6271 4.2191 3.3973 42 1 11.8065 4.4557 5.5404 43 1 4.9862 -0.8272 -0.0063 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453219205.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:39 Heat of formation + Delta-G solvation = -6.097983 kcal Electronic energy + Delta-G solvation = -19972.610245 eV Core-core repulsion = 17142.857389 eV Total energy + Delta-G solvation = -2829.752856 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.13649 -38.75891 -36.05976 -34.39543 -32.57106 -30.70904 -29.30853 -27.92912 -27.61059 -26.70407 -25.00965 -23.63778 -21.36248 -19.85657 -19.35962 -18.86491 -17.97177 -17.06101 -16.34744 -15.79852 -15.61450 -15.16701 -15.09787 -14.88954 -14.43877 -14.23558 -14.08004 -13.95193 -13.67761 -13.38888 -13.14394 -13.01243 -12.88158 -12.81767 -12.62871 -12.53337 -12.26244 -12.19201 -12.08477 -11.96873 -11.71000 -11.50218 -11.34048 -10.97039 -10.80363 -10.69608 -9.46323 -9.28538 -9.25591 -8.21392 -6.21634 0.11697 0.76006 1.09330 1.35678 1.37780 1.48884 1.76469 2.39865 3.13704 3.24774 3.83760 4.07589 4.15324 4.18311 4.32793 4.36357 4.41674 4.55431 4.56989 4.73400 4.74134 4.76331 4.78223 4.91313 4.94448 5.02833 5.05371 5.10368 5.13276 5.19312 5.23930 5.37536 5.38939 5.44330 5.47621 5.53761 5.61125 5.63966 5.76622 5.82876 6.18663 6.42625 6.53213 6.85838 7.40869 8.94942 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.031923 B = 0.003348 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.907513 B = 8362.415965 C = 8546.689981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.180 4.180 3 C -0.150 4.150 4 C -0.106 4.106 5 C 0.144 3.856 6 H 0.050 0.950 7 C -0.128 4.128 8 N -0.677 5.677 9 C 0.080 3.920 10 C -0.047 4.047 11 C -0.123 4.123 12 C -0.107 4.107 13 C -0.003 4.003 14 C -0.503 4.503 15 H 0.044 0.956 16 C 0.000 4.000 17 N -0.956 5.956 18 Si 0.941 3.059 19 H -0.271 1.271 20 H -0.289 1.289 21 H -0.249 1.249 22 C -0.204 4.204 23 S 0.090 5.910 24 H 0.073 0.927 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.147 0.853 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.343 0.657 32 H 0.068 0.932 33 H 0.026 0.974 34 H 0.063 0.937 35 H 0.036 0.964 36 H 0.042 0.958 37 H 0.038 0.962 38 H 0.026 0.974 39 H 0.066 0.934 40 H 0.014 0.986 41 H 0.011 0.989 42 H 0.262 0.738 43 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.078 -6.767 -13.816 27.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.298 4.298 3 C -0.180 4.180 4 C -0.119 4.119 5 C 0.032 3.968 6 H 0.068 0.932 7 C -0.186 4.186 8 N -0.310 5.310 9 C -0.049 4.049 10 C -0.048 4.048 11 C -0.181 4.181 12 C -0.164 4.164 13 C -0.040 4.040 14 C -0.541 4.541 15 H 0.062 0.938 16 C -0.195 4.195 17 N -0.598 5.598 18 Si 0.766 3.234 19 H -0.196 1.196 20 H -0.215 1.215 21 H -0.172 1.172 22 C -0.340 4.340 23 S 0.354 5.646 24 H 0.092 0.908 25 H 0.102 0.898 26 H 0.106 0.894 27 H 0.165 0.835 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.163 0.837 32 H 0.086 0.914 33 H 0.044 0.956 34 H 0.082 0.918 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.045 0.955 39 H 0.085 0.915 40 H 0.032 0.968 41 H 0.029 0.971 42 H 0.071 0.929 43 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -22.797 -8.385 -14.250 28.161 hybrid contribution 0.440 2.616 1.094 2.869 sum -22.357 -5.769 -13.156 26.575 Atomic orbital electron populations 1.20419 0.86080 1.03609 1.03895 1.24796 1.01130 0.95226 1.08624 1.20082 0.92129 1.00169 1.05626 1.18973 0.94357 0.94362 1.04201 1.20152 0.88105 0.93696 0.94845 0.93235 1.21713 1.00673 1.01870 0.94321 1.60633 1.28077 1.18928 1.23322 1.21917 0.94623 0.91395 0.96942 1.20340 0.94392 0.95609 0.94439 1.21685 0.99747 0.99154 0.97497 1.21494 0.97671 0.99161 0.98116 1.19592 0.94527 0.94806 0.95114 1.21435 1.12688 0.93798 1.26189 0.93790 1.25927 0.94893 1.03770 0.94941 1.70067 1.20679 1.35273 1.33742 0.85794 0.77526 0.80090 0.80037 1.19608 1.21485 1.17227 1.25520 1.02254 0.96158 1.10045 1.84207 0.96935 1.09996 1.73413 0.90796 0.89763 0.89438 0.83503 0.91674 0.92863 0.92504 0.83734 0.91384 0.95590 0.91789 0.94524 0.93857 0.94308 0.95465 0.91535 0.96818 0.97111 0.92909 0.81482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.88 10.38 71.24 0.74 -0.14 16 2 C -0.18 -3.03 6.51 24.59 0.16 -2.87 16 3 C -0.15 -2.78 9.82 21.21 0.21 -2.57 16 4 C -0.11 -2.20 4.61 -20.92 -0.10 -2.30 16 5 C 0.14 3.17 2.91 44.17 0.13 3.30 16 6 H 0.05 1.10 7.74 -2.39 -0.02 1.08 16 7 C -0.13 -2.66 9.40 71.98 0.68 -1.98 16 8 N -0.68 -17.28 5.17 -495.43 -2.56 -19.85 16 9 C 0.08 2.44 4.44 86.30 0.38 2.83 16 10 C -0.05 -1.78 0.60 -52.18 -0.03 -1.81 16 11 C -0.12 -4.50 7.89 71.98 0.57 -3.94 16 12 C -0.11 -4.06 8.06 71.98 0.58 -3.48 16 13 C 0.00 -0.12 3.11 29.85 0.09 -0.03 16 14 C -0.50 -28.46 8.20 25.60 0.21 -28.25 16 15 H 0.04 2.73 5.92 -2.91 -0.02 2.71 16 16 C 0.00 0.01 5.47 84.65 0.46 0.48 16 17 N -0.96 -60.56 13.96 21.45 0.30 -60.27 16 18 Si 0.94 44.96 27.47 68.60 1.88 46.84 16 19 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 20 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 21 H -0.25 -11.06 6.54 99.48 0.65 -10.41 16 22 C -0.20 -4.20 10.23 66.72 0.68 -3.51 16 23 S 0.09 1.61 23.33 -56.49 -1.32 0.29 16 24 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16 28 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.05 1.16 7.45 -2.39 -0.02 1.15 16 30 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 31 H 0.34 8.74 6.08 -89.69 -0.55 8.20 16 32 H 0.07 2.08 7.44 -2.38 -0.02 2.06 16 33 H 0.03 0.78 8.06 -2.39 -0.02 0.76 16 34 H 0.06 1.94 6.57 -2.39 -0.02 1.93 16 35 H 0.04 1.56 6.62 -2.39 -0.02 1.54 16 36 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.03 1.18 6.62 -2.39 -0.02 1.16 16 39 H 0.07 2.20 7.60 -2.39 -0.02 2.18 16 40 H 0.01 0.63 7.20 -2.38 -0.02 0.62 16 41 H 0.01 0.49 7.57 -2.39 -0.02 0.47 16 42 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 43 H 0.17 3.46 8.03 -2.91 -0.02 3.44 16 Total: -1.00 -63.96 348.58 3.44 -60.52 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 0.37 Total: 16.74 kcal Atomic # 6 Polarization: -49.05 SS G_CDS: 4.77 Total: -44.28 kcal Atomic # 7 Polarization: -77.85 SS G_CDS: -2.26 Total: -80.11 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.88 Total: 46.84 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -1.32 Total: 0.29 kcal Total: -63.96 3.44 -60.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453219205.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.419 kcal (2) G-P(sol) polarization free energy of solvation -63.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds