Wall clock time and date at job start Tue Mar 31 2020 05:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42911 * 114.00159 * 2 1 4 4 C 1.52995 * 109.47347 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.46970 * 64.99677 * 4 3 2 6 6 C 1.36938 * 120.00434 * 269.99785 * 5 4 3 7 7 H 1.07996 * 119.99586 * 142.65205 * 6 5 4 8 8 C 1.38809 * 120.00001 * 322.65581 * 6 5 4 9 9 N 1.31622 * 119.99946 * 336.66506 * 8 6 5 10 10 Si 1.86802 * 120.00276 * 156.66016 * 8 6 5 11 11 H 1.48500 * 109.46713 * 59.99666 * 10 8 6 12 12 H 1.48490 * 109.47430 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.46838 * 300.00454 * 10 8 6 14 14 C 1.46500 * 119.99690 * 90.00620 * 5 4 3 15 15 C 1.52997 * 109.47473 * 91.97726 * 14 5 4 16 16 H 1.08997 * 109.46885 * 57.41254 * 15 14 5 17 17 C 1.52998 * 109.47187 * 297.41321 * 15 14 5 18 18 C 1.50702 * 109.47156 * 177.41188 * 15 14 5 19 19 C 1.38246 * 119.97301 * 59.72284 * 18 15 14 20 20 C 1.38197 * 120.02815 * 179.76661 * 19 18 15 21 21 C 1.38470 * 119.96947 * 0.50981 * 20 19 18 22 22 F 1.35098 * 120.02392 * 179.76471 * 21 20 19 23 23 C 1.38458 * 119.94983 * 359.74892 * 21 20 19 24 24 C 1.38206 * 119.97421 * 359.97438 * 23 21 20 25 25 H 1.09001 * 109.46985 * 300.00112 * 1 2 3 26 26 H 1.08999 * 109.47065 * 59.99967 * 1 2 3 27 27 H 1.08998 * 109.47381 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46497 * 60.00119 * 3 2 1 29 29 H 1.08993 * 109.46937 * 300.00372 * 3 2 1 30 30 H 1.09000 * 109.47256 * 305.00008 * 4 3 2 31 31 H 1.08993 * 109.47648 * 185.00008 * 4 3 2 32 32 H 0.97006 * 120.00151 * 180.02562 * 9 8 6 33 33 H 1.08997 * 109.47123 * 331.97519 * 14 5 4 34 34 H 1.08999 * 109.47051 * 211.98263 * 14 5 4 35 35 H 1.09004 * 109.47033 * 185.96295 * 17 15 14 36 36 H 1.08999 * 109.47002 * 305.95994 * 17 15 14 37 37 H 1.09000 * 109.47132 * 65.96313 * 17 15 14 38 38 H 1.08000 * 119.98899 * 0.02562 * 19 18 15 39 39 H 1.07993 * 120.01839 * 180.25574 * 20 19 18 40 40 H 1.07997 * 120.01243 * 179.97438 * 23 21 20 41 41 H 1.07990 * 119.98853 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 4.0968 -0.7970 -1.3369 7 1 3.8248 -1.3079 -2.2487 8 6 4.5690 -1.5202 -0.2503 9 7 5.3140 -0.9295 0.6599 10 14 4.1471 -3.3320 -0.0797 11 1 4.6653 -4.0739 -1.2571 12 1 4.7683 -3.8706 1.1568 13 1 2.6727 -3.4918 -0.0037 14 6 4.2864 1.4007 -2.4148 15 6 5.7769 1.7461 -2.4107 16 1 6.3627 0.8269 -2.4103 17 6 6.1078 2.5624 -1.1597 18 6 6.1089 2.5529 -3.6395 19 6 5.4808 3.7644 -3.8608 20 6 5.7879 4.5075 -4.9847 21 6 6.7175 4.0332 -5.8948 22 9 7.0152 4.7565 -6.9963 23 6 7.3421 2.8172 -5.6748 24 6 7.0374 2.0785 -4.5472 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 3.8515 0.5683 0.8409 31 1 3.9786 2.1765 0.0889 32 1 5.6443 -1.4350 1.4190 33 1 3.7006 2.3187 -2.3688 34 1 4.0414 0.8588 -3.3283 35 1 7.1437 2.8983 -1.2086 36 1 5.4474 3.4278 -1.1054 37 1 5.9682 1.9426 -0.2740 38 1 4.7528 4.1323 -3.1529 39 1 5.3002 5.4558 -5.1553 40 1 8.0670 2.4461 -6.3842 41 1 7.5247 1.1303 -4.3751 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453603563.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:27 Heat of formation + Delta-G solvation = -51.754165 kcal Electronic energy + Delta-G solvation = -22375.949322 eV Core-core repulsion = 18978.003489 eV Total energy + Delta-G solvation = -3397.945833 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.74946 -39.16796 -37.25548 -35.86956 -33.34951 -31.04102 -30.94406 -29.02252 -28.27539 -25.78645 -25.47381 -23.59102 -22.93235 -22.22935 -20.47567 -19.38116 -17.51383 -16.60782 -16.17173 -15.64988 -15.45197 -15.40402 -14.95549 -14.60499 -14.16130 -14.05668 -13.67571 -13.42575 -13.27559 -13.07716 -12.89004 -12.50890 -11.96492 -11.84611 -11.55668 -11.34852 -10.97549 -10.85802 -10.82846 -10.75536 -10.57456 -10.27059 -10.16506 -9.77736 -9.76298 -9.69643 -8.92827 -8.82033 -8.38081 -8.24280 -6.50410 -5.70463 -3.22525 1.37516 1.41831 3.46722 3.51786 3.58882 3.81430 4.42836 4.59008 4.70133 4.89794 5.00713 5.13103 5.43578 5.50174 5.52444 5.63672 5.75435 5.80902 5.82107 6.01629 6.07019 6.08759 6.12360 6.14972 6.27663 6.31025 6.37768 6.41891 6.46168 6.56573 6.61773 6.69332 6.83347 6.90632 7.08951 7.20180 7.22778 7.63985 7.92430 8.08616 8.61709 9.26410 9.90733 10.46481 11.31314 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.019830 B = 0.004573 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.679418 B = 6121.553139 C = 6827.624566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.354 6.354 3 C 0.045 3.955 4 C 0.142 3.858 5 N -0.571 5.571 6 C -0.242 4.242 7 H 0.055 0.945 8 C 0.022 3.978 9 N -0.889 5.889 10 Si 0.893 3.107 11 H -0.286 1.286 12 H -0.294 1.294 13 H -0.281 1.281 14 C 0.159 3.841 15 C -0.075 4.075 16 H 0.084 0.916 17 C -0.132 4.132 18 C -0.063 4.063 19 C -0.091 4.091 20 C -0.153 4.153 21 C 0.073 3.927 22 F -0.149 7.149 23 C -0.152 4.152 24 C -0.093 4.093 25 H 0.026 0.974 26 H 0.028 0.972 27 H 0.074 0.926 28 H 0.024 0.976 29 H 0.026 0.974 30 H 0.099 0.901 31 H 0.045 0.955 32 H 0.252 0.748 33 H 0.033 0.967 34 H 0.042 0.958 35 H 0.035 0.965 36 H 0.038 0.962 37 H 0.084 0.916 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.007 9.067 -5.980 10.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.272 6.272 3 C -0.034 4.034 4 C 0.015 3.985 5 N -0.290 5.290 6 C -0.372 4.372 7 H 0.072 0.928 8 C -0.178 4.178 9 N -0.532 5.532 10 Si 0.723 3.277 11 H -0.212 1.212 12 H -0.220 1.220 13 H -0.208 1.208 14 C 0.032 3.968 15 C -0.096 4.096 16 H 0.103 0.897 17 C -0.189 4.189 18 C -0.064 4.064 19 C -0.109 4.109 20 C -0.172 4.172 21 C 0.054 3.946 22 F -0.128 7.128 23 C -0.171 4.171 24 C -0.111 4.111 25 H 0.044 0.956 26 H 0.047 0.953 27 H 0.092 0.908 28 H 0.042 0.958 29 H 0.045 0.955 30 H 0.117 0.883 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.103 0.897 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.808 8.843 -5.861 10.640 hybrid contribution -0.422 -0.513 -0.117 0.674 sum -1.230 8.330 -5.977 10.326 Atomic orbital electron populations 1.22628 0.84339 1.01446 0.98348 1.88230 1.16480 1.27660 1.94800 1.23451 0.99070 0.84143 0.96739 1.21087 0.87369 0.96897 0.93158 1.43684 1.74622 1.02622 1.08064 1.18783 1.36705 0.81495 1.00199 0.92751 1.24967 0.96214 0.97420 0.99158 1.69979 1.33163 1.36271 1.13809 0.86532 0.78674 0.85745 0.76703 1.21215 1.22034 1.20758 1.20987 0.90405 0.93582 0.91862 1.20961 1.01604 0.97241 0.89799 0.89731 1.21772 0.98870 0.98985 0.99243 1.20430 0.94431 0.94553 0.96988 1.20908 0.99397 0.94242 0.96401 1.21078 0.99290 1.01426 0.95395 1.17667 0.99704 0.91907 0.85316 1.91451 1.92527 1.77326 1.51510 1.21095 1.01983 0.94307 0.99721 1.21057 0.97346 0.99703 0.92987 0.95589 0.95326 0.90778 0.95838 0.95536 0.88305 0.93680 0.93780 0.94841 0.94001 0.94578 0.94331 0.89736 0.85251 0.85396 0.85353 0.85079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.35 -7.74 10.18 -35.23 -0.36 -8.10 16 3 C 0.05 0.89 6.28 37.16 0.23 1.12 16 4 C 0.14 3.10 4.79 -4.04 -0.02 3.08 16 5 N -0.57 -13.17 2.16 -173.25 -0.37 -13.54 16 6 C -0.24 -6.36 8.95 -15.06 -0.13 -6.50 16 7 H 0.05 1.48 7.93 -52.49 -0.42 1.06 16 8 C 0.02 0.60 4.90 -17.43 -0.09 0.51 16 9 N -0.89 -24.48 11.58 55.49 0.64 -23.84 16 10 Si 0.89 21.83 29.61 -169.99 -5.03 16.80 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 14 C 0.16 3.10 4.94 -4.04 -0.02 3.08 16 15 C -0.07 -1.34 2.78 -91.77 -0.26 -1.60 16 16 H 0.08 1.75 7.87 -51.93 -0.41 1.34 16 17 C -0.13 -2.30 7.61 37.16 0.28 -2.02 16 18 C -0.06 -0.97 4.78 -104.62 -0.50 -1.47 16 19 C -0.09 -1.27 8.79 -39.59 -0.35 -1.61 16 20 C -0.15 -2.00 10.03 -39.51 -0.40 -2.40 16 21 C 0.07 1.01 7.30 -39.41 -0.29 0.72 16 22 F -0.15 -2.08 17.27 2.25 0.04 -2.04 16 23 C -0.15 -2.03 10.03 -39.51 -0.40 -2.43 16 24 C -0.09 -1.33 9.67 -39.59 -0.38 -1.72 16 25 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.10 2.53 5.58 -51.93 -0.29 2.24 16 31 H 0.05 0.89 6.26 -51.93 -0.33 0.57 16 32 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 33 H 0.03 0.59 7.38 -51.93 -0.38 0.21 16 34 H 0.04 0.85 8.06 -51.93 -0.42 0.43 16 35 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.04 0.60 7.48 -51.93 -0.39 0.21 16 37 H 0.08 1.76 6.61 -51.93 -0.34 1.41 16 38 H 0.13 1.64 7.20 -52.49 -0.38 1.26 16 39 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 40 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 41 H 0.13 1.78 7.94 -52.49 -0.42 1.36 16 LS Contribution 339.58 15.07 5.12 5.12 Total: -1.00 -28.17 339.58 -7.45 -35.62 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -6.29 Total: -0.42 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -1.20 Total: -9.61 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 0.27 Total: -37.38 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: -0.36 Total: -8.10 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.04 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.17 -7.45 -35.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453603563.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.134 kcal (2) G-P(sol) polarization free energy of solvation -28.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds