Wall clock time and date at job start Tue Mar 31 2020 05:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35895 * 117.00168 * 2 1 4 4 C 1.38714 * 120.04336 * 0.02562 * 3 2 1 5 5 C 1.38332 * 119.92220 * 180.02562 * 4 3 2 6 6 F 1.35105 * 120.00000 * 180.02562 * 5 4 3 7 7 C 1.38518 * 120.00690 * 0.02562 * 5 4 3 8 8 C 1.38215 * 120.08339 * 359.97438 * 7 5 4 9 9 C 1.50701 * 119.96053 * 180.02562 * 8 7 5 10 10 N 1.46898 * 109.46956 * 90.00050 * 9 8 7 11 11 C 1.46903 * 111.00168 * 180.02562 * 10 9 8 12 12 C 1.52998 * 109.47303 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.46768 * 299.99348 * 12 11 10 14 14 C 1.52998 * 109.47491 * 59.99717 * 12 11 10 15 15 C 1.50706 * 109.46681 * 180.02562 * 12 11 10 16 16 H 1.07996 * 120.00421 * 1.23499 * 15 12 11 17 17 C 1.37882 * 119.99629 * 181.24212 * 15 12 11 18 18 N 1.31508 * 119.99773 * 194.10987 * 17 15 12 19 19 Si 1.86802 * 120.00003 * 14.10585 * 17 15 12 20 20 H 1.48502 * 109.47213 * 84.53712 * 19 17 15 21 21 H 1.48500 * 109.47030 * 204.53439 * 19 17 15 22 22 H 1.48495 * 109.47220 * 324.53515 * 19 17 15 23 23 C 1.38175 * 120.07887 * 359.97438 * 8 7 5 24 24 H 1.09005 * 109.47195 * 299.99761 * 1 2 3 25 25 H 1.08997 * 109.47170 * 59.99888 * 1 2 3 26 26 H 1.08999 * 109.47398 * 180.02562 * 1 2 3 27 27 H 1.08000 * 120.03676 * 0.27575 * 4 3 2 28 28 H 1.07995 * 119.96174 * 179.97438 * 7 5 4 29 29 H 1.08995 * 109.47213 * 209.99867 * 9 8 7 30 30 H 1.09002 * 109.47082 * 330.00250 * 9 8 7 31 31 H 1.00908 * 111.00007 * 303.95074 * 10 9 8 32 32 H 1.09005 * 109.46901 * 300.00143 * 11 10 9 33 33 H 1.09003 * 109.47197 * 59.99390 * 11 10 9 34 34 H 1.09000 * 109.46897 * 69.52430 * 13 12 11 35 35 H 1.09002 * 109.47187 * 189.51663 * 13 12 11 36 36 H 1.09000 * 109.47733 * 309.51730 * 13 12 11 37 37 H 1.09005 * 109.46846 * 59.99955 * 14 12 11 38 38 H 1.08997 * 109.47248 * 180.02562 * 14 12 11 39 39 H 1.08998 * 109.46885 * 300.00372 * 14 12 11 40 40 H 0.96999 * 119.99749 * 179.97438 * 18 17 15 41 41 H 1.07999 * 120.00345 * 179.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3748 0.0005 5 6 1.9221 3.6060 0.0000 6 9 1.1887 4.7406 0.0010 7 6 3.3055 3.6757 -0.0016 8 6 4.0576 2.5161 -0.0021 9 6 5.5625 2.5951 -0.0033 10 7 6.0526 2.6208 1.3813 11 6 7.5190 2.6985 1.4194 12 6 7.9908 2.7226 2.8747 13 6 7.3971 3.9418 3.5831 14 6 7.5291 1.4468 3.5818 15 6 9.4953 2.8029 2.9136 16 1 10.0574 2.8538 1.9929 17 6 10.1540 2.8112 4.1249 18 7 11.4217 3.1565 4.1815 19 14 9.2457 2.3322 5.6854 20 1 9.2647 0.8550 5.8356 21 1 9.9106 2.9574 6.8568 22 1 7.8399 2.8035 5.6043 23 6 3.4313 1.2844 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 0.2128 2.3198 0.0055 28 1 3.7971 4.6372 -0.0024 29 1 5.9717 1.7254 -0.5174 30 1 5.8783 3.5029 -0.5174 31 1 5.6370 3.3815 1.8979 32 1 7.9421 1.8297 0.9150 33 1 7.8480 3.6072 0.9152 34 1 6.3227 3.8038 3.7046 35 1 7.8619 4.0550 4.5625 36 1 7.5836 4.8351 2.9870 37 1 7.9522 0.5782 3.0770 38 1 7.8649 1.4642 4.6186 39 1 6.4410 1.3892 3.5535 40 1 11.8850 3.1627 5.0337 41 1 4.0202 0.3791 -0.0014 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459684287.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:35 Heat of formation + Delta-G solvation = -45.562713 kcal Electronic energy + Delta-G solvation = -21822.337424 eV Core-core repulsion = 18424.660072 eV Total energy + Delta-G solvation = -3397.677351 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.07721 -40.32805 -38.12005 -36.96204 -34.16773 -31.79861 -30.68433 -30.34646 -27.66630 -26.21263 -26.07386 -25.00322 -23.34786 -22.80053 -21.30636 -18.86078 -18.18990 -17.18539 -16.35874 -16.20878 -16.15554 -16.01836 -15.56519 -15.47495 -14.94201 -14.71606 -14.18031 -13.80773 -13.22790 -13.00165 -12.80140 -12.55030 -12.53372 -12.40157 -11.95647 -11.93777 -11.82944 -11.65143 -11.32266 -11.14693 -10.90020 -10.29062 -10.06223 -10.00005 -9.85019 -9.02948 -8.92365 -8.54316 -8.45823 -8.35266 -7.93492 -6.07303 -4.03061 0.95587 1.10287 2.93145 3.34426 3.38059 3.43889 3.47142 4.00888 4.43721 4.45550 4.68818 4.73207 4.81996 4.86957 4.91744 5.05275 5.15998 5.19939 5.26229 5.50598 5.74256 5.83602 5.90911 5.96265 5.99685 6.12357 6.31563 6.34727 6.48086 6.54042 6.64597 6.67889 6.84940 6.94680 7.03293 7.08316 7.36493 7.44790 7.58300 7.76485 7.92952 8.55396 8.97309 9.58998 11.06057 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.025310 B = 0.003598 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.013214 B = 7780.162264 C = 8122.807173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.310 6.310 3 C 0.154 3.846 4 C -0.251 4.251 5 C 0.136 3.864 6 F -0.139 7.139 7 C -0.185 4.185 8 C -0.006 4.006 9 C 0.093 3.907 10 N -0.684 5.684 11 C 0.084 3.916 12 C 0.041 3.959 13 C -0.144 4.144 14 C -0.135 4.135 15 C -0.513 4.513 16 H 0.071 0.929 17 C 0.073 3.927 18 N -0.897 5.897 19 Si 0.888 3.112 20 H -0.287 1.287 21 H -0.309 1.309 22 H -0.248 1.248 23 C -0.138 4.138 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.101 0.899 27 H 0.137 0.863 28 H 0.135 0.865 29 H 0.085 0.915 30 H 0.041 0.959 31 H 0.339 0.661 32 H 0.066 0.934 33 H 0.024 0.976 34 H 0.027 0.973 35 H 0.053 0.947 36 H 0.039 0.961 37 H 0.045 0.955 38 H 0.030 0.970 39 H 0.043 0.957 40 H 0.263 0.737 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.887 -2.646 -9.406 23.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.223 6.223 3 C 0.108 3.892 4 C -0.271 4.271 5 C 0.117 3.883 6 F -0.118 7.118 7 C -0.205 4.205 8 C -0.006 4.006 9 C -0.036 4.036 10 N -0.316 5.316 11 C -0.044 4.044 12 C 0.039 3.961 13 C -0.202 4.202 14 C -0.192 4.192 15 C -0.551 4.551 16 H 0.089 0.911 17 C -0.129 4.129 18 N -0.534 5.534 19 Si 0.721 3.279 20 H -0.215 1.215 21 H -0.238 1.238 22 H -0.174 1.174 23 C -0.157 4.157 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.120 0.880 27 H 0.155 0.845 28 H 0.153 0.847 29 H 0.103 0.897 30 H 0.059 0.941 31 H 0.158 0.842 32 H 0.084 0.916 33 H 0.043 0.957 34 H 0.046 0.954 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.048 0.952 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -21.664 -3.451 -9.241 23.804 hybrid contribution -0.629 1.000 0.687 1.366 sum -22.292 -2.452 -8.554 24.002 Atomic orbital electron populations 1.23099 0.78257 1.04146 1.01473 1.86123 1.21497 1.26332 1.88396 1.18695 0.92048 0.83613 0.94841 1.21067 1.00888 0.91301 1.13832 1.17284 0.89089 0.81393 1.00581 1.91500 1.77356 1.49159 1.93753 1.20984 0.91637 1.00015 1.07837 1.19528 0.96040 0.91136 0.93926 1.20933 0.88569 1.01714 0.92338 1.60676 1.08929 1.51647 1.10333 1.22004 0.83929 0.99442 0.99041 1.18467 0.95814 0.91481 0.90291 1.22300 0.97541 0.99147 1.01175 1.22163 0.99140 0.99380 0.98515 1.20864 0.88688 1.51315 0.94245 0.91060 1.24981 0.94730 0.94226 0.98938 1.69964 1.10649 1.46693 1.26136 0.87253 0.80205 0.78212 0.82224 1.21480 1.23783 1.17413 1.20395 0.90850 0.98869 1.05617 0.92483 0.92563 0.88014 0.84509 0.84692 0.89688 0.94117 0.84231 0.91555 0.95738 0.95410 0.92777 0.94190 0.93583 0.95205 0.93750 0.92742 0.84168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.30 10.50 -19.41 -0.20 -3.50 16 3 C 0.15 1.77 6.69 -39.23 -0.26 1.50 16 4 C -0.25 -2.71 9.01 -39.37 -0.35 -3.06 16 5 C 0.14 1.61 7.30 -39.44 -0.29 1.32 16 6 F -0.14 -1.69 17.27 2.25 0.04 -1.65 16 7 C -0.19 -2.19 9.68 -39.49 -0.38 -2.57 16 8 C -0.01 -0.07 5.39 -104.65 -0.56 -0.63 16 9 C 0.09 1.21 5.81 -4.98 -0.03 1.18 16 10 N -0.68 -10.81 5.71 -115.06 -0.66 -11.47 16 11 C 0.08 1.59 4.57 -3.82 -0.02 1.57 16 12 C 0.04 0.91 0.57 -155.66 -0.09 0.82 16 13 C -0.14 -3.06 7.24 37.16 0.27 -2.79 16 14 C -0.14 -2.96 7.54 37.16 0.28 -2.68 16 15 C -0.51 -14.03 8.62 -34.44 -0.30 -14.33 16 16 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 17 C 0.07 2.09 5.32 -17.82 -0.09 1.99 16 18 N -0.90 -27.35 13.96 55.43 0.77 -26.58 16 19 Si 0.89 22.10 22.79 -169.99 -3.87 18.23 16 20 H -0.29 -7.14 7.10 56.52 0.40 -6.74 16 21 H -0.31 -7.82 7.11 56.52 0.40 -7.41 16 22 H -0.25 -5.74 4.65 56.52 0.26 -5.48 16 23 C -0.14 -1.67 9.64 -39.42 -0.38 -2.05 16 24 H 0.06 0.33 7.66 -51.93 -0.40 -0.06 16 25 H 0.06 0.30 7.67 -51.93 -0.40 -0.09 16 26 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.14 1.17 6.30 -52.49 -0.33 0.84 16 28 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 29 H 0.08 1.05 8.08 -51.93 -0.42 0.63 16 30 H 0.04 0.50 8.08 -51.93 -0.42 0.08 16 31 H 0.34 5.30 6.99 -39.29 -0.27 5.03 16 32 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.03 0.51 7.06 -51.93 -0.37 0.15 16 35 H 0.05 1.23 4.30 -51.93 -0.22 1.01 16 36 H 0.04 0.81 8.12 -51.93 -0.42 0.39 16 37 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.03 0.69 2.26 -51.93 -0.12 0.57 16 39 H 0.04 0.88 7.60 -51.93 -0.39 0.49 16 40 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 41 H 0.14 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 325.36 15.07 4.90 4.90 Total: -1.00 -30.33 325.36 -6.23 -36.56 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -5.99 Total: 2.07 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: -1.22 Total: -18.58 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: 0.12 Total: -38.04 kcal Atomic # 8 Polarization: -3.30 SS G_CDS: -0.20 Total: -3.50 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -3.87 Total: 18.23 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.33 -6.23 -36.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459684287.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.002 kcal (2) G-P(sol) polarization free energy of solvation -30.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds