Wall clock time and date at job start Tue Mar 31 2020 05:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35948 * 116.99852 * 2 1 4 4 C 1.38733 * 120.03043 * 0.02562 * 3 2 1 5 5 C 1.38127 * 119.97063 * 179.97438 * 4 3 2 6 6 C 1.38471 * 120.02876 * 359.97438 * 5 4 3 7 7 F 1.35110 * 119.96649 * 179.97438 * 6 5 4 8 8 C 1.38431 * 120.06507 * 359.79216 * 6 5 4 9 9 C 1.38176 * 120.02469 * 0.45899 * 8 6 5 10 10 C 1.50706 * 120.01372 * 179.79061 * 9 8 6 11 11 N 1.46895 * 109.46897 * 259.72747 * 10 9 8 12 12 C 1.46900 * 110.99659 * 179.97438 * 11 10 9 13 13 C 1.53004 * 109.47449 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.46874 * 300.00439 * 13 12 11 15 15 C 1.53004 * 109.46796 * 59.99896 * 13 12 11 16 16 C 1.50695 * 109.47292 * 179.97438 * 13 12 11 17 17 H 1.07997 * 119.99957 * 1.36381 * 16 13 12 18 18 C 1.37877 * 119.99964 * 181.36289 * 16 13 12 19 19 N 1.31515 * 120.00157 * 193.96481 * 18 16 13 20 20 Si 1.86804 * 119.99816 * 13.95938 * 18 16 13 21 21 H 1.48502 * 109.46858 * 84.56185 * 20 18 16 22 22 H 1.48500 * 109.47024 * 204.55918 * 20 18 16 23 23 H 1.48492 * 109.47275 * 324.56191 * 20 18 16 24 24 H 1.08995 * 109.47200 * 300.00503 * 1 2 3 25 25 H 1.09001 * 109.47159 * 60.00231 * 1 2 3 26 26 H 1.09002 * 109.46852 * 180.02562 * 1 2 3 27 27 H 1.07996 * 120.01169 * 0.02562 * 4 3 2 28 28 H 1.07999 * 119.98192 * 180.02562 * 5 4 3 29 29 H 1.07998 * 119.98719 * 180.22669 * 8 6 5 30 30 H 1.08992 * 109.46793 * 139.72285 * 10 9 8 31 31 H 1.09001 * 109.46710 * 19.72378 * 10 9 8 32 32 H 1.00895 * 111.00378 * 56.04569 * 11 10 9 33 33 H 1.09004 * 109.47472 * 299.99787 * 12 11 10 34 34 H 1.08999 * 109.47403 * 59.99573 * 12 11 10 35 35 H 1.08996 * 109.47655 * 69.31288 * 14 13 12 36 36 H 1.09006 * 109.47116 * 189.31394 * 14 13 12 37 37 H 1.09002 * 109.46994 * 309.30686 * 14 13 12 38 38 H 1.08997 * 109.47293 * 60.00433 * 15 13 12 39 39 H 1.08999 * 109.47086 * 180.02562 * 15 13 12 40 40 H 1.08997 * 109.46936 * 300.00399 * 15 13 12 41 41 H 0.96996 * 119.99843 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2912 2.3752 0.0005 5 6 1.9195 3.6053 0.0011 6 6 3.3023 3.6771 0.0016 7 9 3.9156 4.8809 0.0016 8 6 4.0570 2.5166 0.0060 9 6 3.4310 1.2847 0.0002 10 6 4.2529 0.0215 0.0001 11 7 4.3183 -0.5200 -1.3638 12 6 5.1140 -1.7543 -1.4025 13 6 5.1587 -2.2876 -2.8359 14 6 3.7359 -2.5826 -3.3148 15 6 5.7976 -1.2401 -3.7500 16 6 5.9754 -3.5534 -2.8757 17 1 6.3999 -3.9510 -1.9657 18 6 6.1807 -4.2040 -4.0738 19 7 6.6476 -5.4334 -4.0830 20 14 5.7956 -3.3391 -5.6842 21 1 6.9571 -2.5073 -6.0894 22 1 5.5204 -4.3508 -6.7359 23 1 4.6033 -2.4718 -5.5075 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.2126 2.3195 0.0014 28 1 1.3319 4.5115 0.0019 29 1 5.1355 2.5740 0.0101 30 1 3.7912 -0.7123 0.6607 31 1 5.2605 0.2436 0.3516 32 1 4.6834 0.1655 -2.0079 33 1 6.1275 -1.5441 -1.0609 34 1 4.6587 -2.5007 -0.7516 35 1 3.1944 -1.6456 -3.4443 36 1 3.7755 -3.1138 -4.2659 37 1 3.2242 -3.1989 -2.5756 38 1 6.8112 -1.0298 -3.4088 39 1 5.8290 -1.6198 -4.7712 40 1 5.2072 -0.3243 -3.7212 41 1 6.7916 -5.8912 -4.9259 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459684411.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:58 Heat of formation + Delta-G solvation = -42.131006 kcal Electronic energy + Delta-G solvation = -22258.526167 eV Core-core repulsion = 18860.997625 eV Total energy + Delta-G solvation = -3397.528541 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.90566 -40.31071 -37.57569 -37.00719 -34.34979 -31.92304 -30.82550 -29.81488 -27.39459 -26.24221 -26.05936 -24.97786 -23.37394 -22.41422 -21.43375 -18.78884 -18.13867 -17.23191 -17.02564 -16.04049 -15.90784 -15.51839 -15.46126 -14.84406 -14.76878 -14.62663 -13.94690 -13.68712 -13.37670 -13.04771 -12.82611 -12.67633 -12.43526 -12.35894 -11.99412 -11.95993 -11.81628 -11.61642 -11.02334 -10.96023 -10.77068 -10.27164 -10.02697 -9.96894 -9.77450 -9.22639 -8.91945 -8.52784 -8.34190 -8.14045 -7.80391 -6.04970 -4.00263 0.97649 1.11075 3.19727 3.34146 3.39978 3.43648 3.47272 4.14736 4.45500 4.47007 4.54744 4.84871 4.89149 4.99725 5.03710 5.16481 5.28436 5.36563 5.42535 5.50763 5.61363 5.92597 5.94550 5.96338 6.04367 6.17404 6.25792 6.31024 6.52224 6.58514 6.63184 6.81754 6.85728 6.98901 7.11380 7.27411 7.44672 7.53759 7.66154 7.88103 7.97288 8.58682 9.00005 9.61495 11.08538 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.022806 B = 0.004197 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.447560 B = 6670.400199 C = 7182.486339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.292 6.292 3 C 0.145 3.855 4 C -0.188 4.188 5 C -0.116 4.116 6 C 0.054 3.946 7 F -0.144 7.144 8 C -0.110 4.110 9 C -0.082 4.082 10 C 0.105 3.895 11 N -0.680 5.680 12 C 0.086 3.914 13 C 0.041 3.959 14 C -0.125 4.125 15 C -0.149 4.149 16 C -0.511 4.511 17 H 0.071 0.929 18 C 0.073 3.927 19 N -0.898 5.898 20 Si 0.884 3.116 21 H -0.289 1.289 22 H -0.307 1.307 23 H -0.246 1.246 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.102 0.898 27 H 0.136 0.864 28 H 0.134 0.866 29 H 0.139 0.861 30 H 0.084 0.916 31 H 0.034 0.966 32 H 0.335 0.665 33 H 0.021 0.979 34 H 0.066 0.934 35 H 0.031 0.969 36 H 0.042 0.958 37 H 0.040 0.960 38 H 0.045 0.955 39 H 0.039 0.961 40 H 0.033 0.967 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.752 16.783 9.100 22.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.204 6.204 3 C 0.098 3.902 4 C -0.207 4.207 5 C -0.135 4.135 6 C 0.035 3.965 7 F -0.123 7.123 8 C -0.130 4.130 9 C -0.083 4.083 10 C -0.024 4.024 11 N -0.311 5.311 12 C -0.042 4.042 13 C 0.040 3.960 14 C -0.182 4.182 15 C -0.206 4.206 16 C -0.549 4.549 17 H 0.089 0.911 18 C -0.128 4.128 19 N -0.535 5.535 20 Si 0.717 3.283 21 H -0.217 1.217 22 H -0.236 1.236 23 H -0.172 1.172 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.120 0.880 27 H 0.154 0.846 28 H 0.152 0.848 29 H 0.157 0.843 30 H 0.103 0.897 31 H 0.052 0.948 32 H 0.153 0.847 33 H 0.039 0.961 34 H 0.084 0.916 35 H 0.051 0.949 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.052 0.948 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.188 16.106 9.061 22.137 hybrid contribution 0.694 1.149 -0.893 1.612 sum -11.494 17.255 8.168 22.284 Atomic orbital electron populations 1.23090 0.78764 1.04251 1.00869 1.86270 1.20777 1.25647 1.87662 1.18827 0.91686 0.84535 0.95126 1.21075 1.00344 0.91398 1.07846 1.20852 0.92634 0.98596 1.01420 1.17485 0.90823 0.80480 1.07728 1.91480 1.83363 1.43010 1.94466 1.20922 1.00663 0.90198 1.01169 1.19129 0.90997 0.95076 1.03094 1.20706 0.96208 0.92308 0.93149 1.60619 1.57728 1.07774 1.05014 1.21967 0.93312 0.89658 0.99295 1.18476 0.93538 0.93894 0.90136 1.22049 0.97374 0.98871 0.99949 1.22367 0.99916 0.98380 0.99956 1.20868 1.32395 1.06146 0.95489 0.91083 1.24969 0.94552 0.94187 0.99110 1.69965 1.46247 1.10591 1.26698 0.87315 0.79509 0.78297 0.83169 1.21665 1.23632 1.17156 0.93011 0.92668 0.88012 0.84614 0.84802 0.84278 0.89749 0.94771 0.84657 0.96101 0.91564 0.94944 0.93924 0.94084 0.93567 0.94263 0.94761 0.92789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.29 -3.74 9.73 -19.58 -0.19 -3.93 16 3 C 0.15 1.81 6.66 -39.23 -0.26 1.54 16 4 C -0.19 -1.91 9.04 -39.44 -0.36 -2.27 16 5 C -0.12 -1.18 10.02 -39.54 -0.40 -1.58 16 6 C 0.05 0.63 7.30 -39.42 -0.29 0.34 16 7 F -0.14 -1.76 17.27 2.25 0.04 -1.72 16 8 C -0.11 -1.31 9.64 -39.53 -0.38 -1.69 16 9 C -0.08 -1.06 5.40 -104.48 -0.56 -1.62 16 10 C 0.11 1.49 5.48 -4.98 -0.03 1.47 16 11 N -0.68 -11.39 5.89 -115.06 -0.68 -12.07 16 12 C 0.09 1.69 4.57 -3.82 -0.02 1.68 16 13 C 0.04 0.93 0.57 -155.66 -0.09 0.84 16 14 C -0.12 -2.80 7.55 37.16 0.28 -2.52 16 15 C -0.15 -3.21 7.36 37.16 0.27 -2.94 16 16 C -0.51 -14.14 8.62 -34.44 -0.30 -14.44 16 17 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 18 C 0.07 2.11 5.32 -17.82 -0.09 2.02 16 19 N -0.90 -27.54 13.96 55.43 0.77 -26.76 16 20 Si 0.88 22.13 22.79 -169.99 -3.87 18.25 16 21 H -0.29 -7.18 7.10 56.52 0.40 -6.78 16 22 H -0.31 -7.83 7.11 56.52 0.40 -7.43 16 23 H -0.25 -5.74 4.65 56.52 0.26 -5.48 16 24 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 25 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 26 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.14 1.03 6.30 -52.49 -0.33 0.70 16 28 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 29 H 0.14 1.47 8.03 -52.49 -0.42 1.05 16 30 H 0.08 1.24 7.85 -51.93 -0.41 0.83 16 31 H 0.03 0.45 8.00 -51.93 -0.42 0.04 16 32 H 0.33 5.49 6.76 -39.29 -0.27 5.23 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 35 H 0.03 0.67 7.88 -51.93 -0.41 0.26 16 36 H 0.04 1.00 4.30 -51.93 -0.22 0.78 16 37 H 0.04 0.91 8.12 -51.93 -0.42 0.49 16 38 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.04 0.90 2.25 -51.93 -0.12 0.78 16 40 H 0.03 0.64 6.57 -51.93 -0.34 0.30 16 41 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 324.14 15.07 4.88 4.88 Total: -1.00 -30.96 324.14 -6.23 -37.18 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -5.96 Total: 2.13 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: -1.23 Total: -17.96 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.10 Total: -38.83 kcal Atomic # 8 Polarization: -3.74 SS G_CDS: -0.19 Total: -3.93 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -3.87 Total: 18.25 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.96 -6.23 -37.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459684411.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.949 kcal (2) G-P(sol) polarization free energy of solvation -30.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds