Wall clock time and date at job start Tue Mar 31 2020 05:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35948 * 117.00499 * 2 1 4 4 C 1.38664 * 120.06477 * 359.72167 * 3 2 1 5 5 C 1.38176 * 119.97332 * 180.28026 * 4 3 2 6 6 C 1.38263 * 120.09586 * 359.97378 * 5 4 3 7 7 C 1.50702 * 119.93682 * 180.02562 * 6 5 4 8 8 N 1.46898 * 109.47009 * 270.02121 * 7 6 5 9 9 C 1.46896 * 110.99970 * 179.97438 * 8 7 6 10 10 C 1.52999 * 109.47293 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.47265 * 300.00536 * 10 9 8 12 12 C 1.52999 * 109.47095 * 60.00251 * 10 9 8 13 13 C 1.50696 * 109.47227 * 180.02562 * 10 9 8 14 14 H 1.08002 * 120.00371 * 359.97438 * 13 10 9 15 15 C 1.37886 * 120.00102 * 180.02562 * 13 10 9 16 16 N 1.31513 * 119.99710 * 359.97438 * 15 13 10 17 17 Si 1.86796 * 119.99908 * 180.02562 * 15 13 10 18 18 H 1.48493 * 109.47693 * 59.99433 * 17 15 13 19 19 H 1.48504 * 109.46877 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47133 * 299.99083 * 17 15 13 21 21 C 1.38254 * 120.12337 * 0.04707 * 6 5 4 22 22 C 1.38326 * 120.03416 * 359.95854 * 21 6 5 23 23 F 1.35098 * 120.05006 * 179.97438 * 22 21 6 24 24 H 1.09001 * 109.46836 * 300.00713 * 1 2 3 25 25 H 1.09001 * 109.46915 * 60.00028 * 1 2 3 26 26 H 1.08996 * 109.47572 * 179.97438 * 1 2 3 27 27 H 1.08008 * 120.01117 * 0.25210 * 4 3 2 28 28 H 1.07999 * 119.95322 * 179.97438 * 5 4 3 29 29 H 1.08994 * 109.47166 * 30.02267 * 7 6 5 30 30 H 1.08994 * 109.46843 * 150.02522 * 7 6 5 31 31 H 1.00900 * 110.99938 * 56.04850 * 8 7 6 32 32 H 1.08997 * 109.47560 * 300.00424 * 9 8 7 33 33 H 1.09005 * 109.46905 * 60.00664 * 9 8 7 34 34 H 1.09004 * 109.47455 * 59.99912 * 11 10 9 35 35 H 1.09000 * 109.47543 * 180.02562 * 11 10 9 36 36 H 1.09005 * 109.47255 * 299.99543 * 11 10 9 37 37 H 1.09002 * 109.47176 * 59.99967 * 12 10 9 38 38 H 1.09001 * 109.47474 * 179.97438 * 12 10 9 39 39 H 1.09000 * 109.47483 * 300.00653 * 12 10 9 40 40 H 0.96993 * 119.99958 * 180.02562 * 16 15 13 41 41 H 1.08004 * 119.98065 * 179.97438 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2925 2.3751 -0.0058 5 6 1.9219 3.6052 -0.0117 6 6 3.3026 3.6775 -0.0112 7 6 3.9853 5.0210 -0.0170 8 7 4.2075 5.4513 -1.4038 9 6 4.8722 6.7605 -1.4487 10 6 5.0856 7.1745 -2.9061 11 6 5.9599 6.1342 -3.6090 12 6 3.7322 7.2653 -3.6138 13 6 5.7681 8.5173 -2.9521 14 1 6.0237 9.0250 -2.0337 15 6 6.0652 9.0984 -4.1667 16 7 5.7535 8.4805 -5.2850 17 14 6.9118 10.7625 -4.2237 18 1 8.2257 10.6733 -3.5376 19 1 7.1188 11.1644 -5.6382 20 1 6.0643 11.7727 -3.5406 21 6 4.0580 2.5196 -0.0058 22 6 3.4334 1.2855 -0.0001 23 9 4.1713 0.1538 0.0047 24 1 -0.3633 0.5140 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 0.2138 2.3201 -0.0063 28 1 1.3344 4.5114 -0.0166 29 1 3.3564 5.7503 0.4934 30 1 4.9431 4.9440 0.4974 31 1 3.3409 5.4683 -1.9204 32 1 4.2491 7.5018 -0.9483 33 1 5.8363 6.6960 -0.9441 34 1 5.4666 5.1628 -3.5758 35 1 6.1123 6.4294 -4.6472 36 1 6.9242 6.0696 -3.1048 37 1 3.1092 8.0064 -3.1131 38 1 3.8841 7.5607 -4.6520 39 1 3.2388 6.2939 -3.5805 40 1 5.9629 8.8891 -6.1394 41 1 5.1365 2.5788 -0.0058 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459690779.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:36 Heat of formation + Delta-G solvation = -78.881031 kcal Electronic energy + Delta-G solvation = -21725.237605 eV Core-core repulsion = 18326.115463 eV Total energy + Delta-G solvation = -3399.122142 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.82747 -41.03490 -39.16619 -38.19374 -35.49579 -33.12981 -31.73003 -31.07609 -28.48673 -27.47687 -27.22680 -26.54657 -24.52105 -23.74859 -22.22335 -20.31878 -19.30335 -18.08880 -17.90604 -17.66011 -17.14346 -16.88307 -16.24130 -16.04282 -15.78864 -15.55167 -15.25687 -15.14002 -14.60566 -14.27019 -14.16473 -13.83738 -13.25922 -13.20754 -13.05755 -12.95489 -12.80171 -12.61008 -12.47167 -12.28437 -12.09065 -12.07457 -11.98454 -11.94748 -11.27972 -10.92476 -10.58000 -10.32029 -9.92166 -9.26591 -9.02484 -7.94617 -6.11620 0.13450 0.20898 1.44807 1.45927 1.52390 2.20704 2.46866 2.52675 3.21462 3.27534 3.58041 3.70136 3.85917 4.08252 4.26075 4.38640 4.40431 4.45511 4.53375 4.60644 4.68470 4.73529 4.79464 4.91753 4.92418 5.06531 5.09526 5.16602 5.20905 5.32235 5.45399 5.54235 5.56699 5.65543 5.72286 5.79731 6.18698 6.27294 6.30440 6.37268 6.51701 6.66864 6.98694 7.56081 9.03279 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.035543 B = 0.003116 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.581436 B = 8983.206663 C = 9114.336473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.335 6.335 3 C 0.085 3.915 4 C -0.174 4.174 5 C -0.079 4.079 6 C -0.089 4.089 7 C 0.101 3.899 8 N -0.686 5.686 9 C 0.089 3.911 10 C 0.060 3.940 11 C -0.106 4.106 12 C -0.121 4.121 13 C -0.527 4.527 14 H 0.047 0.953 15 C 0.022 3.978 16 N -0.904 5.904 17 Si 0.944 3.056 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.100 4.100 22 C 0.037 3.963 23 F -0.149 7.149 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.119 0.881 27 H 0.168 0.832 28 H 0.153 0.847 29 H 0.050 0.950 30 H 0.078 0.922 31 H 0.340 0.660 32 H 0.016 0.984 33 H 0.050 0.950 34 H 0.032 0.968 35 H 0.046 0.954 36 H 0.009 0.991 37 H 0.019 0.981 38 H 0.053 0.947 39 H 0.033 0.967 40 H 0.257 0.743 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.333 -12.895 11.899 21.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.250 6.250 3 C 0.039 3.961 4 C -0.193 4.193 5 C -0.097 4.097 6 C -0.090 4.090 7 C -0.027 4.027 8 N -0.318 5.318 9 C -0.039 4.039 10 C 0.059 3.941 11 C -0.164 4.164 12 C -0.179 4.179 13 C -0.566 4.566 14 H 0.065 0.935 15 C -0.177 4.177 16 N -0.544 5.544 17 Si 0.770 3.230 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.119 4.119 22 C 0.018 3.982 23 F -0.128 7.128 24 H 0.091 0.909 25 H 0.087 0.913 26 H 0.137 0.863 27 H 0.185 0.815 28 H 0.170 0.830 29 H 0.068 0.932 30 H 0.096 0.904 31 H 0.160 0.840 32 H 0.034 0.966 33 H 0.069 0.931 34 H 0.051 0.949 35 H 0.065 0.935 36 H 0.028 0.972 37 H 0.039 0.961 38 H 0.072 0.928 39 H 0.052 0.948 40 H 0.066 0.934 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -11.627 -13.454 11.640 21.253 hybrid contribution 0.048 1.377 -0.087 1.381 sum -11.579 -12.077 11.553 20.332 Atomic orbital electron populations 1.23438 0.75668 1.05880 1.02791 1.86099 1.24172 1.25939 1.88752 1.19159 0.90534 0.86545 0.99903 1.21382 1.01551 0.90334 1.05999 1.21231 0.93527 0.98434 0.96516 1.19626 0.93744 0.94217 1.01420 1.20843 0.99782 0.91679 0.90394 1.60565 1.29425 1.29529 1.12330 1.21833 0.96795 0.87348 0.97954 1.18136 0.92755 0.92785 0.90415 1.21482 0.97167 0.96763 1.01010 1.21659 0.96784 0.97127 1.02294 1.21442 1.38681 1.04432 0.92020 0.93502 1.25542 0.96372 1.00193 0.95623 1.69964 1.48068 1.38914 0.97407 0.85846 0.79191 0.81207 0.76716 1.20214 1.21278 1.19936 1.20974 1.01450 0.89643 0.99831 1.17261 0.86794 0.82810 1.11367 1.91440 1.76918 1.49727 1.94676 0.90899 0.91296 0.86303 0.81479 0.82957 0.93151 0.90359 0.84028 0.96627 0.93133 0.94887 0.93466 0.97152 0.96145 0.92784 0.94777 0.93381 0.84021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.34 -7.43 10.36 -92.97 -0.96 -8.39 16 3 C 0.08 2.00 6.69 22.53 0.15 2.15 16 4 C -0.17 -3.17 9.04 22.36 0.20 -2.97 16 5 C -0.08 -1.53 9.69 22.26 0.22 -1.31 16 6 C -0.09 -2.13 5.39 -19.85 -0.11 -2.23 16 7 C 0.10 2.62 5.81 85.56 0.50 3.11 16 8 N -0.69 -22.48 5.70 -517.96 -2.95 -25.44 16 9 C 0.09 3.52 4.59 86.30 0.40 3.92 16 10 C 0.06 2.82 0.57 -52.93 -0.03 2.79 16 11 C -0.11 -5.20 8.09 71.98 0.58 -4.61 16 12 C -0.12 -5.54 7.92 71.98 0.57 -4.97 16 13 C -0.53 -28.09 8.01 25.60 0.21 -27.89 16 14 H 0.05 2.48 7.74 -2.91 -0.02 2.45 16 15 C 0.02 1.17 5.15 84.66 0.44 1.60 16 16 N -0.90 -50.47 9.35 21.45 0.20 -50.27 16 17 Si 0.94 43.05 29.54 68.60 2.03 45.08 16 18 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 19 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 21 C -0.10 -2.59 9.67 22.29 0.22 -2.37 16 22 C 0.04 1.02 7.31 22.45 0.16 1.19 16 23 F -0.15 -4.50 17.11 44.97 0.77 -3.73 16 24 H 0.07 0.58 7.67 -2.39 -0.02 0.56 16 25 H 0.07 0.63 7.65 -2.39 -0.02 0.61 16 26 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.17 1.89 6.30 -2.91 -0.02 1.87 16 28 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 29 H 0.05 1.17 8.08 -2.39 -0.02 1.15 16 30 H 0.08 2.02 8.08 -2.39 -0.02 2.00 16 31 H 0.34 10.92 6.76 -89.69 -0.61 10.31 16 32 H 0.02 0.60 8.14 -2.39 -0.02 0.59 16 33 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 34 H 0.03 1.48 7.60 -2.39 -0.02 1.46 16 35 H 0.05 2.55 6.07 -2.39 -0.01 2.54 16 36 H 0.01 0.46 8.14 -2.38 -0.02 0.45 16 37 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.05 2.81 6.07 -2.39 -0.01 2.79 16 39 H 0.03 1.36 6.57 -2.39 -0.02 1.35 16 40 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 41 H 0.14 3.59 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -61.88 334.88 4.11 -57.77 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: 0.42 Total: 15.28 kcal Atomic # 6 Polarization: -34.91 SS G_CDS: 4.61 Total: -30.30 kcal Atomic # 7 Polarization: -72.95 SS G_CDS: -2.75 Total: -75.71 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: -0.96 Total: -8.39 kcal Atomic # 9 Polarization: -4.50 SS G_CDS: 0.77 Total: -3.73 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -61.88 4.11 -57.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459690779.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.111 kcal (2) G-P(sol) polarization free energy of solvation -61.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds