Wall clock time and date at job start Tue Mar 31 2020 05:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35948 * 116.99852 * 2 1 4 4 C 1.38733 * 120.03043 * 0.02562 * 3 2 1 5 5 C 1.38127 * 119.97063 * 179.97438 * 4 3 2 6 6 C 1.38471 * 120.02876 * 359.97438 * 5 4 3 7 7 F 1.35110 * 119.96649 * 179.97438 * 6 5 4 8 8 C 1.38431 * 120.06507 * 359.79216 * 6 5 4 9 9 C 1.38176 * 120.02469 * 0.45899 * 8 6 5 10 10 C 1.50706 * 120.01372 * 179.79061 * 9 8 6 11 11 N 1.46895 * 109.46897 * 259.72747 * 10 9 8 12 12 C 1.46900 * 110.99659 * 179.97438 * 11 10 9 13 13 C 1.53004 * 109.47449 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.46874 * 300.00439 * 13 12 11 15 15 C 1.53004 * 109.46796 * 59.99896 * 13 12 11 16 16 C 1.50695 * 109.47292 * 179.97438 * 13 12 11 17 17 H 1.07997 * 119.99957 * 1.36381 * 16 13 12 18 18 C 1.37877 * 119.99964 * 181.36289 * 16 13 12 19 19 N 1.31515 * 120.00157 * 193.96481 * 18 16 13 20 20 Si 1.86804 * 119.99816 * 13.95938 * 18 16 13 21 21 H 1.48502 * 109.46858 * 84.56185 * 20 18 16 22 22 H 1.48500 * 109.47024 * 204.55918 * 20 18 16 23 23 H 1.48492 * 109.47275 * 324.56191 * 20 18 16 24 24 H 1.08995 * 109.47200 * 300.00503 * 1 2 3 25 25 H 1.09001 * 109.47159 * 60.00231 * 1 2 3 26 26 H 1.09002 * 109.46852 * 180.02562 * 1 2 3 27 27 H 1.07996 * 120.01169 * 0.02562 * 4 3 2 28 28 H 1.07999 * 119.98192 * 180.02562 * 5 4 3 29 29 H 1.07998 * 119.98719 * 180.22669 * 8 6 5 30 30 H 1.08992 * 109.46793 * 139.72285 * 10 9 8 31 31 H 1.09001 * 109.46710 * 19.72378 * 10 9 8 32 32 H 1.00895 * 111.00378 * 56.04569 * 11 10 9 33 33 H 1.09004 * 109.47472 * 299.99787 * 12 11 10 34 34 H 1.08999 * 109.47403 * 59.99573 * 12 11 10 35 35 H 1.08996 * 109.47655 * 69.31288 * 14 13 12 36 36 H 1.09006 * 109.47116 * 189.31394 * 14 13 12 37 37 H 1.09002 * 109.46994 * 309.30686 * 14 13 12 38 38 H 1.08997 * 109.47293 * 60.00433 * 15 13 12 39 39 H 1.08999 * 109.47086 * 180.02562 * 15 13 12 40 40 H 1.08997 * 109.46936 * 300.00399 * 15 13 12 41 41 H 0.96996 * 119.99843 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2912 2.3752 0.0005 5 6 1.9195 3.6053 0.0011 6 6 3.3023 3.6771 0.0016 7 9 3.9156 4.8809 0.0016 8 6 4.0570 2.5166 0.0060 9 6 3.4310 1.2847 0.0002 10 6 4.2529 0.0215 0.0001 11 7 4.3183 -0.5200 -1.3638 12 6 5.1140 -1.7543 -1.4025 13 6 5.1587 -2.2876 -2.8359 14 6 3.7359 -2.5826 -3.3148 15 6 5.7976 -1.2401 -3.7500 16 6 5.9754 -3.5534 -2.8757 17 1 6.3999 -3.9510 -1.9657 18 6 6.1807 -4.2040 -4.0738 19 7 6.6476 -5.4334 -4.0830 20 14 5.7956 -3.3391 -5.6842 21 1 6.9571 -2.5073 -6.0894 22 1 5.5204 -4.3508 -6.7359 23 1 4.6033 -2.4718 -5.5075 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.2126 2.3195 0.0014 28 1 1.3319 4.5115 0.0019 29 1 5.1355 2.5740 0.0101 30 1 3.7912 -0.7123 0.6607 31 1 5.2605 0.2436 0.3516 32 1 4.6834 0.1655 -2.0079 33 1 6.1275 -1.5441 -1.0609 34 1 4.6587 -2.5007 -0.7516 35 1 3.1944 -1.6456 -3.4443 36 1 3.7755 -3.1138 -4.2659 37 1 3.2242 -3.1989 -2.5756 38 1 6.8112 -1.0298 -3.4088 39 1 5.8290 -1.6198 -4.7712 40 1 5.2072 -0.3243 -3.7212 41 1 6.7916 -5.8912 -4.9259 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459684411.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:57 Heat of formation + Delta-G solvation = -62.686906 kcal Electronic energy + Delta-G solvation = -22259.417537 eV Core-core repulsion = 18860.997625 eV Total energy + Delta-G solvation = -3398.419912 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.78937 -41.16435 -38.95801 -38.13325 -35.78220 -33.80411 -32.08263 -30.66618 -28.14968 -27.94440 -27.35220 -27.00444 -24.83975 -23.24450 -22.41173 -20.60856 -18.98501 -18.23472 -18.00794 -17.87892 -17.31406 -16.76685 -16.29570 -16.25420 -15.64036 -15.53054 -15.25781 -15.18020 -14.78534 -14.42448 -14.27627 -13.96903 -13.81779 -13.69796 -13.59617 -13.18867 -12.87904 -12.69398 -12.47382 -12.28775 -11.98121 -11.86492 -11.77577 -11.60987 -11.57388 -10.93477 -10.55120 -10.32489 -10.06653 -9.19320 -8.99251 -8.27559 -6.26306 0.13949 0.25135 1.36178 1.39978 1.50473 2.37255 2.44012 2.53866 3.09526 3.26192 3.54006 3.69693 3.78077 4.10505 4.18123 4.25873 4.41019 4.43622 4.48207 4.48345 4.56007 4.58642 4.76394 4.81387 4.83899 4.90906 4.94844 5.05272 5.13746 5.14273 5.14619 5.18199 5.33369 5.36750 5.62275 5.75859 5.77466 5.89069 6.17877 6.37146 6.50077 6.59994 6.80498 7.38931 8.89732 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.022806 B = 0.004197 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.447560 B = 6670.400199 C = 7182.486339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.320 6.320 3 C 0.135 3.865 4 C -0.182 4.182 5 C -0.107 4.107 6 C 0.039 3.961 7 F -0.150 7.150 8 C -0.111 4.111 9 C -0.101 4.101 10 C 0.110 3.890 11 N -0.676 5.676 12 C 0.100 3.900 13 C 0.035 3.965 14 C -0.118 4.118 15 C -0.147 4.147 16 C -0.512 4.512 17 H 0.029 0.971 18 C 0.017 3.983 19 N -0.948 5.948 20 Si 0.942 3.058 21 H -0.283 1.283 22 H -0.316 1.316 23 H -0.214 1.214 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.107 0.893 27 H 0.164 0.836 28 H 0.160 0.840 29 H 0.146 0.854 30 H 0.075 0.925 31 H 0.042 0.958 32 H 0.340 0.660 33 H 0.016 0.984 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.030 0.970 37 H 0.033 0.967 38 H 0.046 0.954 39 H 0.029 0.971 40 H 0.067 0.933 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.797 19.731 8.716 25.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.233 6.233 3 C 0.088 3.912 4 C -0.200 4.200 5 C -0.126 4.126 6 C 0.020 3.980 7 F -0.129 7.129 8 C -0.131 4.131 9 C -0.102 4.102 10 C -0.018 4.018 11 N -0.308 5.308 12 C -0.029 4.029 13 C 0.034 3.966 14 C -0.175 4.175 15 C -0.204 4.204 16 C -0.550 4.550 17 H 0.048 0.952 18 C -0.180 4.180 19 N -0.589 5.589 20 Si 0.772 3.228 21 H -0.211 1.211 22 H -0.245 1.245 23 H -0.138 1.138 24 H 0.090 0.910 25 H 0.084 0.916 26 H 0.125 0.875 27 H 0.182 0.818 28 H 0.178 0.822 29 H 0.164 0.836 30 H 0.093 0.907 31 H 0.061 0.939 32 H 0.159 0.841 33 H 0.034 0.966 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.048 0.952 37 H 0.052 0.948 38 H 0.065 0.935 39 H 0.047 0.953 40 H 0.086 0.914 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.252 19.090 8.699 25.361 hybrid contribution 1.291 0.218 -0.627 1.452 sum -12.960 19.308 8.072 24.616 Atomic orbital electron populations 1.23346 0.76781 1.05262 1.02382 1.86228 1.23019 1.26255 1.87759 1.19034 0.91738 0.85240 0.95216 1.21355 1.01666 0.90452 1.06547 1.21182 0.92180 0.99688 0.99564 1.17665 0.91596 0.80169 1.08587 1.91467 1.83585 1.43222 1.94601 1.20984 1.01172 0.90058 1.00843 1.19003 0.91402 0.94507 1.05278 1.20626 0.96967 0.92873 0.91368 1.60516 1.56610 1.06884 1.06813 1.21623 0.93454 0.90873 0.96968 1.18471 0.93111 0.92386 0.92611 1.21944 0.96972 0.99686 0.98935 1.22284 1.00521 0.99045 0.98512 1.21204 1.32053 1.07907 0.93833 0.95228 1.25789 0.94733 0.94596 1.02853 1.70112 1.48672 1.12519 1.27553 0.86373 0.80704 0.77416 0.78302 1.21069 1.24528 1.13810 0.90963 0.91565 0.87453 0.81814 0.82199 0.83628 0.90711 0.93950 0.84113 0.96620 0.93076 0.92593 0.95151 0.94803 0.93493 0.95274 0.91385 0.92868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.32 -7.61 9.73 -92.96 -0.90 -8.51 16 3 C 0.13 3.04 6.66 22.49 0.15 3.19 16 4 C -0.18 -3.08 9.04 22.36 0.20 -2.88 16 5 C -0.11 -1.82 10.02 22.30 0.22 -1.60 16 6 C 0.04 0.82 7.30 22.37 0.16 0.98 16 7 F -0.15 -3.35 17.27 44.97 0.78 -2.58 16 8 C -0.11 -2.44 9.64 22.30 0.22 -2.22 16 9 C -0.10 -2.43 5.40 -19.77 -0.11 -2.54 16 10 C 0.11 3.01 5.48 85.56 0.47 3.48 16 11 N -0.68 -21.53 5.89 -517.93 -3.05 -24.58 16 12 C 0.10 3.90 4.57 86.30 0.39 4.29 16 13 C 0.04 1.58 0.57 -52.93 -0.03 1.55 16 14 C -0.12 -5.08 7.55 71.98 0.54 -4.53 16 15 C -0.15 -5.93 7.36 71.98 0.53 -5.40 16 16 C -0.51 -28.92 8.62 25.60 0.22 -28.70 16 17 H 0.03 1.86 7.99 -2.91 -0.02 1.84 16 18 C 0.02 1.00 5.32 84.65 0.45 1.45 16 19 N -0.95 -60.08 13.96 21.45 0.30 -59.78 16 20 Si 0.94 45.32 22.79 68.60 1.56 46.88 16 21 H -0.28 -13.29 7.10 99.48 0.71 -12.58 16 22 H -0.32 -15.52 7.11 99.48 0.71 -14.81 16 23 H -0.21 -9.18 4.65 99.48 0.46 -8.71 16 24 H 0.07 0.72 7.66 -2.39 -0.02 0.70 16 25 H 0.07 0.79 7.66 -2.39 -0.02 0.77 16 26 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.16 1.77 6.30 -2.91 -0.02 1.75 16 28 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 29 H 0.15 2.86 8.03 -2.91 -0.02 2.84 16 30 H 0.07 2.17 7.85 -2.39 -0.02 2.15 16 31 H 0.04 1.08 8.00 -2.39 -0.02 1.06 16 32 H 0.34 10.24 6.76 -89.70 -0.61 9.63 16 33 H 0.02 0.62 8.14 -2.38 -0.02 0.60 16 34 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.06 2.13 7.88 -2.39 -0.02 2.11 16 36 H 0.03 1.36 4.30 -2.38 -0.01 1.35 16 37 H 0.03 1.46 8.12 -2.39 -0.02 1.44 16 38 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.03 1.24 2.25 -2.39 -0.01 1.23 16 40 H 0.07 2.28 6.57 -2.39 -0.02 2.27 16 41 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -67.87 324.14 3.41 -64.46 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 0.19 Total: 15.69 kcal Atomic # 6 Polarization: -36.12 SS G_CDS: 4.54 Total: -31.58 kcal Atomic # 7 Polarization: -81.61 SS G_CDS: -2.75 Total: -84.36 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: -0.90 Total: -8.51 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.78 Total: -2.58 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.56 Total: 46.88 kcal Total: -67.87 3.41 -64.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459684411.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.769 kcal (2) G-P(sol) polarization free energy of solvation -67.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds