Wall clock time and date at job start Tue Mar 31 2020 05:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 114.00041 * 2 1 4 4 C 1.52996 * 109.47314 * 179.97438 * 3 2 1 5 5 N 1.46511 * 109.47110 * 64.99688 * 4 3 2 6 6 C 1.36936 * 119.99814 * 269.99797 * 5 4 3 7 7 H 1.07995 * 120.00186 * 329.23816 * 6 5 4 8 8 C 1.38813 * 119.99596 * 149.23376 * 6 5 4 9 9 N 1.31625 * 120.00125 * 332.69750 * 8 6 5 10 10 Si 1.86801 * 119.99757 * 152.70052 * 8 6 5 11 11 H 1.48507 * 109.47005 * 84.99973 * 10 8 6 12 12 H 1.48500 * 109.46756 * 204.99558 * 10 8 6 13 13 H 1.48498 * 109.47314 * 324.99763 * 10 8 6 14 14 C 1.46496 * 119.99630 * 89.99868 * 5 4 3 15 15 C 1.52998 * 109.47133 * 85.52996 * 14 5 4 16 16 C 1.53002 * 109.47266 * 179.97438 * 15 14 5 17 17 C 1.50702 * 109.47485 * 179.97438 * 16 15 14 18 18 C 1.38263 * 119.98196 * 270.25305 * 17 16 15 19 19 C 1.38229 * 120.04962 * 180.24967 * 18 17 16 20 20 C 1.38222 * 120.02367 * 359.49339 * 19 18 17 21 21 C 1.38443 * 119.97435 * 0.24979 * 20 19 18 22 22 F 1.35100 * 120.02580 * 179.97438 * 21 20 19 23 23 C 1.38169 * 119.98907 * 89.99212 * 17 16 15 24 24 H 1.08995 * 109.47153 * 60.00926 * 1 2 3 25 25 H 1.09002 * 109.46438 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47052 * 300.00125 * 1 2 3 27 27 H 1.08996 * 109.47129 * 59.99264 * 3 2 1 28 28 H 1.09004 * 109.46735 * 299.99557 * 3 2 1 29 29 H 1.08995 * 109.47087 * 304.99519 * 4 3 2 30 30 H 1.09001 * 109.47002 * 184.99123 * 4 3 2 31 31 H 0.96997 * 119.99541 * 180.02562 * 9 8 6 32 32 H 1.08999 * 109.47492 * 325.52529 * 14 5 4 33 33 H 1.09005 * 109.47125 * 205.52433 * 14 5 4 34 34 H 1.08999 * 109.47313 * 59.99424 * 15 14 5 35 35 H 1.08999 * 109.47185 * 299.99313 * 15 14 5 36 36 H 1.08999 * 109.47310 * 59.99562 * 16 15 14 37 37 H 1.09001 * 109.46766 * 299.99321 * 16 15 14 38 38 H 1.08000 * 119.98139 * 0.02562 * 18 17 16 39 39 H 1.07996 * 119.99129 * 179.76538 * 19 18 17 40 40 H 1.07998 * 120.01850 * 180.22855 * 20 19 18 41 41 H 1.08007 * 120.01316 * 0.02775 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.0979 -0.7975 -1.3344 7 1 4.3621 -1.3708 -0.4581 8 6 3.8811 -1.4406 -2.5453 9 7 3.0768 -0.9060 -3.4396 10 14 4.7306 -3.0648 -2.9054 11 1 3.9320 -4.1786 -2.3334 12 1 4.8507 -3.2455 -4.3745 13 1 6.0841 -3.0617 -2.2947 14 6 4.2883 1.3998 -2.4130 15 6 5.7389 1.8778 -2.3232 16 6 6.0645 2.7502 -3.5372 17 6 7.4931 3.2217 -3.4485 18 6 7.7907 4.4066 -2.8012 19 6 9.1000 4.8430 -2.7234 20 6 10.1145 4.0897 -3.2838 21 6 9.8182 2.9004 -3.9275 22 9 10.8089 2.1636 -4.4761 23 6 8.5055 2.4670 -4.0093 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.6886 1.8464 0.8899 28 1 1.6887 1.8463 -0.8901 29 1 3.8508 0.5687 0.8427 30 1 3.9784 2.1766 0.0901 31 1 2.9251 -1.3557 -4.2856 32 1 3.6218 2.2621 -2.4295 33 1 4.1531 0.8186 -3.3253 34 1 6.4053 1.0155 -2.3067 35 1 5.8741 2.4590 -1.4111 36 1 5.3980 3.6126 -3.5542 37 1 5.9294 2.1687 -4.4492 38 1 6.9993 4.9936 -2.3590 39 1 9.3310 5.7705 -2.2209 40 1 11.1378 4.4288 -3.2198 41 1 8.2731 1.5395 -4.5116 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459529475.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:58 Heat of formation + Delta-G solvation = -54.309473 kcal Electronic energy + Delta-G solvation = -21803.821017 eV Core-core repulsion = 18405.764377 eV Total energy + Delta-G solvation = -3398.056639 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.82989 -39.11788 -37.20049 -35.74598 -33.62630 -31.45116 -30.58917 -30.02870 -28.07423 -25.58712 -25.56545 -23.32626 -22.65792 -21.99131 -20.72922 -19.66285 -17.21599 -16.61210 -16.27341 -16.08950 -15.58666 -15.52694 -15.13630 -14.68292 -14.24952 -14.00591 -13.87337 -13.51664 -13.36632 -13.18024 -12.79907 -12.51209 -12.09606 -11.73373 -11.59305 -11.31666 -11.22543 -11.08601 -10.85897 -10.70147 -10.64204 -10.39129 -10.21740 -9.94579 -9.72466 -9.50881 -8.86201 -8.75587 -8.56837 -8.31566 -6.55144 -5.68164 -3.10390 1.21897 1.27395 3.44882 3.52091 3.56220 3.64558 4.28710 4.59607 4.71918 4.75866 4.85531 5.08964 5.25750 5.40914 5.45231 5.48090 5.62444 5.78811 5.84191 5.94359 5.99966 6.06398 6.16105 6.16532 6.21530 6.23728 6.28661 6.31742 6.34556 6.40994 6.49113 6.67956 6.74770 6.82933 6.94128 6.97638 7.24917 7.76203 7.95814 8.12034 8.59257 9.30014 9.94265 10.48337 11.35529 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016794 B = 0.004442 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.827902 B = 6302.076623 C = 7539.054742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.353 6.353 3 C 0.046 3.954 4 C 0.144 3.856 5 N -0.578 5.578 6 C -0.234 4.234 7 H 0.062 0.938 8 C 0.008 3.992 9 N -0.886 5.886 10 Si 0.886 3.114 11 H -0.287 1.287 12 H -0.291 1.291 13 H -0.281 1.281 14 C 0.144 3.856 15 C -0.127 4.127 16 C -0.083 4.083 17 C -0.035 4.035 18 C -0.131 4.131 19 C -0.091 4.091 20 C -0.170 4.170 21 C 0.097 3.903 22 F -0.144 7.144 23 C -0.153 4.153 24 H 0.031 0.969 25 H 0.074 0.926 26 H 0.022 0.978 27 H 0.020 0.980 28 H 0.036 0.964 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.250 0.750 32 H 0.018 0.982 33 H 0.101 0.899 34 H 0.060 0.940 35 H 0.044 0.956 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.163 11.609 1.356 13.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.271 6.271 3 C -0.033 4.033 4 C 0.017 3.983 5 N -0.297 5.297 6 C -0.364 4.364 7 H 0.080 0.920 8 C -0.191 4.191 9 N -0.529 5.529 10 Si 0.716 3.284 11 H -0.214 1.214 12 H -0.218 1.218 13 H -0.207 1.207 14 C 0.018 3.982 15 C -0.167 4.167 16 C -0.121 4.121 17 C -0.035 4.035 18 C -0.150 4.150 19 C -0.110 4.110 20 C -0.189 4.189 21 C 0.078 3.922 22 F -0.123 7.123 23 C -0.171 4.171 24 H 0.050 0.950 25 H 0.093 0.907 26 H 0.041 0.959 27 H 0.038 0.962 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.036 0.964 33 H 0.118 0.882 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.146 0.854 39 H 0.146 0.854 40 H 0.147 0.853 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.257 11.330 1.182 12.997 hybrid contribution 0.276 -0.728 -0.363 0.859 sum 6.533 10.602 0.819 12.480 Atomic orbital electron populations 1.22572 0.83838 1.01508 0.98211 1.88154 1.16976 1.27166 1.94791 1.23338 0.98213 0.84690 0.97108 1.21026 0.89462 0.96340 0.91471 1.43886 1.74830 1.02987 1.07991 1.18949 1.39442 0.82286 0.95690 0.92039 1.24855 0.97960 0.97070 0.99235 1.70086 1.33991 1.40091 1.08769 0.86572 0.80281 0.84618 0.76958 1.21437 1.21751 1.20682 1.20967 0.89442 0.93196 0.94602 1.22214 1.01963 0.97929 0.94590 1.20715 0.90096 1.00255 1.01022 1.20014 0.96334 0.93176 0.94009 1.21145 0.96669 0.96791 1.00353 1.20955 0.92334 0.99301 0.98363 1.21041 1.00649 0.95043 1.02126 1.17737 0.85129 0.91368 0.97943 1.91482 1.60688 1.76439 1.83658 1.21138 0.90814 1.01777 1.03409 0.95013 0.90726 0.95937 0.96241 0.94564 0.93117 0.93205 0.94027 0.96385 0.88179 0.92073 0.93740 0.91117 0.90721 0.85440 0.85367 0.85282 0.84673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 11.01 101.05 1.11 1.76 16 2 O -0.35 -7.99 10.18 -35.23 -0.36 -8.35 16 3 C 0.05 0.93 6.28 37.16 0.23 1.16 16 4 C 0.14 2.99 6.12 -4.04 -0.02 2.97 16 5 N -0.58 -14.00 2.45 -173.24 -0.42 -14.42 16 6 C -0.23 -6.39 8.98 -15.06 -0.14 -6.52 16 7 H 0.06 1.72 7.96 -52.49 -0.42 1.30 16 8 C 0.01 0.21 4.82 -17.43 -0.08 0.13 16 9 N -0.89 -25.33 11.44 55.49 0.63 -24.70 16 10 Si 0.89 21.90 29.63 -169.99 -5.04 16.86 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 14 C 0.14 3.20 5.27 -4.05 -0.02 3.18 16 15 C -0.13 -2.35 5.52 -26.73 -0.15 -2.50 16 16 C -0.08 -1.26 5.34 -27.88 -0.15 -1.41 16 17 C -0.04 -0.49 5.13 -104.64 -0.54 -1.03 16 18 C -0.13 -1.60 9.70 -39.58 -0.38 -1.98 16 19 C -0.09 -0.99 10.04 -39.59 -0.40 -1.39 16 20 C -0.17 -2.00 10.03 -39.51 -0.40 -2.39 16 21 C 0.10 1.35 7.30 -39.42 -0.29 1.07 16 22 F -0.14 -2.08 17.27 2.25 0.04 -2.05 16 23 C -0.15 -2.22 9.68 -39.52 -0.38 -2.60 16 24 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.05 1.06 8.04 -51.93 -0.42 0.65 16 30 H 0.05 0.89 8.07 -51.93 -0.42 0.48 16 31 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.02 0.38 8.11 -51.93 -0.42 -0.04 16 33 H 0.10 2.55 5.31 -51.93 -0.28 2.28 16 34 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.97 8.09 -51.93 -0.42 0.55 16 37 H 0.07 1.17 8.09 -51.93 -0.42 0.75 16 38 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 39 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 41 H 0.14 1.95 8.06 -52.48 -0.42 1.53 16 LS Contribution 348.72 15.07 5.26 5.26 Total: -1.00 -30.24 348.72 -8.07 -38.31 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -6.58 Total: -1.33 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -1.60 Total: -9.57 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.21 Total: -39.12 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: -0.36 Total: -8.35 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.05 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.04 Total: 16.86 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.24 -8.07 -38.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459529475.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.001 kcal (2) G-P(sol) polarization free energy of solvation -30.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds