Wall clock time and date at job start Tue Mar 31 2020 05:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42911 * 114.00159 * 2 1 4 4 C 1.52995 * 109.47347 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.46970 * 64.99677 * 4 3 2 6 6 C 1.36938 * 120.00434 * 269.99785 * 5 4 3 7 7 H 1.07996 * 119.99586 * 142.65205 * 6 5 4 8 8 C 1.38809 * 120.00001 * 322.65581 * 6 5 4 9 9 N 1.31622 * 119.99946 * 336.66506 * 8 6 5 10 10 Si 1.86802 * 120.00276 * 156.66016 * 8 6 5 11 11 H 1.48500 * 109.46713 * 59.99666 * 10 8 6 12 12 H 1.48490 * 109.47430 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.46838 * 300.00454 * 10 8 6 14 14 C 1.46500 * 119.99690 * 90.00620 * 5 4 3 15 15 C 1.52997 * 109.47473 * 91.97726 * 14 5 4 16 16 H 1.08997 * 109.46885 * 57.41254 * 15 14 5 17 17 C 1.52998 * 109.47187 * 297.41321 * 15 14 5 18 18 C 1.50702 * 109.47156 * 177.41188 * 15 14 5 19 19 C 1.38246 * 119.97301 * 59.72284 * 18 15 14 20 20 C 1.38197 * 120.02815 * 179.76661 * 19 18 15 21 21 C 1.38470 * 119.96947 * 0.50981 * 20 19 18 22 22 F 1.35098 * 120.02392 * 179.76471 * 21 20 19 23 23 C 1.38458 * 119.94983 * 359.74892 * 21 20 19 24 24 C 1.38206 * 119.97421 * 359.97438 * 23 21 20 25 25 H 1.09001 * 109.46985 * 300.00112 * 1 2 3 26 26 H 1.08999 * 109.47065 * 59.99967 * 1 2 3 27 27 H 1.08998 * 109.47381 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46497 * 60.00119 * 3 2 1 29 29 H 1.08993 * 109.46937 * 300.00372 * 3 2 1 30 30 H 1.09000 * 109.47256 * 305.00008 * 4 3 2 31 31 H 1.08993 * 109.47648 * 185.00008 * 4 3 2 32 32 H 0.97006 * 120.00151 * 180.02562 * 9 8 6 33 33 H 1.08997 * 109.47123 * 331.97519 * 14 5 4 34 34 H 1.08999 * 109.47051 * 211.98263 * 14 5 4 35 35 H 1.09004 * 109.47033 * 185.96295 * 17 15 14 36 36 H 1.08999 * 109.47002 * 305.95994 * 17 15 14 37 37 H 1.09000 * 109.47132 * 65.96313 * 17 15 14 38 38 H 1.08000 * 119.98899 * 0.02562 * 19 18 15 39 39 H 1.07993 * 120.01839 * 180.25574 * 20 19 18 40 40 H 1.07997 * 120.01243 * 179.97438 * 23 21 20 41 41 H 1.07990 * 119.98853 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 4.0968 -0.7970 -1.3369 7 1 3.8248 -1.3079 -2.2487 8 6 4.5690 -1.5202 -0.2503 9 7 5.3140 -0.9295 0.6599 10 14 4.1471 -3.3320 -0.0797 11 1 4.6653 -4.0739 -1.2571 12 1 4.7683 -3.8706 1.1568 13 1 2.6727 -3.4918 -0.0037 14 6 4.2864 1.4007 -2.4148 15 6 5.7769 1.7461 -2.4107 16 1 6.3627 0.8269 -2.4103 17 6 6.1078 2.5624 -1.1597 18 6 6.1089 2.5529 -3.6395 19 6 5.4808 3.7644 -3.8608 20 6 5.7879 4.5075 -4.9847 21 6 6.7175 4.0332 -5.8948 22 9 7.0152 4.7565 -6.9963 23 6 7.3421 2.8172 -5.6748 24 6 7.0374 2.0785 -4.5472 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 3.8515 0.5683 0.8409 31 1 3.9786 2.1765 0.0889 32 1 5.6443 -1.4350 1.4190 33 1 3.7006 2.3187 -2.3688 34 1 4.0414 0.8588 -3.3283 35 1 7.1437 2.8983 -1.2086 36 1 5.4474 3.4278 -1.1054 37 1 5.9682 1.9426 -0.2740 38 1 4.7528 4.1323 -3.1529 39 1 5.3002 5.4558 -5.1553 40 1 8.0670 2.4461 -6.3842 41 1 7.5247 1.1303 -4.3751 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453603563.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:27 Heat of formation + Delta-G solvation = -65.557175 kcal Electronic energy + Delta-G solvation = -22376.547865 eV Core-core repulsion = 18978.003489 eV Total energy + Delta-G solvation = -3398.544376 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.82241 -40.35261 -38.81571 -37.43145 -34.93629 -32.88106 -32.01558 -30.51862 -29.65348 -27.30588 -27.09716 -25.18643 -24.10393 -23.50491 -22.11280 -20.82111 -18.58530 -18.51013 -17.39874 -17.11928 -16.80318 -16.52462 -16.44385 -16.30199 -15.65679 -15.38004 -15.34692 -14.86520 -14.52879 -14.34893 -14.18179 -13.80856 -13.44543 -13.39292 -12.99206 -12.94436 -12.64799 -12.49172 -12.33935 -12.27958 -12.07476 -11.99708 -11.72014 -11.49620 -11.40209 -11.30172 -10.36514 -10.30016 -9.97955 -9.43252 -8.40488 -7.69744 -5.24572 0.26075 0.36213 1.48391 1.52729 1.59570 2.61736 2.71343 3.25160 3.36128 3.42395 3.66749 3.85106 4.02731 4.14784 4.28177 4.43339 4.45342 4.54631 4.55977 4.57344 4.65641 4.70967 4.79526 4.84298 4.91603 4.99609 5.03873 5.04233 5.17509 5.20488 5.23179 5.28471 5.37270 5.49478 5.68483 5.79234 5.84140 5.89114 6.03578 6.53637 6.71327 7.32419 8.01503 8.51490 9.26236 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.019830 B = 0.004573 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.679418 B = 6121.553139 C = 6827.624566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.399 6.399 3 C 0.050 3.950 4 C 0.143 3.857 5 N -0.583 5.583 6 C -0.239 4.239 7 H 0.040 0.960 8 C -0.018 4.018 9 N -0.909 5.909 10 Si 0.936 3.064 11 H -0.282 1.282 12 H -0.297 1.297 13 H -0.288 1.288 14 C 0.160 3.840 15 C -0.061 4.061 16 H 0.047 0.953 17 C -0.122 4.122 18 C -0.077 4.077 19 C -0.089 4.089 20 C -0.147 4.147 21 C 0.067 3.933 22 F -0.149 7.149 23 C -0.151 4.151 24 C -0.102 4.102 25 H 0.047 0.953 26 H 0.043 0.957 27 H 0.078 0.922 28 H 0.047 0.953 29 H 0.040 0.960 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.246 0.754 33 H 0.058 0.942 34 H 0.030 0.970 35 H 0.043 0.957 36 H 0.061 0.939 37 H 0.047 0.953 38 H 0.145 0.855 39 H 0.154 0.846 40 H 0.148 0.852 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.835 10.936 -7.018 13.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.318 6.318 3 C -0.028 4.028 4 C 0.016 3.984 5 N -0.302 5.302 6 C -0.370 4.370 7 H 0.057 0.943 8 C -0.215 4.215 9 N -0.554 5.554 10 Si 0.767 3.233 11 H -0.208 1.208 12 H -0.223 1.223 13 H -0.214 1.214 14 C 0.034 3.966 15 C -0.082 4.082 16 H 0.066 0.934 17 C -0.179 4.179 18 C -0.078 4.078 19 C -0.107 4.107 20 C -0.166 4.166 21 C 0.048 3.952 22 F -0.128 7.128 23 C -0.169 4.169 24 C -0.120 4.120 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.097 0.903 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.048 0.952 35 H 0.062 0.938 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.163 0.837 39 H 0.172 0.828 40 H 0.165 0.835 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.643 10.727 -6.918 12.869 hybrid contribution -0.192 -1.026 0.119 1.051 sum -1.836 9.700 -6.799 11.987 Atomic orbital electron populations 1.22802 0.81780 1.02419 1.00048 1.88152 1.19454 1.28966 1.95179 1.23327 0.97208 0.83891 0.98394 1.21009 0.89270 0.96770 0.91320 1.43780 1.75213 1.01997 1.09224 1.18808 1.35392 0.83340 0.99462 0.94276 1.25398 0.96877 0.99752 0.99502 1.70085 1.34388 1.36797 1.14082 0.85841 0.77795 0.83230 0.76461 1.20796 1.22304 1.21437 1.21018 0.91833 0.93779 0.89945 1.20620 0.99689 0.96313 0.91584 0.93400 1.21636 0.99994 0.98919 0.97324 1.20203 0.95938 0.95358 0.96264 1.21027 0.99295 0.93435 0.96982 1.21322 0.98653 1.02130 0.94490 1.17862 0.99874 0.92008 0.85453 1.91456 1.92541 1.77287 1.51541 1.21258 1.02085 0.94093 0.99509 1.21113 0.97492 1.00021 0.93378 0.93470 0.93871 0.90320 0.93510 0.94223 0.92063 0.91893 0.94480 0.92361 0.95184 0.93760 0.92015 0.93347 0.83721 0.82835 0.83473 0.85130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 11.01 113.37 1.25 2.07 16 2 O -0.40 -17.08 10.18 -148.98 -1.52 -18.60 16 3 C 0.05 1.91 6.28 71.98 0.45 2.36 16 4 C 0.14 6.21 4.79 86.38 0.41 6.63 16 5 N -0.58 -26.98 2.16 -702.03 -1.52 -28.50 16 6 C -0.24 -12.83 8.95 84.03 0.75 -12.07 16 7 H 0.04 2.19 7.93 -2.91 -0.02 2.16 16 8 C -0.02 -0.98 4.90 84.86 0.42 -0.56 16 9 N -0.91 -51.56 11.58 21.65 0.25 -51.31 16 10 Si 0.94 45.77 29.61 68.60 2.03 47.81 16 11 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 12 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 13 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 14 C 0.16 6.16 4.94 86.38 0.43 6.58 16 15 C -0.06 -2.17 2.78 -11.54 -0.03 -2.20 16 16 H 0.05 2.04 7.87 -2.39 -0.02 2.02 16 17 C -0.12 -4.16 7.61 71.98 0.55 -3.62 16 18 C -0.08 -2.25 4.78 -19.86 -0.09 -2.35 16 19 C -0.09 -2.22 8.79 22.26 0.20 -2.02 16 20 C -0.15 -3.36 10.03 22.32 0.22 -3.13 16 21 C 0.07 1.67 7.30 22.38 0.16 1.83 16 22 F -0.15 -3.75 17.27 44.97 0.78 -2.98 16 23 C -0.15 -3.73 10.03 22.31 0.22 -3.50 16 24 C -0.10 -2.83 9.67 22.26 0.22 -2.61 16 25 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.06 3.20 5.58 -2.39 -0.01 3.18 16 31 H 0.06 2.44 6.26 -2.39 -0.01 2.43 16 32 H 0.25 13.79 8.31 -92.70 -0.77 13.02 16 33 H 0.06 1.94 7.38 -2.39 -0.02 1.92 16 34 H 0.03 1.21 8.06 -2.39 -0.02 1.19 16 35 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 36 H 0.06 1.79 7.48 -2.39 -0.02 1.78 16 37 H 0.05 2.02 6.61 -2.39 -0.02 2.01 16 38 H 0.15 3.12 7.20 -2.91 -0.02 3.09 16 39 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 40 H 0.15 3.00 8.06 -2.91 -0.02 2.97 16 41 H 0.13 3.55 7.94 -2.92 -0.02 3.53 16 Total: -1.00 -61.40 339.58 6.18 -55.23 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: 1.00 Total: 10.96 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: 5.15 Total: -12.61 kcal Atomic # 7 Polarization: -78.55 SS G_CDS: -1.27 Total: -79.81 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -1.52 Total: -18.60 kcal Atomic # 9 Polarization: -3.75 SS G_CDS: 0.78 Total: -2.98 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.81 kcal Total: -61.40 6.18 -55.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453603563.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.331 kcal (2) G-P(sol) polarization free energy of solvation -61.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds