Wall clock time and date at job start Tue Mar 31 2020 05:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47264 * 2 1 4 4 C 1.50698 * 109.46989 * 120.00038 * 2 1 3 5 5 C 1.38322 * 119.88055 * 234.20711 * 4 2 1 6 6 C 1.38016 * 120.12482 * 180.02562 * 5 4 2 7 7 C 1.39341 * 119.87339 * 359.97304 * 6 5 4 8 8 C 1.48399 * 120.11745 * 180.02562 * 7 6 5 9 9 C 1.39335 * 120.11903 * 359.72567 * 8 7 6 10 10 C 1.38016 * 119.87392 * 180.31862 * 9 8 7 11 11 C 1.38326 * 120.12486 * 359.93730 * 10 9 8 12 12 C 1.38327 * 120.23933 * 0.04195 * 11 10 9 13 13 C 1.38016 * 120.12221 * 0.02562 * 12 11 10 14 14 C 1.39336 * 119.76127 * 0.28311 * 7 6 5 15 15 C 1.38022 * 119.87770 * 359.48525 * 14 7 6 16 16 N 1.46504 * 109.47087 * 240.00135 * 2 1 3 17 17 C 1.46498 * 119.99928 * 123.83933 * 16 2 1 18 18 C 1.36936 * 119.99970 * 303.84461 * 16 2 1 19 19 H 1.08007 * 120.00008 * 0.70929 * 18 16 2 20 20 C 1.38806 * 120.00219 * 180.71151 * 18 16 2 21 21 N 1.31619 * 119.99926 * 7.84429 * 20 18 16 22 22 Si 1.86800 * 120.00338 * 187.84558 * 20 18 16 23 23 H 1.48498 * 109.47166 * 89.99783 * 22 20 18 24 24 H 1.48507 * 109.47143 * 210.00027 * 22 20 18 25 25 H 1.48498 * 109.46860 * 329.99492 * 22 20 18 26 26 H 1.09007 * 109.47341 * 59.99891 * 1 2 3 27 27 H 1.09000 * 109.47264 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47249 * 299.99798 * 1 2 3 29 29 H 1.07998 * 119.93291 * 0.02562 * 5 4 2 30 30 H 1.07997 * 120.06413 * 179.97438 * 6 5 4 31 31 H 1.08000 * 120.06024 * 0.25416 * 9 8 7 32 32 H 1.08004 * 119.94152 * 179.97438 * 10 9 8 33 33 H 1.07993 * 119.88091 * 180.02562 * 11 10 9 34 34 H 1.07998 * 119.93219 * 179.97438 * 12 11 10 35 35 H 1.07995 * 120.05861 * 179.97438 * 13 12 11 36 36 H 1.07994 * 120.06236 * 179.70075 * 14 7 6 37 37 H 1.07993 * 119.94197 * 180.23167 * 15 14 7 38 38 H 1.08997 * 109.47354 * 354.64080 * 17 16 2 39 39 H 1.08998 * 109.46912 * 114.64658 * 17 16 2 40 40 H 1.08998 * 109.47160 * 234.64295 * 17 16 2 41 41 H 0.96996 * 120.00350 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.9233 -0.0759 2.0770 6 6 3.3870 -0.7220 3.2050 7 6 2.9554 -2.0157 3.4906 8 6 3.4500 -2.7153 4.7023 9 6 4.3521 -2.0830 5.5554 10 6 4.8139 -2.7408 6.6774 11 6 4.3819 -4.0249 6.9563 12 6 3.4861 -4.6571 6.1130 13 6 3.0189 -4.0092 4.9875 14 6 2.0619 -2.6522 2.6315 15 6 1.6010 -1.9949 1.5088 16 7 2.0183 -0.6906 -1.1962 17 6 2.9286 -0.0055 -2.1172 18 6 1.6239 -1.9764 -1.4535 19 1 0.9437 -2.4775 -0.7805 20 6 2.0981 -2.6359 -2.5790 21 7 3.0422 -2.0875 -3.3141 22 14 1.3967 -4.3018 -3.0505 23 1 0.2356 -4.1115 -3.9564 24 1 2.4398 -5.1000 -3.7435 25 1 0.9572 -5.0182 -1.8262 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 3.2568 0.9270 1.8549 30 1 4.0830 -0.2258 3.8652 31 1 4.6900 -1.0804 5.3386 32 1 5.5134 -2.2518 7.3392 33 1 4.7455 -4.5358 7.8356 34 1 3.1525 -5.6599 6.3353 35 1 2.3199 -4.5040 4.3295 36 1 1.7280 -3.6567 2.8455 37 1 0.9055 -2.4858 0.8442 38 1 3.0524 1.0306 -1.8021 39 1 3.8970 -0.5057 -2.1101 40 1 2.5136 -0.0317 -3.1248 41 1 3.3734 -2.5481 -4.1009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000464766540.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:20 Heat of formation + Delta-G solvation = 80.857406 kcal Electronic energy + Delta-G solvation = -21165.292075 eV Core-core repulsion = 18203.865936 eV Total energy + Delta-G solvation = -2961.426139 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.67748 -38.35728 -35.95943 -32.97169 -31.40698 -31.28380 -30.20823 -29.35190 -27.64681 -25.95724 -23.99207 -23.20636 -22.60160 -21.24023 -20.77719 -19.52811 -17.54814 -16.59090 -15.81884 -15.36030 -15.13193 -14.69163 -14.08712 -13.91132 -13.62900 -13.52974 -13.27590 -13.11392 -13.04016 -12.67937 -12.30134 -11.94216 -11.68855 -11.45681 -11.35560 -11.09128 -10.96152 -10.82206 -10.67038 -10.52677 -10.28527 -10.11208 -9.79146 -9.47968 -9.29263 -8.94798 -8.53525 -8.37110 -7.58716 -6.90568 -5.64236 -3.03993 0.93325 1.41135 1.97302 2.25249 3.38539 3.43559 3.45690 3.81988 4.41157 4.54758 4.80972 4.82792 4.94619 5.07218 5.30497 5.39765 5.42521 5.47609 5.48783 5.58725 5.65630 5.86379 5.93485 6.03461 6.05440 6.09680 6.25988 6.36488 6.42626 6.49238 6.50513 6.53924 6.64002 6.70466 6.76577 6.87731 6.98647 7.04933 7.10619 7.34064 7.52974 7.66399 7.74332 7.94461 8.37275 9.26721 9.89697 10.32560 11.35572 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.019380 B = 0.004485 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.468592 B = 6241.293220 C = 7003.355728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.205 3.795 3 H 0.062 0.938 4 C -0.062 4.062 5 C -0.121 4.121 6 C -0.113 4.113 7 C -0.077 4.077 8 C -0.024 4.024 9 C -0.119 4.119 10 C -0.119 4.119 11 C -0.133 4.133 12 C -0.118 4.118 13 C -0.118 4.118 14 C -0.110 4.110 15 C -0.093 4.093 16 N -0.599 5.599 17 C 0.169 3.831 18 C -0.239 4.239 19 H 0.080 0.920 20 C -0.006 4.006 21 N -0.916 5.916 22 Si 0.904 3.096 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.281 1.281 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.040 0.960 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.124 0.876 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.120 0.880 35 H 0.125 0.875 36 H 0.116 0.884 37 H 0.131 0.869 38 H -0.009 1.009 39 H 0.039 0.961 40 H 0.047 0.953 41 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.237 0.874 16.715 16.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.096 3.904 3 H 0.080 0.920 4 C -0.065 4.065 5 C -0.140 4.140 6 C -0.131 4.131 7 C -0.077 4.077 8 C -0.024 4.024 9 C -0.137 4.137 10 C -0.137 4.137 11 C -0.151 4.151 12 C -0.136 4.136 13 C -0.136 4.136 14 C -0.128 4.128 15 C -0.112 4.112 16 N -0.320 5.320 17 C 0.025 3.975 18 C -0.368 4.368 19 H 0.098 0.902 20 C -0.202 4.202 21 N -0.563 5.563 22 Si 0.734 3.266 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.206 1.206 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.059 0.941 29 H 0.133 0.867 30 H 0.133 0.867 31 H 0.142 0.858 32 H 0.138 0.862 33 H 0.136 0.864 34 H 0.138 0.862 35 H 0.143 0.857 36 H 0.133 0.867 37 H 0.149 0.851 38 H 0.010 0.990 39 H 0.057 0.943 40 H 0.066 0.934 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.335 0.813 16.483 16.506 hybrid contribution -0.102 -1.108 -0.348 1.166 sum 0.233 -0.295 16.134 16.139 Atomic orbital electron populations 1.22205 0.97287 1.01850 0.99799 1.19355 0.93002 0.93804 0.84203 0.92021 1.20959 0.95297 0.95327 0.94961 1.20921 0.98387 0.99848 0.94840 1.21006 1.00106 0.94224 0.97768 1.18592 0.99746 0.94590 0.94780 1.18921 0.95899 0.93682 0.93851 1.21247 0.97594 1.00161 0.94720 1.21051 1.00087 0.95171 0.97352 1.21124 0.98676 0.95463 0.99846 1.21068 0.97782 0.99779 0.94930 1.21289 1.00399 0.94422 0.97480 1.21168 0.97512 0.99247 0.94912 1.21225 1.00029 0.94535 0.95381 1.44240 1.53933 1.13005 1.20820 1.21097 0.94219 0.89315 0.92862 1.19337 1.21842 0.89678 1.05895 0.90202 1.24832 0.98478 0.98526 0.98335 1.70213 1.29525 1.38098 1.18507 0.86242 0.78195 0.83712 0.78405 1.21563 1.21771 1.20646 0.92834 0.92418 0.94108 0.86670 0.86736 0.85835 0.86236 0.86435 0.86187 0.85712 0.86650 0.85099 0.99027 0.94281 0.93426 0.93974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 8.85 37.16 0.33 -2.43 16 2 C 0.20 4.11 3.09 -69.08 -0.21 3.90 16 3 H 0.06 1.16 7.29 -51.93 -0.38 0.78 16 4 C -0.06 -1.20 4.97 -104.56 -0.52 -1.72 16 5 C -0.12 -2.07 9.65 -39.63 -0.38 -2.46 16 6 C -0.11 -1.79 9.43 -39.25 -0.37 -2.16 16 7 C -0.08 -1.25 5.88 -104.89 -0.62 -1.87 16 8 C -0.02 -0.34 5.88 -104.90 -0.62 -0.96 16 9 C -0.12 -1.51 9.43 -39.26 -0.37 -1.88 16 10 C -0.12 -1.30 10.03 -39.63 -0.40 -1.70 16 11 C -0.13 -1.41 10.04 -39.52 -0.40 -1.81 16 12 C -0.12 -1.33 10.03 -39.63 -0.40 -1.73 16 13 C -0.12 -1.56 9.43 -39.25 -0.37 -1.93 16 14 C -0.11 -1.90 9.43 -39.25 -0.37 -2.27 16 15 C -0.09 -1.79 8.19 -39.63 -0.32 -2.11 16 16 N -0.60 -14.68 2.86 -174.81 -0.50 -15.18 16 17 C 0.17 4.21 9.01 59.85 0.54 4.75 16 18 C -0.24 -6.29 8.16 -15.06 -0.12 -6.41 16 19 H 0.08 2.01 4.49 -52.48 -0.24 1.77 16 20 C -0.01 -0.15 5.41 -17.43 -0.09 -0.25 16 21 N -0.92 -26.48 9.50 55.49 0.53 -25.95 16 22 Si 0.90 21.83 29.56 -169.99 -5.02 16.81 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.06 1.09 6.12 -51.93 -0.32 0.77 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.12 1.75 7.95 -52.49 -0.42 1.33 16 30 H 0.11 1.50 6.21 -52.49 -0.33 1.18 16 31 H 0.12 1.39 6.21 -52.49 -0.33 1.06 16 32 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 33 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 35 H 0.13 1.53 6.21 -52.49 -0.33 1.21 16 36 H 0.12 1.74 6.21 -52.49 -0.33 1.41 16 37 H 0.13 2.62 4.80 -52.49 -0.25 2.36 16 38 H -0.01 -0.19 7.56 -51.93 -0.39 -0.59 16 39 H 0.04 1.07 7.12 -51.93 -0.37 0.70 16 40 H 0.05 1.28 6.98 -51.93 -0.36 0.92 16 41 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 326.06 15.07 4.91 4.91 Total: -1.00 -29.72 326.06 -10.06 -39.77 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -5.28 Total: 2.65 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: -4.69 Total: -23.01 kcal Atomic # 7 Polarization: -41.16 SS G_CDS: 0.03 Total: -41.13 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.72 -10.06 -39.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000464766540.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.631 kcal (2) G-P(sol) polarization free energy of solvation -29.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds