Wall clock time and date at job start Tue Mar 31 2020 05:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47522 * 2 1 4 4 H 1.09005 * 109.46992 * 54.71794 * 3 2 1 5 5 N 1.46894 * 109.47522 * 174.71632 * 3 2 1 6 6 C 1.46901 * 111.00337 * 273.01502 * 5 3 2 7 7 C 1.53000 * 109.47371 * 185.37237 * 6 5 3 8 8 C 1.52995 * 109.47080 * 300.00087 * 7 6 5 9 9 C 1.53002 * 109.47118 * 59.99855 * 7 6 5 10 10 C 1.52995 * 109.47328 * 179.97438 * 7 6 5 11 11 C 1.50697 * 109.47496 * 179.97438 * 10 7 6 12 12 H 1.08004 * 119.99760 * 0.02562 * 11 10 7 13 13 C 1.37873 * 120.00219 * 179.97438 * 11 10 7 14 14 N 1.31516 * 120.00255 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99855 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47368 * 60.00408 * 15 13 11 17 17 H 1.48496 * 109.46903 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47061 * 299.99847 * 15 13 11 19 19 C 1.50703 * 109.47181 * 294.71984 * 3 2 1 20 20 C 1.38427 * 122.53642 * 99.73164 * 19 3 2 21 21 C 1.33391 * 114.91580 * 179.76109 * 20 19 3 22 22 S 1.75884 * 109.59407 * 0.48118 * 21 20 19 23 23 C 1.33388 * 122.53925 * 280.02263 * 19 3 2 24 24 H 1.09006 * 109.47130 * 305.68060 * 1 2 3 25 25 H 1.09004 * 109.47622 * 185.68033 * 1 2 3 26 26 H 1.09005 * 109.47207 * 65.67923 * 1 2 3 27 27 H 1.09008 * 109.46920 * 119.99927 * 2 1 3 28 28 H 1.08997 * 109.47122 * 239.99785 * 2 1 3 29 29 H 1.00906 * 110.99578 * 36.96716 * 5 3 2 30 30 H 1.09001 * 109.47188 * 305.37474 * 6 5 3 31 31 H 1.09001 * 109.47215 * 65.37179 * 6 5 3 32 32 H 1.08997 * 109.47492 * 60.00036 * 8 7 6 33 33 H 1.09005 * 109.47447 * 179.97438 * 8 7 6 34 34 H 1.08996 * 109.47395 * 299.99962 * 8 7 6 35 35 H 1.09009 * 109.47095 * 60.00093 * 9 7 6 36 36 H 1.08993 * 109.47379 * 179.97438 * 9 7 6 37 37 H 1.09003 * 109.47322 * 300.00467 * 9 7 6 38 38 H 1.09001 * 109.47362 * 300.00317 * 10 7 6 39 39 H 1.09001 * 109.47083 * 60.00048 * 10 7 6 40 40 H 0.96998 * 119.99857 * 179.97438 * 14 13 11 41 41 H 1.07998 * 122.54150 * 0.02562 * 20 19 3 42 42 H 1.08000 * 125.20333 * 180.20950 * 21 20 19 43 43 H 1.08000 * 125.20017 * 359.97438 * 23 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6015 1.9829 0.8389 5 7 3.5034 1.4444 0.1275 6 6 3.9090 1.4150 1.5391 7 6 5.4297 1.5529 1.6359 8 6 6.0953 0.3948 0.8899 9 6 5.8624 2.8796 1.0085 10 6 5.8520 1.5230 3.1061 11 6 7.3498 1.6582 3.2015 12 1 7.9414 1.7561 2.3032 13 6 7.9649 1.6579 4.4354 14 7 7.2445 1.5392 5.5293 15 14 9.8216 1.8262 4.5535 16 1 10.2418 3.1133 3.9436 17 1 10.2314 1.7971 5.9805 18 1 10.4676 0.7015 3.8304 19 6 1.6473 2.1141 -1.2906 20 6 0.5562 2.9605 -1.3875 21 6 0.3507 3.4757 -2.6006 22 16 1.5731 2.8730 -3.7123 23 6 2.3215 1.9337 -2.4274 24 1 -0.3634 0.5994 0.8348 25 1 -0.3634 -1.0226 0.1017 26 1 -0.3634 0.4233 -0.9365 27 1 1.8933 -0.5139 0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 3.9118 0.6751 -0.3821 30 1 3.4347 2.2401 2.0707 31 1 3.6007 0.4699 1.9862 32 1 5.7944 0.4166 -0.1575 33 1 7.1787 0.4933 0.9585 34 1 5.7870 -0.5503 1.3369 35 1 5.3882 3.7047 1.5400 36 1 6.9457 2.9780 1.0778 37 1 5.5615 2.9014 -0.0390 38 1 5.3777 2.3483 3.6373 39 1 5.5436 0.5781 3.5536 40 1 7.6773 1.5386 6.3974 41 1 -0.0778 3.1898 -0.5439 42 1 -0.4472 4.1553 -2.8614 43 1 3.1937 1.3070 -2.5412 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453233728.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:19 Heat of formation + Delta-G solvation = 8.207216 kcal Electronic energy + Delta-G solvation = -20199.776160 eV Core-core repulsion = 17370.643624 eV Total energy + Delta-G solvation = -2829.132536 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.20386 -37.23841 -34.97853 -32.59567 -31.44077 -29.48421 -27.05351 -26.30156 -26.18669 -24.70402 -23.56075 -22.26698 -20.89237 -18.75498 -18.11922 -17.36232 -16.20131 -15.74346 -14.93119 -14.85355 -14.48353 -14.24707 -13.69293 -13.35243 -12.98100 -12.78734 -12.67437 -12.65340 -12.39476 -12.04597 -11.98974 -11.77102 -11.53605 -11.24614 -11.08970 -10.92445 -10.83308 -10.76188 -10.60208 -10.45440 -10.24080 -10.10996 -9.64923 -9.00130 -8.83998 -8.75406 -8.37771 -8.29528 -8.02544 -5.94326 -3.94338 1.04772 1.67548 1.99772 2.73922 3.36022 3.40563 3.42916 4.38015 4.52259 4.84975 4.92657 5.03902 5.14122 5.28654 5.41131 5.42201 5.51426 5.64572 5.69195 5.73946 5.84145 5.90413 5.94531 6.01129 6.09752 6.15586 6.29324 6.35325 6.38639 6.54074 6.55034 6.70853 6.83478 6.86532 7.23976 7.26584 7.29759 7.42952 7.67374 7.73010 7.88283 8.06104 8.50772 9.10886 9.68353 11.17342 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.028014 B = 0.003528 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.271012 B = 7935.672640 C = 8426.857847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.148 4.148 3 C 0.143 3.857 4 H 0.084 0.916 5 N -0.677 5.677 6 C 0.071 3.929 7 C -0.056 4.056 8 C -0.128 4.128 9 C -0.115 4.115 10 C 0.034 3.966 11 C -0.507 4.507 12 H 0.058 0.942 13 C 0.055 3.945 14 N -0.898 5.898 15 Si 0.887 3.113 16 H -0.277 1.277 17 H -0.289 1.289 18 H -0.278 1.278 19 C -0.080 4.080 20 C -0.123 4.123 21 C -0.218 4.218 22 S 0.070 5.930 23 C -0.187 4.187 24 H 0.054 0.946 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.338 0.662 30 H 0.065 0.935 31 H 0.024 0.976 32 H 0.033 0.967 33 H 0.063 0.937 34 H 0.039 0.961 35 H 0.038 0.962 36 H 0.053 0.947 37 H 0.043 0.957 38 H 0.014 0.986 39 H 0.012 0.988 40 H 0.259 0.741 41 H 0.136 0.864 42 H 0.160 0.840 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.702 -0.396 -15.765 21.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.187 4.187 3 C 0.030 3.970 4 H 0.102 0.898 5 N -0.308 5.308 6 C -0.057 4.057 7 C -0.057 4.057 8 C -0.185 4.185 9 C -0.172 4.172 10 C -0.003 4.003 11 C -0.545 4.545 12 H 0.076 0.924 13 C -0.146 4.146 14 N -0.538 5.538 15 Si 0.715 3.285 16 H -0.203 1.203 17 H -0.215 1.215 18 H -0.204 1.204 19 C -0.092 4.092 20 C -0.154 4.154 21 C -0.353 4.353 22 S 0.333 5.667 23 C -0.322 4.322 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.157 0.843 30 H 0.084 0.916 31 H 0.042 0.958 32 H 0.052 0.948 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.033 0.967 39 H 0.030 0.970 40 H 0.069 0.931 41 H 0.154 0.846 42 H 0.177 0.823 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -14.313 0.517 -17.173 22.362 hybrid contribution 0.534 -0.997 1.983 2.282 sum -13.780 -0.480 -15.191 20.515 Atomic orbital electron populations 1.21704 0.95474 1.01337 1.01904 1.22243 0.96908 0.97341 1.02208 1.20253 0.89267 0.93723 0.93756 0.89790 1.60622 1.05996 1.50678 1.13455 1.22146 0.97504 0.99365 0.86733 1.20605 0.90878 0.95090 0.99109 1.21753 1.01961 0.97574 0.97216 1.21588 1.00873 0.96119 0.98663 1.19116 0.96130 0.96825 0.88275 1.21206 0.92302 1.49017 0.91986 0.92369 1.25009 0.97793 0.95711 0.96042 1.69956 1.35195 1.51090 0.97575 0.86733 0.86287 0.78620 0.76813 1.20309 1.21453 1.20370 1.18832 0.95555 0.99263 0.95582 1.20070 0.98800 0.98859 0.97690 1.25470 1.04765 1.08045 0.97029 1.84201 1.24289 1.43979 1.14253 1.25295 1.05061 1.06709 0.95183 0.92724 0.93064 0.92524 0.91524 0.91858 0.84316 0.91606 0.95754 0.94831 0.91841 0.94183 0.94312 0.92829 0.93822 0.96743 0.96970 0.93134 0.84598 0.82283 0.82135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.55 37.15 0.35 -1.02 16 2 C -0.15 -1.58 5.37 -26.74 -0.14 -1.72 16 3 C 0.14 1.72 2.36 -68.87 -0.16 1.56 16 4 H 0.08 1.06 7.63 -51.93 -0.40 0.66 16 5 N -0.68 -9.46 4.92 -107.95 -0.53 -9.99 16 6 C 0.07 1.20 4.47 -3.82 -0.02 1.18 16 7 C -0.06 -1.11 0.60 -154.51 -0.09 -1.21 16 8 C -0.13 -2.35 7.88 37.16 0.29 -2.06 16 9 C -0.12 -2.26 8.06 37.16 0.30 -1.96 16 10 C 0.03 0.86 4.04 -27.89 -0.11 0.74 16 11 C -0.51 -13.89 7.65 -34.44 -0.26 -14.16 16 12 H 0.06 1.55 5.68 -52.48 -0.30 1.26 16 13 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 14 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 15 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 C -0.08 -0.93 4.12 -106.25 -0.44 -1.36 16 20 C -0.12 -1.30 9.34 -41.21 -0.38 -1.69 16 21 C -0.22 -2.13 11.23 29.04 0.33 -1.80 16 22 S 0.07 0.71 23.34 -107.50 -2.51 -1.80 16 23 C -0.19 -2.12 10.52 29.04 0.31 -1.82 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.53 7.16 -51.93 -0.37 0.16 16 27 H 0.07 0.77 7.58 -51.92 -0.39 0.37 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.34 4.48 6.59 -39.29 -0.26 4.23 16 30 H 0.07 1.16 7.92 -51.93 -0.41 0.75 16 31 H 0.02 0.41 7.61 -51.93 -0.40 0.02 16 32 H 0.03 0.52 6.70 -51.93 -0.35 0.17 16 33 H 0.06 1.28 6.62 -51.93 -0.34 0.94 16 34 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.04 0.77 8.14 -51.92 -0.42 0.35 16 36 H 0.05 1.12 6.62 -51.93 -0.34 0.78 16 37 H 0.04 0.78 7.60 -51.93 -0.39 0.38 16 38 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16 42 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 43 H 0.16 1.73 7.89 -52.49 -0.41 1.32 16 LS Contribution 350.07 15.07 5.28 5.28 Total: -1.00 -29.05 350.07 -9.49 -38.54 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -7.31 Total: 1.38 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: -0.13 Total: -23.86 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: 0.20 Total: -36.18 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 0.71 SS G_CDS: -2.51 Total: -1.80 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.05 -9.49 -38.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453233728.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.749 kcal (2) G-P(sol) polarization free energy of solvation -29.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds