Wall clock time and date at job start Tue Mar 31 2020 05:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 114.00041 * 2 1 4 4 C 1.52996 * 109.47314 * 179.97438 * 3 2 1 5 5 N 1.46511 * 109.47110 * 64.99688 * 4 3 2 6 6 C 1.36936 * 119.99814 * 269.99797 * 5 4 3 7 7 H 1.07995 * 120.00186 * 329.23816 * 6 5 4 8 8 C 1.38813 * 119.99596 * 149.23376 * 6 5 4 9 9 N 1.31625 * 120.00125 * 332.69750 * 8 6 5 10 10 Si 1.86801 * 119.99757 * 152.70052 * 8 6 5 11 11 H 1.48507 * 109.47005 * 84.99973 * 10 8 6 12 12 H 1.48500 * 109.46756 * 204.99558 * 10 8 6 13 13 H 1.48498 * 109.47314 * 324.99763 * 10 8 6 14 14 C 1.46496 * 119.99630 * 89.99868 * 5 4 3 15 15 C 1.52998 * 109.47133 * 85.52996 * 14 5 4 16 16 C 1.53002 * 109.47266 * 179.97438 * 15 14 5 17 17 C 1.50702 * 109.47485 * 179.97438 * 16 15 14 18 18 C 1.38263 * 119.98196 * 270.25305 * 17 16 15 19 19 C 1.38229 * 120.04962 * 180.24967 * 18 17 16 20 20 C 1.38222 * 120.02367 * 359.49339 * 19 18 17 21 21 C 1.38443 * 119.97435 * 0.24979 * 20 19 18 22 22 F 1.35100 * 120.02580 * 179.97438 * 21 20 19 23 23 C 1.38169 * 119.98907 * 89.99212 * 17 16 15 24 24 H 1.08995 * 109.47153 * 60.00926 * 1 2 3 25 25 H 1.09002 * 109.46438 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47052 * 300.00125 * 1 2 3 27 27 H 1.08996 * 109.47129 * 59.99264 * 3 2 1 28 28 H 1.09004 * 109.46735 * 299.99557 * 3 2 1 29 29 H 1.08995 * 109.47087 * 304.99519 * 4 3 2 30 30 H 1.09001 * 109.47002 * 184.99123 * 4 3 2 31 31 H 0.96997 * 119.99541 * 180.02562 * 9 8 6 32 32 H 1.08999 * 109.47492 * 325.52529 * 14 5 4 33 33 H 1.09005 * 109.47125 * 205.52433 * 14 5 4 34 34 H 1.08999 * 109.47313 * 59.99424 * 15 14 5 35 35 H 1.08999 * 109.47185 * 299.99313 * 15 14 5 36 36 H 1.08999 * 109.47310 * 59.99562 * 16 15 14 37 37 H 1.09001 * 109.46766 * 299.99321 * 16 15 14 38 38 H 1.08000 * 119.98139 * 0.02562 * 18 17 16 39 39 H 1.07996 * 119.99129 * 179.76538 * 19 18 17 40 40 H 1.07998 * 120.01850 * 180.22855 * 20 19 18 41 41 H 1.08007 * 120.01316 * 0.02775 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.0979 -0.7975 -1.3344 7 1 4.3621 -1.3708 -0.4581 8 6 3.8811 -1.4406 -2.5453 9 7 3.0768 -0.9060 -3.4396 10 14 4.7306 -3.0648 -2.9054 11 1 3.9320 -4.1786 -2.3334 12 1 4.8507 -3.2455 -4.3745 13 1 6.0841 -3.0617 -2.2947 14 6 4.2883 1.3998 -2.4130 15 6 5.7389 1.8778 -2.3232 16 6 6.0645 2.7502 -3.5372 17 6 7.4931 3.2217 -3.4485 18 6 7.7907 4.4066 -2.8012 19 6 9.1000 4.8430 -2.7234 20 6 10.1145 4.0897 -3.2838 21 6 9.8182 2.9004 -3.9275 22 9 10.8089 2.1636 -4.4761 23 6 8.5055 2.4670 -4.0093 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.6886 1.8464 0.8899 28 1 1.6887 1.8463 -0.8901 29 1 3.8508 0.5687 0.8427 30 1 3.9784 2.1766 0.0901 31 1 2.9251 -1.3557 -4.2856 32 1 3.6218 2.2621 -2.4295 33 1 4.1531 0.8186 -3.3253 34 1 6.4053 1.0155 -2.3067 35 1 5.8741 2.4590 -1.4111 36 1 5.3980 3.6126 -3.5542 37 1 5.9294 2.1687 -4.4492 38 1 6.9993 4.9936 -2.3590 39 1 9.3310 5.7705 -2.2209 40 1 11.1378 4.4288 -3.2198 41 1 8.2731 1.5395 -4.5116 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459529475.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:58 Heat of formation + Delta-G solvation = -69.956905 kcal Electronic energy + Delta-G solvation = -21804.499540 eV Core-core repulsion = 18405.764377 eV Total energy + Delta-G solvation = -3398.735163 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.90462 -40.13485 -38.84097 -37.43405 -34.99147 -33.41508 -31.67858 -31.24928 -29.71272 -27.23453 -27.00574 -25.04700 -23.66117 -23.40197 -22.00282 -21.38059 -18.68138 -18.11321 -17.34115 -17.18187 -17.05783 -16.89052 -16.60986 -16.45025 -15.77467 -15.60020 -15.26459 -15.02230 -14.69711 -14.42849 -14.06443 -13.81651 -13.60389 -13.18008 -13.05019 -12.71013 -12.66648 -12.60063 -12.48308 -12.41872 -12.08993 -12.05863 -11.85537 -11.59653 -11.56451 -11.23010 -10.40167 -10.29589 -9.87140 -9.58121 -8.52593 -7.75093 -5.19405 0.22686 0.29540 1.44657 1.47958 1.55860 2.57526 2.66657 3.18671 3.27921 3.37007 3.68658 3.82939 3.89928 4.15649 4.30077 4.34564 4.42515 4.47645 4.49018 4.61140 4.62404 4.67022 4.75788 4.78927 4.83698 4.85415 4.93140 5.05681 5.08952 5.16945 5.22902 5.25945 5.33698 5.42040 5.54076 5.69829 5.79513 5.94054 6.00651 6.51137 6.64110 7.27975 7.99128 8.46323 9.24313 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016794 B = 0.004442 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.827902 B = 6302.076623 C = 7539.054742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.397 6.397 3 C 0.050 3.950 4 C 0.139 3.861 5 N -0.594 5.594 6 C -0.233 4.233 7 H 0.048 0.952 8 C -0.037 4.037 9 N -0.911 5.911 10 Si 0.935 3.065 11 H -0.288 1.288 12 H -0.293 1.293 13 H -0.279 1.279 14 C 0.146 3.854 15 C -0.109 4.109 16 C -0.073 4.073 17 C -0.051 4.051 18 C -0.128 4.128 19 C -0.082 4.082 20 C -0.163 4.163 21 C 0.075 3.925 22 F -0.153 7.153 23 C -0.173 4.173 24 H 0.027 0.973 25 H 0.079 0.921 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.023 0.977 29 H 0.044 0.956 30 H 0.082 0.918 31 H 0.245 0.755 32 H 0.027 0.973 33 H 0.066 0.934 34 H 0.030 0.970 35 H 0.059 0.941 36 H 0.091 0.909 37 H 0.059 0.941 38 H 0.151 0.849 39 H 0.168 0.832 40 H 0.154 0.846 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.814 14.066 2.775 15.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.316 6.316 3 C -0.029 4.029 4 C 0.013 3.987 5 N -0.314 5.314 6 C -0.364 4.364 7 H 0.066 0.934 8 C -0.233 4.233 9 N -0.556 5.556 10 Si 0.765 3.235 11 H -0.215 1.215 12 H -0.219 1.219 13 H -0.205 1.205 14 C 0.021 3.979 15 C -0.148 4.148 16 C -0.111 4.111 17 C -0.051 4.051 18 C -0.146 4.146 19 C -0.100 4.100 20 C -0.182 4.182 21 C 0.056 3.944 22 F -0.132 7.132 23 C -0.192 4.192 24 H 0.046 0.954 25 H 0.097 0.903 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.041 0.959 29 H 0.063 0.937 30 H 0.100 0.900 31 H 0.054 0.946 32 H 0.045 0.955 33 H 0.083 0.917 34 H 0.049 0.951 35 H 0.078 0.922 36 H 0.109 0.891 37 H 0.077 0.923 38 H 0.169 0.831 39 H 0.185 0.815 40 H 0.172 0.828 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.912 13.802 2.615 15.656 hybrid contribution 0.068 -1.416 -0.725 1.593 sum 6.980 12.386 1.890 14.342 Atomic orbital electron populations 1.22716 0.81681 1.02360 0.99557 1.88081 1.19573 1.28831 1.95115 1.23278 0.97365 0.84089 0.98209 1.21201 0.90424 0.97565 0.89520 1.44079 1.75522 1.02318 1.09455 1.19019 1.38304 0.83932 0.95173 0.93407 1.25358 0.98884 0.99605 0.99449 1.70190 1.35373 1.41220 1.08863 0.85786 0.79372 0.81883 0.76450 1.21544 1.21934 1.20488 1.20890 0.91821 0.92594 0.92642 1.21908 0.98569 0.97498 0.96857 1.20552 0.91757 1.00119 0.98684 1.19913 0.95113 0.94481 0.95618 1.21457 0.98159 0.95808 0.99209 1.21396 0.91279 1.00145 0.97153 1.21413 1.02392 0.93783 1.00592 1.17982 0.84667 0.92513 0.99190 1.91452 1.60871 1.76896 1.84001 1.21163 0.91816 1.01814 1.04417 0.95420 0.90290 0.92641 0.92403 0.95856 0.93727 0.89978 0.94579 0.95454 0.91662 0.95060 0.92248 0.89078 0.92254 0.83146 0.81470 0.82782 0.86194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.15 11.01 113.37 1.25 2.40 16 2 O -0.40 -17.72 10.18 -148.98 -1.52 -19.24 16 3 C 0.05 1.90 6.28 71.98 0.45 2.36 16 4 C 0.14 5.58 6.12 86.38 0.53 6.11 16 5 N -0.59 -28.86 2.45 -702.00 -1.72 -30.58 16 6 C -0.23 -12.98 8.98 84.03 0.75 -12.23 16 7 H 0.05 2.74 7.96 -2.91 -0.02 2.72 16 8 C -0.04 -2.08 4.82 84.86 0.41 -1.67 16 9 N -0.91 -53.64 11.44 21.65 0.25 -53.39 16 10 Si 0.94 46.25 29.63 68.60 2.03 48.28 16 11 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 12 H -0.29 -14.43 7.11 99.48 0.71 -13.73 16 13 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 14 C 0.15 6.55 5.27 86.38 0.46 7.00 16 15 C -0.11 -3.99 5.52 30.59 0.17 -3.82 16 16 C -0.07 -2.19 5.34 29.85 0.16 -2.03 16 17 C -0.05 -1.38 5.13 -19.87 -0.10 -1.49 16 18 C -0.13 -2.70 9.70 22.27 0.22 -2.48 16 19 C -0.08 -1.44 10.04 22.26 0.22 -1.22 16 20 C -0.16 -3.38 10.03 22.31 0.22 -3.15 16 21 C 0.08 2.05 7.30 22.38 0.16 2.21 16 22 F -0.15 -4.45 17.27 44.97 0.78 -3.67 16 23 C -0.17 -5.10 9.68 22.31 0.22 -4.89 16 24 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 26 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 29 H 0.04 1.83 8.04 -2.39 -0.02 1.81 16 30 H 0.08 2.72 8.07 -2.39 -0.02 2.70 16 31 H 0.24 14.10 8.31 -92.71 -0.77 13.33 16 32 H 0.03 1.14 8.11 -2.39 -0.02 1.12 16 33 H 0.07 3.44 5.31 -2.38 -0.01 3.43 16 34 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.09 2.34 8.09 -2.39 -0.02 2.32 16 37 H 0.06 1.93 8.09 -2.39 -0.02 1.91 16 38 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 39 H 0.17 1.68 8.06 -2.91 -0.02 1.65 16 40 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 41 H 0.12 3.74 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -67.06 348.72 5.93 -61.14 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 0.99 Total: 10.37 kcal Atomic # 6 Polarization: -18.02 SS G_CDS: 5.12 Total: -12.90 kcal Atomic # 7 Polarization: -82.50 SS G_CDS: -1.47 Total: -83.97 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -1.52 Total: -19.24 kcal Atomic # 9 Polarization: -4.45 SS G_CDS: 0.78 Total: -3.67 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -67.06 5.93 -61.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459529475.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.821 kcal (2) G-P(sol) polarization free energy of solvation -67.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds