Wall clock time and date at job start Tue Mar 31 2020 05:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35948 * 117.00499 * 2 1 4 4 C 1.38664 * 120.06477 * 359.72167 * 3 2 1 5 5 C 1.38176 * 119.97332 * 180.28026 * 4 3 2 6 6 C 1.38263 * 120.09586 * 359.97378 * 5 4 3 7 7 C 1.50702 * 119.93682 * 180.02562 * 6 5 4 8 8 N 1.46898 * 109.47009 * 270.02121 * 7 6 5 9 9 C 1.46896 * 110.99970 * 179.97438 * 8 7 6 10 10 C 1.52999 * 109.47293 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.47265 * 300.00536 * 10 9 8 12 12 C 1.52999 * 109.47095 * 60.00251 * 10 9 8 13 13 C 1.50696 * 109.47227 * 180.02562 * 10 9 8 14 14 H 1.08002 * 120.00371 * 359.97438 * 13 10 9 15 15 C 1.37886 * 120.00102 * 180.02562 * 13 10 9 16 16 N 1.31513 * 119.99710 * 359.97438 * 15 13 10 17 17 Si 1.86796 * 119.99908 * 180.02562 * 15 13 10 18 18 H 1.48493 * 109.47693 * 59.99433 * 17 15 13 19 19 H 1.48504 * 109.46877 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47133 * 299.99083 * 17 15 13 21 21 C 1.38254 * 120.12337 * 0.04707 * 6 5 4 22 22 C 1.38326 * 120.03416 * 359.95854 * 21 6 5 23 23 F 1.35098 * 120.05006 * 179.97438 * 22 21 6 24 24 H 1.09001 * 109.46836 * 300.00713 * 1 2 3 25 25 H 1.09001 * 109.46915 * 60.00028 * 1 2 3 26 26 H 1.08996 * 109.47572 * 179.97438 * 1 2 3 27 27 H 1.08008 * 120.01117 * 0.25210 * 4 3 2 28 28 H 1.07999 * 119.95322 * 179.97438 * 5 4 3 29 29 H 1.08994 * 109.47166 * 30.02267 * 7 6 5 30 30 H 1.08994 * 109.46843 * 150.02522 * 7 6 5 31 31 H 1.00900 * 110.99938 * 56.04850 * 8 7 6 32 32 H 1.08997 * 109.47560 * 300.00424 * 9 8 7 33 33 H 1.09005 * 109.46905 * 60.00664 * 9 8 7 34 34 H 1.09004 * 109.47455 * 59.99912 * 11 10 9 35 35 H 1.09000 * 109.47543 * 180.02562 * 11 10 9 36 36 H 1.09005 * 109.47255 * 299.99543 * 11 10 9 37 37 H 1.09002 * 109.47176 * 59.99967 * 12 10 9 38 38 H 1.09001 * 109.47474 * 179.97438 * 12 10 9 39 39 H 1.09000 * 109.47483 * 300.00653 * 12 10 9 40 40 H 0.96993 * 119.99958 * 180.02562 * 16 15 13 41 41 H 1.08004 * 119.98065 * 179.97438 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2925 2.3751 -0.0058 5 6 1.9219 3.6052 -0.0117 6 6 3.3026 3.6775 -0.0112 7 6 3.9853 5.0210 -0.0170 8 7 4.2075 5.4513 -1.4038 9 6 4.8722 6.7605 -1.4487 10 6 5.0856 7.1745 -2.9061 11 6 5.9599 6.1342 -3.6090 12 6 3.7322 7.2653 -3.6138 13 6 5.7681 8.5173 -2.9521 14 1 6.0237 9.0250 -2.0337 15 6 6.0652 9.0984 -4.1667 16 7 5.7535 8.4805 -5.2850 17 14 6.9118 10.7625 -4.2237 18 1 8.2257 10.6733 -3.5376 19 1 7.1188 11.1644 -5.6382 20 1 6.0643 11.7727 -3.5406 21 6 4.0580 2.5196 -0.0058 22 6 3.4334 1.2855 -0.0001 23 9 4.1713 0.1538 0.0047 24 1 -0.3633 0.5140 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 0.2138 2.3201 -0.0063 28 1 1.3344 4.5114 -0.0166 29 1 3.3564 5.7503 0.4934 30 1 4.9431 4.9440 0.4974 31 1 3.3409 5.4683 -1.9204 32 1 4.2491 7.5018 -0.9483 33 1 5.8363 6.6960 -0.9441 34 1 5.4666 5.1628 -3.5758 35 1 6.1123 6.4294 -4.6472 36 1 6.9242 6.0696 -3.1048 37 1 3.1092 8.0064 -3.1131 38 1 3.8841 7.5607 -4.6520 39 1 3.2388 6.2939 -3.5805 40 1 5.9629 8.8891 -6.1394 41 1 5.1365 2.5788 -0.0058 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459690779.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:37 Heat of formation + Delta-G solvation = -62.610061 kcal Electronic energy + Delta-G solvation = -21724.532043 eV Core-core repulsion = 18326.115463 eV Total energy + Delta-G solvation = -3398.416580 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.77266 -40.16711 -38.11441 -36.66773 -33.96688 -31.43404 -30.81938 -29.83409 -27.74577 -25.56656 -25.38650 -25.12448 -23.09406 -22.83306 -21.22677 -18.52394 -18.40427 -17.06631 -16.79998 -16.28364 -15.91399 -15.30863 -15.14163 -14.92885 -14.55825 -14.34904 -14.17315 -13.86948 -13.36438 -12.87022 -12.59504 -12.32228 -12.27931 -12.09107 -11.81831 -11.51812 -11.23871 -11.15751 -11.08082 -10.94845 -10.64028 -10.59401 -10.17746 -10.05512 -9.38379 -9.12123 -8.98291 -8.63826 -8.29644 -8.23591 -7.72412 -5.90941 -4.01618 1.06137 1.14108 2.94666 3.32678 3.37703 3.39948 3.45390 4.13801 4.43982 4.54517 4.64597 4.78923 4.86217 4.99108 5.12081 5.18281 5.18972 5.34407 5.42426 5.54249 5.76891 5.84211 6.00084 6.07524 6.30635 6.35784 6.50775 6.54948 6.71200 6.88373 7.07312 7.11052 7.16461 7.39046 7.46680 7.69844 7.75959 7.83024 7.93740 8.21173 8.34909 8.55717 8.99738 9.63372 11.09554 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.035543 B = 0.003116 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.581436 B = 8983.206663 C = 9114.336473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.313 6.313 3 C 0.087 3.913 4 C -0.182 4.182 5 C -0.085 4.085 6 C -0.078 4.078 7 C 0.097 3.903 8 N -0.681 5.681 9 C 0.074 3.926 10 C 0.069 3.931 11 C -0.120 4.120 12 C -0.132 4.132 13 C -0.508 4.508 14 H 0.051 0.949 15 C 0.065 3.935 16 N -0.885 5.885 17 Si 0.889 3.111 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.279 1.279 21 C -0.093 4.093 22 C 0.067 3.933 23 F -0.135 7.135 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.100 0.900 27 H 0.135 0.865 28 H 0.130 0.870 29 H 0.035 0.965 30 H 0.078 0.922 31 H 0.339 0.661 32 H 0.014 0.986 33 H 0.057 0.943 34 H 0.020 0.980 35 H 0.074 0.926 36 H 0.018 0.982 37 H 0.018 0.982 38 H 0.083 0.917 39 H 0.011 0.989 40 H 0.259 0.741 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.582 -12.953 10.908 19.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.226 6.226 3 C 0.041 3.959 4 C -0.200 4.200 5 C -0.104 4.104 6 C -0.079 4.079 7 C -0.032 4.032 8 N -0.313 5.313 9 C -0.054 4.054 10 C 0.069 3.931 11 C -0.177 4.177 12 C -0.190 4.190 13 C -0.547 4.547 14 H 0.070 0.930 15 C -0.136 4.136 16 N -0.523 5.523 17 Si 0.717 3.283 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.205 1.205 21 C -0.113 4.113 22 C 0.048 3.952 23 F -0.114 7.114 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.119 0.881 27 H 0.153 0.847 28 H 0.148 0.852 29 H 0.053 0.947 30 H 0.096 0.904 31 H 0.158 0.842 32 H 0.032 0.968 33 H 0.076 0.924 34 H 0.039 0.961 35 H 0.092 0.908 36 H 0.037 0.963 37 H 0.038 0.962 38 H 0.102 0.898 39 H 0.029 0.971 40 H 0.069 0.931 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -9.864 -13.503 10.635 19.817 hybrid contribution -0.421 1.478 0.200 1.549 sum -10.285 -12.025 10.835 19.178 Atomic orbital electron populations 1.23086 0.78144 1.04064 1.01485 1.86117 1.21553 1.26014 1.88959 1.18978 0.90812 0.85504 1.00588 1.21061 1.00062 0.91433 1.07484 1.20945 0.94103 0.97242 0.98099 1.19707 0.92962 0.95214 1.00018 1.20861 0.99147 0.90819 0.92384 1.60677 1.29238 1.31512 1.09907 1.22191 0.96646 0.85792 1.00732 1.18081 0.92925 0.94067 0.88037 1.21644 0.97268 0.95996 1.02824 1.21838 0.96842 0.95964 1.04379 1.21077 1.38396 1.03057 0.92172 0.93037 1.24886 0.95646 0.97263 0.95757 1.69822 1.47420 1.37873 0.97217 0.86719 0.80126 0.84604 0.76844 1.20391 1.21366 1.20486 1.20936 1.01334 0.89400 0.99598 1.16973 0.85858 0.83014 1.09402 1.91487 1.76460 1.49061 1.94354 0.92559 0.92413 0.88128 0.84685 0.85205 0.94726 0.90351 0.84207 0.96762 0.92402 0.96073 0.90761 0.96293 0.96247 0.89818 0.97051 0.93117 0.83759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.71 10.36 -19.58 -0.20 -3.91 16 3 C 0.09 1.10 6.69 -39.17 -0.26 0.83 16 4 C -0.18 -1.93 9.04 -39.45 -0.36 -2.29 16 5 C -0.09 -0.96 9.69 -39.60 -0.38 -1.34 16 6 C -0.08 -1.00 5.39 -104.61 -0.56 -1.57 16 7 C 0.10 1.35 5.81 -4.98 -0.03 1.32 16 8 N -0.68 -11.75 5.70 -115.07 -0.66 -12.41 16 9 C 0.07 1.51 4.59 -3.83 -0.02 1.49 16 10 C 0.07 1.66 0.57 -155.66 -0.09 1.57 16 11 C -0.12 -2.92 8.09 37.16 0.30 -2.61 16 12 C -0.13 -3.09 7.92 37.16 0.29 -2.80 16 13 C -0.51 -13.58 8.01 -34.44 -0.28 -13.85 16 14 H 0.05 1.37 7.74 -52.49 -0.41 0.96 16 15 C 0.07 1.77 5.15 -17.82 -0.09 1.68 16 16 N -0.88 -24.46 9.35 55.43 0.52 -23.94 16 17 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 C -0.09 -1.23 9.67 -39.54 -0.38 -1.62 16 22 C 0.07 0.93 7.31 -39.30 -0.29 0.64 16 23 F -0.13 -2.00 17.11 2.25 0.04 -1.96 16 24 H 0.06 0.32 7.67 -51.93 -0.40 -0.08 16 25 H 0.06 0.36 7.65 -51.93 -0.40 -0.04 16 26 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.14 1.06 6.30 -52.48 -0.33 0.73 16 28 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 29 H 0.03 0.45 8.08 -51.93 -0.42 0.03 16 30 H 0.08 1.06 8.08 -51.93 -0.42 0.64 16 31 H 0.34 5.83 6.76 -39.29 -0.27 5.56 16 32 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.02 0.47 7.60 -51.93 -0.39 0.08 16 35 H 0.07 1.99 6.07 -51.93 -0.32 1.67 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.08 2.18 6.07 -51.93 -0.32 1.87 16 39 H 0.01 0.23 6.57 -51.93 -0.34 -0.12 16 40 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 41 H 0.14 1.80 8.06 -52.48 -0.42 1.38 16 LS Contribution 334.88 15.07 5.05 5.05 Total: -1.00 -28.88 334.88 -7.53 -36.41 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -6.10 Total: 2.13 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: -1.15 Total: -17.36 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: -0.14 Total: -36.35 kcal Atomic # 8 Polarization: -3.71 SS G_CDS: -0.20 Total: -3.91 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.88 -7.53 -36.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459690779.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.198 kcal (2) G-P(sol) polarization free energy of solvation -28.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds