Wall clock time and date at job start Tue Mar 31 2020 05:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47522 * 2 1 4 4 H 1.09005 * 109.46992 * 54.71794 * 3 2 1 5 5 N 1.46894 * 109.47522 * 174.71632 * 3 2 1 6 6 C 1.46901 * 111.00337 * 273.01502 * 5 3 2 7 7 C 1.53000 * 109.47371 * 185.37237 * 6 5 3 8 8 C 1.52995 * 109.47080 * 300.00087 * 7 6 5 9 9 C 1.53002 * 109.47118 * 59.99855 * 7 6 5 10 10 C 1.52995 * 109.47328 * 179.97438 * 7 6 5 11 11 C 1.50697 * 109.47496 * 179.97438 * 10 7 6 12 12 H 1.08004 * 119.99760 * 0.02562 * 11 10 7 13 13 C 1.37873 * 120.00219 * 179.97438 * 11 10 7 14 14 N 1.31516 * 120.00255 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99855 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47368 * 60.00408 * 15 13 11 17 17 H 1.48496 * 109.46903 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47061 * 299.99847 * 15 13 11 19 19 C 1.50703 * 109.47181 * 294.71984 * 3 2 1 20 20 C 1.38427 * 122.53642 * 99.73164 * 19 3 2 21 21 C 1.33391 * 114.91580 * 179.76109 * 20 19 3 22 22 S 1.75884 * 109.59407 * 0.48118 * 21 20 19 23 23 C 1.33388 * 122.53925 * 280.02263 * 19 3 2 24 24 H 1.09006 * 109.47130 * 305.68060 * 1 2 3 25 25 H 1.09004 * 109.47622 * 185.68033 * 1 2 3 26 26 H 1.09005 * 109.47207 * 65.67923 * 1 2 3 27 27 H 1.09008 * 109.46920 * 119.99927 * 2 1 3 28 28 H 1.08997 * 109.47122 * 239.99785 * 2 1 3 29 29 H 1.00906 * 110.99578 * 36.96716 * 5 3 2 30 30 H 1.09001 * 109.47188 * 305.37474 * 6 5 3 31 31 H 1.09001 * 109.47215 * 65.37179 * 6 5 3 32 32 H 1.08997 * 109.47492 * 60.00036 * 8 7 6 33 33 H 1.09005 * 109.47447 * 179.97438 * 8 7 6 34 34 H 1.08996 * 109.47395 * 299.99962 * 8 7 6 35 35 H 1.09009 * 109.47095 * 60.00093 * 9 7 6 36 36 H 1.08993 * 109.47379 * 179.97438 * 9 7 6 37 37 H 1.09003 * 109.47322 * 300.00467 * 9 7 6 38 38 H 1.09001 * 109.47362 * 300.00317 * 10 7 6 39 39 H 1.09001 * 109.47083 * 60.00048 * 10 7 6 40 40 H 0.96998 * 119.99857 * 179.97438 * 14 13 11 41 41 H 1.07998 * 122.54150 * 0.02562 * 20 19 3 42 42 H 1.08000 * 125.20333 * 180.20950 * 21 20 19 43 43 H 1.08000 * 125.20017 * 359.97438 * 23 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6015 1.9829 0.8389 5 7 3.5034 1.4444 0.1275 6 6 3.9090 1.4150 1.5391 7 6 5.4297 1.5529 1.6359 8 6 6.0953 0.3948 0.8899 9 6 5.8624 2.8796 1.0085 10 6 5.8520 1.5230 3.1061 11 6 7.3498 1.6582 3.2015 12 1 7.9414 1.7561 2.3032 13 6 7.9649 1.6579 4.4354 14 7 7.2445 1.5392 5.5293 15 14 9.8216 1.8262 4.5535 16 1 10.2418 3.1133 3.9436 17 1 10.2314 1.7971 5.9805 18 1 10.4676 0.7015 3.8304 19 6 1.6473 2.1141 -1.2906 20 6 0.5562 2.9605 -1.3875 21 6 0.3507 3.4757 -2.6006 22 16 1.5731 2.8730 -3.7123 23 6 2.3215 1.9337 -2.4274 24 1 -0.3634 0.5994 0.8348 25 1 -0.3634 -1.0226 0.1017 26 1 -0.3634 0.4233 -0.9365 27 1 1.8933 -0.5139 0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 3.9118 0.6751 -0.3821 30 1 3.4347 2.2401 2.0707 31 1 3.6007 0.4699 1.9862 32 1 5.7944 0.4166 -0.1575 33 1 7.1787 0.4933 0.9585 34 1 5.7870 -0.5503 1.3369 35 1 5.3882 3.7047 1.5400 36 1 6.9457 2.9780 1.0778 37 1 5.5615 2.9014 -0.0390 38 1 5.3777 2.3483 3.6373 39 1 5.5436 0.5781 3.5536 40 1 7.6773 1.5386 6.3974 41 1 -0.0778 3.1898 -0.5439 42 1 -0.4472 4.1553 -2.8614 43 1 3.1937 1.3070 -2.5412 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453233728.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:19 Heat of formation + Delta-G solvation = -6.726759 kcal Electronic energy + Delta-G solvation = -20200.423746 eV Core-core repulsion = 17370.643624 eV Total energy + Delta-G solvation = -2829.780122 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.20121 -38.63958 -36.14100 -34.48710 -32.68078 -30.37695 -28.95962 -27.87176 -27.37655 -26.07252 -24.64863 -23.84279 -21.79806 -19.88293 -19.26901 -18.42952 -18.28457 -16.87199 -16.50245 -15.94075 -15.75584 -15.36185 -15.12247 -14.77867 -14.35421 -14.04110 -13.89058 -13.67507 -13.55717 -13.29077 -13.26260 -12.91928 -12.75567 -12.67716 -12.61962 -12.42330 -12.22737 -12.15914 -12.03848 -11.91351 -11.83146 -11.43680 -11.34558 -10.84686 -10.72376 -10.48861 -9.56808 -9.28909 -9.09409 -8.12963 -6.19866 0.24696 0.89590 1.20174 1.41237 1.43401 1.50653 1.90380 2.44490 3.20876 3.29647 3.94012 4.03758 4.18034 4.26349 4.28774 4.30944 4.41715 4.49879 4.61195 4.68661 4.78191 4.83172 4.87318 4.94146 4.99246 5.10287 5.11856 5.15931 5.21181 5.24085 5.29765 5.37539 5.53300 5.54592 5.55675 5.60276 5.66153 5.73303 5.89625 5.94400 6.16108 6.39024 6.56130 6.95187 7.47381 8.99174 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.028014 B = 0.003528 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.271012 B = 7935.672640 C = 8426.857847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.142 4.142 3 C 0.146 3.854 4 H 0.076 0.924 5 N -0.674 5.674 6 C 0.085 3.915 7 C -0.053 4.053 8 C -0.120 4.120 9 C -0.105 4.105 10 C 0.040 3.960 11 C -0.515 4.515 12 H 0.065 0.935 13 C -0.003 4.003 14 N -0.938 5.938 15 Si 0.955 3.045 16 H -0.269 1.269 17 H -0.288 1.288 18 H -0.268 1.268 19 C -0.087 4.087 20 C -0.138 4.138 21 C -0.214 4.214 22 S 0.082 5.918 23 C -0.202 4.202 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.344 0.656 30 H 0.054 0.946 31 H 0.021 0.979 32 H 0.067 0.933 33 H 0.044 0.956 34 H 0.037 0.963 35 H 0.027 0.973 36 H 0.036 0.964 37 H 0.066 0.934 38 H -0.017 1.017 39 H -0.015 1.015 40 H 0.260 0.740 41 H 0.146 0.854 42 H 0.182 0.818 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.922 -0.323 -17.808 23.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.182 4.182 3 C 0.033 3.967 4 H 0.094 0.906 5 N -0.305 5.305 6 C -0.044 4.044 7 C -0.053 4.053 8 C -0.178 4.178 9 C -0.162 4.162 10 C 0.003 3.997 11 C -0.553 4.553 12 H 0.083 0.917 13 C -0.200 4.200 14 N -0.579 5.579 15 Si 0.780 3.220 16 H -0.194 1.194 17 H -0.213 1.213 18 H -0.192 1.192 19 C -0.100 4.100 20 C -0.169 4.169 21 C -0.350 4.350 22 S 0.345 5.655 23 C -0.337 4.337 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.164 0.836 30 H 0.073 0.927 31 H 0.039 0.961 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.046 0.954 36 H 0.055 0.945 37 H 0.085 0.915 38 H 0.001 0.999 39 H 0.003 0.997 40 H 0.068 0.932 41 H 0.164 0.836 42 H 0.200 0.800 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -14.538 0.588 -19.245 24.126 hybrid contribution 0.535 -0.998 2.581 2.819 sum -14.004 -0.410 -16.663 21.770 Atomic orbital electron populations 1.21661 0.94357 1.01893 1.02052 1.22170 0.97861 0.96221 1.01920 1.20226 0.87726 0.94636 0.94071 0.90592 1.60533 1.07656 1.51065 1.11246 1.21812 0.95162 0.98779 0.88620 1.20466 0.93149 0.96128 0.95577 1.21661 1.00489 0.96613 0.99008 1.21482 0.99556 0.95401 0.99795 1.18998 0.95142 0.93941 0.91623 1.21598 0.93503 1.47985 0.92217 0.91703 1.25903 1.02752 0.95562 0.95797 1.70100 1.37234 1.52483 0.98108 0.85654 0.80425 0.79073 0.76842 1.19425 1.21335 1.19248 1.18826 0.96219 0.99782 0.95174 1.20212 0.98985 0.99154 0.98528 1.25800 1.04906 1.07695 0.96556 1.84170 1.24127 1.43441 1.13755 1.25437 1.05422 1.07217 0.95673 0.92628 0.92300 0.92315 0.92537 0.91335 0.83594 0.92731 0.96063 0.91439 0.93691 0.94394 0.95419 0.94475 0.91503 0.99902 0.99705 0.93178 0.83607 0.80037 0.81834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.55 71.98 0.69 -1.76 16 2 C -0.14 -2.86 5.37 30.59 0.16 -2.69 16 3 C 0.15 3.33 2.36 44.17 0.10 3.44 16 4 H 0.08 1.87 7.63 -2.38 -0.02 1.85 16 5 N -0.67 -17.91 4.92 -495.45 -2.44 -20.35 16 6 C 0.09 2.87 4.47 86.30 0.39 3.25 16 7 C -0.05 -2.09 0.60 -52.18 -0.03 -2.12 16 8 C -0.12 -4.31 7.88 71.98 0.57 -3.74 16 9 C -0.11 -4.06 8.06 71.98 0.58 -3.48 16 10 C 0.04 2.11 4.04 29.85 0.12 2.23 16 11 C -0.51 -28.66 7.65 25.60 0.20 -28.47 16 12 H 0.06 3.46 5.68 -2.91 -0.02 3.45 16 13 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 14 N -0.94 -57.62 13.29 21.45 0.28 -57.34 16 15 Si 0.95 44.66 29.54 68.60 2.03 46.69 16 16 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 17 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 18 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 19 C -0.09 -1.87 4.12 -20.92 -0.09 -1.96 16 20 C -0.14 -2.65 9.34 21.22 0.20 -2.46 16 21 C -0.21 -3.67 11.23 66.72 0.75 -2.92 16 22 S 0.08 1.48 23.34 -56.49 -1.32 0.16 16 23 C -0.20 -4.19 10.52 66.72 0.70 -3.49 16 24 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 25 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 26 H 0.06 1.00 7.16 -2.38 -0.02 0.98 16 27 H 0.06 1.25 7.58 -2.38 -0.02 1.23 16 28 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.34 8.41 6.59 -89.69 -0.59 7.82 16 30 H 0.05 1.95 7.92 -2.39 -0.02 1.93 16 31 H 0.02 0.72 7.61 -2.39 -0.02 0.70 16 32 H 0.07 1.94 6.70 -2.39 -0.02 1.93 16 33 H 0.04 1.76 6.62 -2.38 -0.02 1.75 16 34 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 36 H 0.04 1.53 6.62 -2.39 -0.02 1.51 16 37 H 0.07 2.26 7.60 -2.39 -0.02 2.24 16 38 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 39 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 40 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 41 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 42 H 0.18 2.17 8.06 -2.91 -0.02 2.15 16 43 H 0.16 3.20 7.89 -2.91 -0.02 3.17 16 Total: -1.00 -62.73 350.07 3.73 -58.99 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.38 Total: 15.74 kcal Atomic # 6 Polarization: -48.69 SS G_CDS: 4.80 Total: -43.89 kcal Atomic # 7 Polarization: -75.54 SS G_CDS: -2.15 Total: -77.69 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -1.32 Total: 0.16 kcal Total: -62.73 3.73 -58.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453233728.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.268 kcal (2) G-P(sol) polarization free energy of solvation -62.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds