Wall clock time and date at job start Tue Mar 31 2020 05:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42905 * 113.99826 * 2 1 4 4 C 1.53000 * 109.46810 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47046 * 65.00268 * 4 3 2 6 6 C 1.36940 * 120.00084 * 269.99909 * 5 4 3 7 7 H 1.07998 * 119.99508 * 322.84780 * 6 5 4 8 8 C 1.38810 * 119.99951 * 142.85002 * 6 5 4 9 9 N 1.31615 * 120.00088 * 339.31872 * 8 6 5 10 10 Si 1.86797 * 119.99873 * 159.32682 * 8 6 5 11 11 H 1.48503 * 109.47385 * 89.99563 * 10 8 6 12 12 H 1.48503 * 109.47163 * 209.99867 * 10 8 6 13 13 H 1.48505 * 109.47212 * 329.99745 * 10 8 6 14 14 C 1.46503 * 120.00066 * 89.99661 * 5 4 3 15 15 C 1.52998 * 109.47046 * 84.23761 * 14 5 4 16 16 H 1.08997 * 109.47435 * 302.79121 * 15 14 5 17 17 C 1.53005 * 109.47022 * 62.78969 * 15 14 5 18 18 C 1.50701 * 109.47318 * 182.78560 * 15 14 5 19 19 C 1.38242 * 119.96875 * 120.00058 * 18 15 14 20 20 C 1.38203 * 120.01955 * 180.02562 * 19 18 15 21 21 C 1.38455 * 119.97615 * 0.02562 * 20 19 18 22 22 F 1.35105 * 120.02402 * 179.97438 * 21 20 19 23 23 C 1.38460 * 119.94769 * 0.24987 * 21 20 19 24 24 C 1.38198 * 119.97463 * 359.47349 * 23 21 20 25 25 H 1.09000 * 109.46720 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47270 * 300.00167 * 1 2 3 27 27 H 1.09004 * 109.46865 * 59.99905 * 1 2 3 28 28 H 1.08995 * 109.46653 * 59.99999 * 3 2 1 29 29 H 1.08997 * 109.46913 * 299.99814 * 3 2 1 30 30 H 1.08997 * 109.47412 * 305.00539 * 4 3 2 31 31 H 1.09002 * 109.46826 * 185.00060 * 4 3 2 32 32 H 0.97004 * 119.99750 * 180.02562 * 9 8 6 33 33 H 1.08999 * 109.46836 * 324.24012 * 14 5 4 34 34 H 1.08997 * 109.47200 * 204.23801 * 14 5 4 35 35 H 1.09006 * 109.46938 * 300.04805 * 17 15 14 36 36 H 1.09004 * 109.47078 * 60.04297 * 17 15 14 37 37 H 1.09001 * 109.47335 * 180.02562 * 17 15 14 38 38 H 1.07995 * 119.99610 * 0.02562 * 19 18 15 39 39 H 1.07998 * 120.01133 * 180.02562 * 20 19 18 40 40 H 1.08005 * 120.01227 * 179.74391 * 23 21 20 41 41 H 1.07999 * 119.98337 * 180.29446 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.0978 -0.7975 -1.3346 7 1 4.4615 -1.3602 -0.4876 8 6 3.7532 -1.4541 -2.5080 9 7 2.9508 -0.8743 -3.3753 10 14 4.4280 -3.1608 -2.8559 11 1 3.5008 -4.1816 -2.3050 12 1 4.5594 -3.3516 -4.3227 13 1 5.7605 -3.3061 -2.2165 14 6 4.2883 1.3999 -2.4131 15 6 5.7288 1.9042 -2.3070 16 1 5.8549 2.4499 -1.3719 17 6 6.6894 0.7136 -2.3361 18 6 6.0275 2.8190 -3.4667 19 6 6.3951 4.1312 -3.2343 20 6 6.6688 4.9712 -4.2971 21 6 6.5742 4.4982 -5.5949 22 9 6.8410 5.3186 -6.6346 23 6 6.2004 3.1853 -5.8265 24 6 5.9327 2.3455 -4.7621 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.6886 1.8463 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.8508 0.5685 0.8426 31 1 3.9785 2.1766 0.0902 32 1 2.7097 -1.3334 -4.1951 33 1 3.6069 2.2501 -2.4422 34 1 4.1752 0.8123 -3.3241 35 1 6.4728 0.0515 -1.4977 36 1 6.5640 0.1683 -3.2715 37 1 7.7157 1.0728 -2.2600 38 1 6.4685 4.5002 -2.2220 39 1 6.9563 5.9962 -4.1154 40 1 6.1222 2.8163 -6.8386 41 1 5.6458 1.3201 -4.9424 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453603555.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:24 Heat of formation + Delta-G solvation = -64.938032 kcal Electronic energy + Delta-G solvation = -22548.317205 eV Core-core repulsion = 19149.799677 eV Total energy + Delta-G solvation = -3398.517528 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.83411 -40.33991 -38.77487 -37.45545 -34.65224 -33.30463 -32.02185 -30.35396 -29.35261 -27.64692 -27.02481 -24.95110 -24.24509 -23.60239 -22.13661 -20.63853 -18.64485 -18.52487 -17.26913 -17.09446 -16.80396 -16.70088 -16.52902 -16.21370 -15.62920 -15.46477 -15.23829 -14.71580 -14.66205 -14.34064 -14.16394 -13.73131 -13.50592 -13.18230 -13.09622 -12.90941 -12.69114 -12.61393 -12.39625 -12.13159 -12.00140 -11.97381 -11.71026 -11.57927 -11.50249 -11.20389 -10.36972 -10.26630 -9.98275 -9.42992 -8.36818 -7.67243 -5.21060 0.25623 0.35919 1.47153 1.51738 1.57763 2.60652 2.71304 3.22610 3.35027 3.45898 3.68824 3.85133 4.01592 4.16284 4.29989 4.44607 4.45107 4.52206 4.57493 4.64276 4.65812 4.69776 4.75809 4.82643 4.85718 4.97366 5.04712 5.16925 5.22066 5.23933 5.28301 5.30025 5.37498 5.41860 5.67459 5.79436 5.86442 5.99351 6.03374 6.58105 6.68011 7.35623 8.01894 8.54150 9.31851 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016389 B = 0.005309 C = 0.004552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.085013 B = 5272.926841 C = 6149.479397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.393 6.393 3 C 0.050 3.950 4 C 0.139 3.861 5 N -0.586 5.586 6 C -0.222 4.222 7 H 0.047 0.953 8 C -0.025 4.025 9 N -0.913 5.913 10 Si 0.930 3.070 11 H -0.295 1.295 12 H -0.296 1.296 13 H -0.271 1.271 14 C 0.166 3.834 15 C -0.062 4.062 16 H 0.077 0.923 17 C -0.117 4.117 18 C -0.077 4.077 19 C -0.091 4.091 20 C -0.147 4.147 21 C 0.068 3.932 22 F -0.149 7.149 23 C -0.156 4.156 24 C -0.095 4.095 25 H 0.078 0.922 26 H 0.054 0.946 27 H 0.024 0.976 28 H 0.054 0.946 29 H 0.018 0.982 30 H 0.048 0.952 31 H 0.079 0.921 32 H 0.243 0.757 33 H 0.010 0.990 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.029 0.971 37 H 0.051 0.949 38 H 0.155 0.845 39 H 0.158 0.842 40 H 0.140 0.860 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.541 10.685 1.906 11.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.312 6.312 3 C -0.029 4.029 4 C 0.013 3.987 5 N -0.306 5.306 6 C -0.353 4.353 7 H 0.065 0.935 8 C -0.222 4.222 9 N -0.558 5.558 10 Si 0.760 3.240 11 H -0.222 1.222 12 H -0.223 1.223 13 H -0.196 1.196 14 C 0.040 3.960 15 C -0.082 4.082 16 H 0.096 0.904 17 C -0.174 4.174 18 C -0.078 4.078 19 C -0.108 4.108 20 C -0.165 4.165 21 C 0.049 3.951 22 F -0.128 7.128 23 C -0.175 4.175 24 C -0.114 4.114 25 H 0.097 0.903 26 H 0.072 0.928 27 H 0.043 0.957 28 H 0.072 0.928 29 H 0.036 0.964 30 H 0.067 0.933 31 H 0.097 0.903 32 H 0.052 0.948 33 H 0.029 0.971 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.048 0.952 37 H 0.070 0.930 38 H 0.172 0.828 39 H 0.176 0.824 40 H 0.158 0.842 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.605 10.477 1.733 11.575 hybrid contribution -0.404 -0.937 -0.877 1.346 sum 4.200 9.540 0.856 10.459 Atomic orbital electron populations 1.22689 0.81919 1.02239 0.99350 1.88082 1.19305 1.28699 1.95064 1.23264 0.97733 0.84056 0.97799 1.21210 0.90045 0.97546 0.89905 1.43902 1.75354 1.02279 1.09041 1.18854 1.34549 0.83474 0.98435 0.93534 1.25463 0.97692 0.98960 1.00054 1.70129 1.35236 1.38977 1.11479 0.85875 0.78873 0.82872 0.76429 1.22221 1.22282 1.19616 1.20774 0.90350 0.92035 0.92833 1.20693 0.97962 0.94692 0.94891 0.90435 1.21546 0.97203 0.97314 1.01369 1.20200 0.97702 0.95171 0.94709 1.21186 0.97725 0.91925 1.00011 1.21340 1.02902 1.02072 0.90226 1.17835 1.03879 0.88731 0.84618 1.91454 1.91904 1.72035 1.57412 1.21224 1.02792 0.92642 1.00820 1.20939 0.98450 0.99739 0.92235 0.90324 0.92775 0.95723 0.92769 0.96377 0.93321 0.90268 0.94805 0.97150 0.91348 0.92463 0.95179 0.92979 0.82772 0.82450 0.84209 0.86626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.20 11.01 113.37 1.25 2.45 16 2 O -0.39 -17.33 10.18 -148.98 -1.52 -18.85 16 3 C 0.05 1.93 6.28 71.98 0.45 2.38 16 4 C 0.14 5.38 6.12 86.38 0.53 5.91 16 5 N -0.59 -26.86 2.14 -702.00 -1.50 -28.36 16 6 C -0.22 -11.54 7.32 84.03 0.62 -10.92 16 7 H 0.05 2.50 7.91 -2.91 -0.02 2.48 16 8 C -0.03 -1.35 4.92 84.86 0.42 -0.93 16 9 N -0.91 -51.95 11.48 21.65 0.25 -51.70 16 10 Si 0.93 44.35 29.60 68.60 2.03 46.38 16 11 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 12 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 13 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 14 C 0.17 7.20 4.47 86.38 0.39 7.59 16 15 C -0.06 -2.14 2.78 -11.54 -0.03 -2.17 16 16 H 0.08 2.42 7.85 -2.39 -0.02 2.40 16 17 C -0.12 -4.25 8.57 71.98 0.62 -3.64 16 18 C -0.08 -2.39 4.78 -19.86 -0.09 -2.48 16 19 C -0.09 -2.27 9.67 22.26 0.22 -2.05 16 20 C -0.15 -3.48 10.03 22.31 0.22 -3.25 16 21 C 0.07 1.86 7.30 22.37 0.16 2.03 16 22 F -0.15 -4.06 17.27 44.97 0.78 -3.28 16 23 C -0.16 -4.53 10.03 22.31 0.22 -4.30 16 24 C -0.10 -3.11 8.74 22.26 0.19 -2.91 16 25 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 26 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 28 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.02 0.74 8.14 -2.39 -0.02 0.73 16 30 H 0.05 1.90 8.04 -2.39 -0.02 1.88 16 31 H 0.08 2.54 8.05 -2.39 -0.02 2.52 16 32 H 0.24 13.65 8.31 -92.71 -0.77 12.88 16 33 H 0.01 0.45 8.11 -2.39 -0.02 0.43 16 34 H 0.07 3.46 4.88 -2.39 -0.01 3.45 16 35 H 0.06 2.31 6.62 -2.38 -0.02 2.30 16 36 H 0.03 1.17 7.39 -2.39 -0.02 1.15 16 37 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.15 3.01 7.94 -2.91 -0.02 2.98 16 39 H 0.16 2.78 8.06 -2.91 -0.02 2.75 16 40 H 0.14 3.61 8.06 -2.91 -0.02 3.59 16 41 H 0.12 4.19 7.13 -2.91 -0.02 4.17 16 Total: -1.00 -61.32 341.21 6.20 -55.12 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 1.00 Total: 13.00 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: 5.16 Total: -12.31 kcal Atomic # 7 Polarization: -78.81 SS G_CDS: -1.25 Total: -80.06 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -1.52 Total: -18.85 kcal Atomic # 9 Polarization: -4.06 SS G_CDS: 0.78 Total: -3.28 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -61.32 6.20 -55.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453603555.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.814 kcal (2) G-P(sol) polarization free energy of solvation -61.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds