Wall clock time and date at job start Tue Mar 31 2020 05:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42905 * 113.99826 * 2 1 4 4 C 1.53000 * 109.46810 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47046 * 65.00268 * 4 3 2 6 6 C 1.36940 * 120.00084 * 269.99909 * 5 4 3 7 7 H 1.07998 * 119.99508 * 322.84780 * 6 5 4 8 8 C 1.38810 * 119.99951 * 142.85002 * 6 5 4 9 9 N 1.31615 * 120.00088 * 339.31872 * 8 6 5 10 10 Si 1.86797 * 119.99873 * 159.32682 * 8 6 5 11 11 H 1.48503 * 109.47385 * 89.99563 * 10 8 6 12 12 H 1.48503 * 109.47163 * 209.99867 * 10 8 6 13 13 H 1.48505 * 109.47212 * 329.99745 * 10 8 6 14 14 C 1.46503 * 120.00066 * 89.99661 * 5 4 3 15 15 C 1.52998 * 109.47046 * 84.23761 * 14 5 4 16 16 H 1.08997 * 109.47435 * 302.79121 * 15 14 5 17 17 C 1.53005 * 109.47022 * 62.78969 * 15 14 5 18 18 C 1.50701 * 109.47318 * 182.78560 * 15 14 5 19 19 C 1.38242 * 119.96875 * 120.00058 * 18 15 14 20 20 C 1.38203 * 120.01955 * 180.02562 * 19 18 15 21 21 C 1.38455 * 119.97615 * 0.02562 * 20 19 18 22 22 F 1.35105 * 120.02402 * 179.97438 * 21 20 19 23 23 C 1.38460 * 119.94769 * 0.24987 * 21 20 19 24 24 C 1.38198 * 119.97463 * 359.47349 * 23 21 20 25 25 H 1.09000 * 109.46720 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47270 * 300.00167 * 1 2 3 27 27 H 1.09004 * 109.46865 * 59.99905 * 1 2 3 28 28 H 1.08995 * 109.46653 * 59.99999 * 3 2 1 29 29 H 1.08997 * 109.46913 * 299.99814 * 3 2 1 30 30 H 1.08997 * 109.47412 * 305.00539 * 4 3 2 31 31 H 1.09002 * 109.46826 * 185.00060 * 4 3 2 32 32 H 0.97004 * 119.99750 * 180.02562 * 9 8 6 33 33 H 1.08999 * 109.46836 * 324.24012 * 14 5 4 34 34 H 1.08997 * 109.47200 * 204.23801 * 14 5 4 35 35 H 1.09006 * 109.46938 * 300.04805 * 17 15 14 36 36 H 1.09004 * 109.47078 * 60.04297 * 17 15 14 37 37 H 1.09001 * 109.47335 * 180.02562 * 17 15 14 38 38 H 1.07995 * 119.99610 * 0.02562 * 19 18 15 39 39 H 1.07998 * 120.01133 * 180.02562 * 20 19 18 40 40 H 1.08005 * 120.01227 * 179.74391 * 23 21 20 41 41 H 1.07999 * 119.98337 * 180.29446 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.0978 -0.7975 -1.3346 7 1 4.4615 -1.3602 -0.4876 8 6 3.7532 -1.4541 -2.5080 9 7 2.9508 -0.8743 -3.3753 10 14 4.4280 -3.1608 -2.8559 11 1 3.5008 -4.1816 -2.3050 12 1 4.5594 -3.3516 -4.3227 13 1 5.7605 -3.3061 -2.2165 14 6 4.2883 1.3999 -2.4131 15 6 5.7288 1.9042 -2.3070 16 1 5.8549 2.4499 -1.3719 17 6 6.6894 0.7136 -2.3361 18 6 6.0275 2.8190 -3.4667 19 6 6.3951 4.1312 -3.2343 20 6 6.6688 4.9712 -4.2971 21 6 6.5742 4.4982 -5.5949 22 9 6.8410 5.3186 -6.6346 23 6 6.2004 3.1853 -5.8265 24 6 5.9327 2.3455 -4.7621 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.6886 1.8463 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.8508 0.5685 0.8426 31 1 3.9785 2.1766 0.0902 32 1 2.7097 -1.3334 -4.1951 33 1 3.6069 2.2501 -2.4422 34 1 4.1752 0.8123 -3.3241 35 1 6.4728 0.0515 -1.4977 36 1 6.5640 0.1683 -3.2715 37 1 7.7157 1.0728 -2.2600 38 1 6.4685 4.5002 -2.2220 39 1 6.9563 5.9962 -4.1154 40 1 6.1222 2.8163 -6.8386 41 1 5.6458 1.3201 -4.9424 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453603555.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:25 Heat of formation + Delta-G solvation = -51.224960 kcal Electronic energy + Delta-G solvation = -22547.722562 eV Core-core repulsion = 19149.799677 eV Total energy + Delta-G solvation = -3397.922885 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.68337 -39.09146 -37.18016 -35.84125 -33.12058 -31.43815 -30.87434 -28.91208 -27.84393 -25.87454 -25.53146 -23.26599 -22.95595 -22.32320 -20.58511 -19.12323 -17.44201 -16.76818 -15.96567 -15.56628 -15.38389 -15.30872 -15.05407 -14.59876 -14.03164 -13.99866 -13.76724 -13.31878 -13.15124 -13.05819 -12.76521 -12.39155 -11.97973 -11.80416 -11.47318 -11.21962 -11.08074 -10.89478 -10.74865 -10.70793 -10.42313 -10.36793 -10.13556 -9.91883 -9.79699 -9.55083 -8.84554 -8.73916 -8.37548 -8.18139 -6.48246 -5.69784 -3.21618 1.44682 1.49999 3.40488 3.48404 3.50675 3.89082 4.49693 4.55183 4.73051 4.95741 5.07805 5.18283 5.45450 5.53987 5.62325 5.64659 5.81364 5.88281 5.95974 6.12807 6.13956 6.19522 6.20671 6.24521 6.27042 6.34859 6.35851 6.45891 6.51101 6.56646 6.71651 6.86701 6.90156 6.93848 7.07482 7.21878 7.30128 7.71172 7.92156 8.13392 8.60742 9.28175 9.88982 10.47019 11.33705 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016389 B = 0.005309 C = 0.004552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.085013 B = 5272.926841 C = 6149.479397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.352 6.352 3 C 0.048 3.952 4 C 0.144 3.856 5 N -0.573 5.573 6 C -0.234 4.234 7 H 0.058 0.942 8 C 0.017 3.983 9 N -0.886 5.886 10 Si 0.885 3.115 11 H -0.288 1.288 12 H -0.292 1.292 13 H -0.278 1.278 14 C 0.160 3.840 15 C -0.076 4.076 16 H 0.060 0.940 17 C -0.124 4.124 18 C -0.062 4.062 19 C -0.098 4.098 20 C -0.156 4.156 21 C 0.074 3.926 22 F -0.150 7.150 23 C -0.151 4.151 24 C -0.081 4.081 25 H 0.073 0.927 26 H 0.021 0.979 27 H 0.031 0.969 28 H 0.018 0.982 29 H 0.036 0.964 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.250 0.750 33 H 0.018 0.982 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.048 0.952 37 H 0.027 0.973 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.129 0.871 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.648 8.677 0.785 9.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.269 6.269 3 C -0.032 4.032 4 C 0.017 3.983 5 N -0.292 5.292 6 C -0.364 4.364 7 H 0.076 0.924 8 C -0.183 4.183 9 N -0.529 5.529 10 Si 0.715 3.285 11 H -0.215 1.215 12 H -0.218 1.218 13 H -0.204 1.204 14 C 0.033 3.967 15 C -0.097 4.097 16 H 0.079 0.921 17 C -0.182 4.182 18 C -0.063 4.063 19 C -0.117 4.117 20 C -0.174 4.174 21 C 0.055 3.945 22 F -0.128 7.128 23 C -0.170 4.170 24 C -0.099 4.099 25 H 0.092 0.908 26 H 0.040 0.960 27 H 0.049 0.951 28 H 0.036 0.964 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.036 0.964 34 H 0.118 0.882 35 H 0.097 0.903 36 H 0.067 0.933 37 H 0.046 0.954 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.147 0.853 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.700 8.454 0.598 9.248 hybrid contribution -0.118 -0.389 -0.560 0.692 sum 3.582 8.065 0.038 8.825 Atomic orbital electron populations 1.22559 0.83916 1.01428 0.98165 1.88154 1.16875 1.27099 1.94777 1.23299 0.98155 0.84703 0.97045 1.21048 0.89487 0.96245 0.91552 1.43754 1.74705 1.02893 1.07886 1.18834 1.36305 0.82089 0.99178 0.92397 1.25034 0.96847 0.96697 0.99683 1.70011 1.33541 1.38079 1.11304 0.86585 0.79270 0.85594 0.77060 1.21480 1.21769 1.20390 1.20946 0.88107 0.93149 0.94527 1.20977 1.00900 0.94553 0.93292 0.92137 1.21653 0.95596 0.97498 1.03408 1.20307 0.96064 0.94267 0.95663 1.20948 0.99121 0.93177 0.98419 1.21023 1.04443 1.00788 0.91181 1.17671 1.03996 0.88908 0.83952 1.91449 1.91935 1.72183 1.57281 1.21132 1.02935 0.92362 1.00592 1.21047 0.97267 1.00268 0.91354 0.90797 0.96005 0.95055 0.96378 0.94588 0.93070 0.93359 0.93991 0.96354 0.88188 0.90274 0.93324 0.95378 0.85517 0.85496 0.85287 0.84571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.65 11.01 101.05 1.11 1.77 16 2 O -0.35 -7.85 10.18 -35.23 -0.36 -8.20 16 3 C 0.05 0.94 6.28 37.16 0.23 1.18 16 4 C 0.14 2.88 6.12 -4.04 -0.02 2.85 16 5 N -0.57 -13.14 2.14 -173.24 -0.37 -13.51 16 6 C -0.23 -6.00 7.32 -15.06 -0.11 -6.11 16 7 H 0.06 1.53 7.91 -52.49 -0.42 1.12 16 8 C 0.02 0.45 4.92 -17.43 -0.09 0.36 16 9 N -0.89 -24.39 11.48 55.49 0.64 -23.75 16 10 Si 0.89 21.07 29.60 -169.99 -5.03 16.04 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 14 C 0.16 3.43 4.47 -4.04 -0.02 3.41 16 15 C -0.08 -1.36 2.78 -91.77 -0.26 -1.62 16 16 H 0.06 1.03 7.85 -51.93 -0.41 0.62 16 17 C -0.12 -2.29 8.57 37.16 0.32 -1.97 16 18 C -0.06 -1.01 4.78 -104.62 -0.50 -1.51 16 19 C -0.10 -1.40 9.67 -39.59 -0.38 -1.78 16 20 C -0.16 -2.12 10.03 -39.51 -0.40 -2.51 16 21 C 0.07 1.09 7.30 -39.42 -0.29 0.80 16 22 F -0.15 -2.20 17.27 2.25 0.04 -2.16 16 23 C -0.15 -2.26 10.03 -39.51 -0.40 -2.65 16 24 C -0.08 -1.32 8.74 -39.60 -0.35 -1.67 16 25 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.05 1.03 8.04 -51.93 -0.42 0.61 16 31 H 0.05 0.84 8.05 -51.93 -0.42 0.42 16 32 H 0.25 6.76 8.31 -40.82 -0.34 6.42 16 33 H 0.02 0.40 8.11 -51.93 -0.42 -0.03 16 34 H 0.10 2.44 4.88 -51.93 -0.25 2.19 16 35 H 0.08 1.61 6.62 -51.93 -0.34 1.26 16 36 H 0.05 0.93 7.39 -51.93 -0.38 0.55 16 37 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.13 1.54 7.94 -52.49 -0.42 1.12 16 39 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 40 H 0.13 1.69 8.06 -52.48 -0.42 1.27 16 41 H 0.14 2.33 7.13 -52.49 -0.37 1.96 16 LS Contribution 341.21 15.07 5.14 5.14 Total: -1.00 -28.14 341.21 -7.45 -35.59 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -6.37 Total: 0.30 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: -1.14 Total: -9.44 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.27 Total: -37.26 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: -0.36 Total: -8.20 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.04 Total: -2.16 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -28.14 -7.45 -35.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453603555.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.635 kcal (2) G-P(sol) polarization free energy of solvation -28.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds