Wall clock time and date at job start Tue Mar 31 2020 05:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47264 * 2 1 4 4 C 1.50698 * 109.46989 * 120.00038 * 2 1 3 5 5 C 1.38322 * 119.88055 * 234.20711 * 4 2 1 6 6 C 1.38016 * 120.12482 * 180.02562 * 5 4 2 7 7 C 1.39341 * 119.87339 * 359.97304 * 6 5 4 8 8 C 1.48399 * 120.11745 * 180.02562 * 7 6 5 9 9 C 1.39335 * 120.11903 * 359.72567 * 8 7 6 10 10 C 1.38016 * 119.87392 * 180.31862 * 9 8 7 11 11 C 1.38326 * 120.12486 * 359.93730 * 10 9 8 12 12 C 1.38327 * 120.23933 * 0.04195 * 11 10 9 13 13 C 1.38016 * 120.12221 * 0.02562 * 12 11 10 14 14 C 1.39336 * 119.76127 * 0.28311 * 7 6 5 15 15 C 1.38022 * 119.87770 * 359.48525 * 14 7 6 16 16 N 1.46504 * 109.47087 * 240.00135 * 2 1 3 17 17 C 1.46498 * 119.99928 * 123.83933 * 16 2 1 18 18 C 1.36936 * 119.99970 * 303.84461 * 16 2 1 19 19 H 1.08007 * 120.00008 * 0.70929 * 18 16 2 20 20 C 1.38806 * 120.00219 * 180.71151 * 18 16 2 21 21 N 1.31619 * 119.99926 * 7.84429 * 20 18 16 22 22 Si 1.86800 * 120.00338 * 187.84558 * 20 18 16 23 23 H 1.48498 * 109.47166 * 89.99783 * 22 20 18 24 24 H 1.48507 * 109.47143 * 210.00027 * 22 20 18 25 25 H 1.48498 * 109.46860 * 329.99492 * 22 20 18 26 26 H 1.09007 * 109.47341 * 59.99891 * 1 2 3 27 27 H 1.09000 * 109.47264 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47249 * 299.99798 * 1 2 3 29 29 H 1.07998 * 119.93291 * 0.02562 * 5 4 2 30 30 H 1.07997 * 120.06413 * 179.97438 * 6 5 4 31 31 H 1.08000 * 120.06024 * 0.25416 * 9 8 7 32 32 H 1.08004 * 119.94152 * 179.97438 * 10 9 8 33 33 H 1.07993 * 119.88091 * 180.02562 * 11 10 9 34 34 H 1.07998 * 119.93219 * 179.97438 * 12 11 10 35 35 H 1.07995 * 120.05861 * 179.97438 * 13 12 11 36 36 H 1.07994 * 120.06236 * 179.70075 * 14 7 6 37 37 H 1.07993 * 119.94197 * 180.23167 * 15 14 7 38 38 H 1.08997 * 109.47354 * 354.64080 * 17 16 2 39 39 H 1.08998 * 109.46912 * 114.64658 * 17 16 2 40 40 H 1.08998 * 109.47160 * 234.64295 * 17 16 2 41 41 H 0.96996 * 120.00350 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.9233 -0.0759 2.0770 6 6 3.3870 -0.7220 3.2050 7 6 2.9554 -2.0157 3.4906 8 6 3.4500 -2.7153 4.7023 9 6 4.3521 -2.0830 5.5554 10 6 4.8139 -2.7408 6.6774 11 6 4.3819 -4.0249 6.9563 12 6 3.4861 -4.6571 6.1130 13 6 3.0189 -4.0092 4.9875 14 6 2.0619 -2.6522 2.6315 15 6 1.6010 -1.9949 1.5088 16 7 2.0183 -0.6906 -1.1962 17 6 2.9286 -0.0055 -2.1172 18 6 1.6239 -1.9764 -1.4535 19 1 0.9437 -2.4775 -0.7805 20 6 2.0981 -2.6359 -2.5790 21 7 3.0422 -2.0875 -3.3141 22 14 1.3967 -4.3018 -3.0505 23 1 0.2356 -4.1115 -3.9564 24 1 2.4398 -5.1000 -3.7435 25 1 0.9572 -5.0182 -1.8262 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 3.2568 0.9270 1.8549 30 1 4.0830 -0.2258 3.8652 31 1 4.6900 -1.0804 5.3386 32 1 5.5134 -2.2518 7.3392 33 1 4.7455 -4.5358 7.8356 34 1 3.1525 -5.6599 6.3353 35 1 2.3199 -4.5040 4.3295 36 1 1.7280 -3.6567 2.8455 37 1 0.9055 -2.4858 0.8442 38 1 3.0524 1.0306 -1.8021 39 1 3.8970 -0.5057 -2.1101 40 1 2.5136 -0.0317 -3.1248 41 1 3.3734 -2.5481 -4.1009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000464766540.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:20 Heat of formation + Delta-G solvation = 67.648652 kcal Electronic energy + Delta-G solvation = -21165.864850 eV Core-core repulsion = 18203.865936 eV Total energy + Delta-G solvation = -2961.998913 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.84328 -39.54254 -37.59619 -34.56914 -32.84995 -32.35801 -31.37383 -31.00902 -28.91402 -27.96857 -25.46716 -24.33427 -24.08764 -22.48794 -22.02356 -21.01614 -18.93074 -18.09643 -17.23067 -16.70541 -16.44199 -16.08871 -15.44508 -15.29264 -15.05038 -14.73299 -14.64039 -14.61624 -14.24133 -13.95517 -13.79147 -13.37293 -13.17591 -13.00676 -12.84950 -12.72250 -12.48395 -12.29277 -12.19330 -12.00820 -11.89862 -11.73791 -11.38828 -11.25567 -10.58774 -10.41202 -9.83744 -9.72294 -8.95097 -8.73137 -7.70089 -5.11275 -0.15634 0.52119 0.62922 1.08130 1.45204 1.46152 1.53310 2.51974 2.78154 3.20861 3.40187 3.71102 3.73822 3.88421 4.04412 4.12251 4.17807 4.23960 4.36614 4.44899 4.54487 4.56890 4.62835 4.71510 4.83003 4.87548 5.00383 5.03055 5.10848 5.13990 5.25196 5.28593 5.38692 5.45692 5.50572 5.59865 5.62754 5.65947 5.73258 5.87198 5.90032 5.94634 6.11885 6.21147 6.35946 7.22273 7.95133 8.33041 9.28975 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.019380 B = 0.004485 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.468592 B = 6241.293220 C = 7003.355728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.199 3.801 3 H 0.076 0.924 4 C -0.086 4.086 5 C -0.123 4.123 6 C -0.115 4.115 7 C -0.071 4.071 8 C -0.055 4.055 9 C -0.126 4.126 10 C -0.122 4.122 11 C -0.127 4.127 12 C -0.124 4.124 13 C -0.132 4.132 14 C -0.124 4.124 15 C -0.109 4.109 16 N -0.614 5.614 17 C 0.184 3.816 18 C -0.228 4.228 19 H 0.088 0.912 20 C -0.068 4.068 21 N -0.949 5.949 22 Si 0.958 3.042 23 H -0.288 1.288 24 H -0.301 1.301 25 H -0.269 1.269 26 H 0.048 0.952 27 H 0.043 0.957 28 H 0.068 0.932 29 H 0.135 0.865 30 H 0.144 0.856 31 H 0.135 0.865 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.143 0.857 35 H 0.124 0.876 36 H 0.128 0.872 37 H 0.114 0.886 38 H 0.023 0.977 39 H 0.006 0.994 40 H 0.019 0.981 41 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.621 0.826 20.113 20.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.093 3.907 3 H 0.094 0.906 4 C -0.088 4.088 5 C -0.142 4.142 6 C -0.133 4.133 7 C -0.071 4.071 8 C -0.055 4.055 9 C -0.144 4.144 10 C -0.139 4.139 11 C -0.145 4.145 12 C -0.142 4.142 13 C -0.150 4.150 14 C -0.142 4.142 15 C -0.128 4.128 16 N -0.337 5.337 17 C 0.040 3.960 18 C -0.358 4.358 19 H 0.105 0.895 20 C -0.260 4.260 21 N -0.600 5.600 22 Si 0.788 3.212 23 H -0.215 1.215 24 H -0.228 1.228 25 H -0.194 1.194 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.087 0.913 29 H 0.153 0.847 30 H 0.162 0.838 31 H 0.153 0.847 32 H 0.166 0.834 33 H 0.166 0.834 34 H 0.160 0.840 35 H 0.142 0.858 36 H 0.146 0.854 37 H 0.132 0.868 38 H 0.042 0.958 39 H 0.025 0.975 40 H 0.038 0.962 41 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 0.687 0.776 19.942 19.969 hybrid contribution -0.195 -1.082 -1.112 1.564 sum 0.492 -0.306 18.830 18.839 Atomic orbital electron populations 1.22081 0.95791 1.01341 1.00936 1.19586 0.93947 0.94143 0.83064 0.90576 1.20850 0.96771 0.95507 0.95710 1.21174 0.97479 1.00756 0.94775 1.21349 1.00156 0.94137 0.97650 1.18911 0.98424 0.94774 0.95004 1.18975 0.97885 0.94573 0.94089 1.21478 0.97094 1.00822 0.94960 1.21432 1.00088 0.95397 0.97021 1.21569 0.97368 0.95347 1.00231 1.21390 0.97701 1.00810 0.94277 1.21457 1.00771 0.94363 0.98420 1.21339 0.98107 1.00021 0.94706 1.21168 1.00531 0.94963 0.96118 1.44439 1.53914 1.12649 1.22650 1.20745 0.92530 0.90682 0.92042 1.19674 1.20593 0.90339 1.05191 0.89455 1.25535 0.99584 1.01769 0.99096 1.70415 1.31337 1.39281 1.18966 0.85357 0.77131 0.80477 0.78209 1.21472 1.22775 1.19419 0.93286 0.93743 0.91279 0.84717 0.83801 0.84693 0.83407 0.83441 0.83963 0.85818 0.85381 0.86824 0.95811 0.97508 0.96232 0.95009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.06 8.85 71.98 0.64 -4.42 16 2 C 0.20 7.89 3.09 44.24 0.14 8.02 16 3 H 0.08 2.74 7.29 -2.39 -0.02 2.72 16 4 C -0.09 -3.25 4.97 -19.82 -0.10 -3.35 16 5 C -0.12 -4.02 9.65 22.24 0.21 -3.80 16 6 C -0.12 -3.42 9.43 22.48 0.21 -3.21 16 7 C -0.07 -2.22 5.88 -20.04 -0.12 -2.34 16 8 C -0.06 -1.50 5.88 -20.04 -0.12 -1.62 16 9 C -0.13 -2.83 9.43 22.48 0.21 -2.62 16 10 C -0.12 -2.21 10.03 22.24 0.22 -1.98 16 11 C -0.13 -2.20 10.04 22.31 0.22 -1.98 16 12 C -0.12 -2.45 10.03 22.24 0.22 -2.22 16 13 C -0.13 -3.27 9.43 22.48 0.21 -3.06 16 14 C -0.12 -4.23 9.43 22.48 0.21 -4.02 16 15 C -0.11 -4.21 8.19 22.24 0.18 -4.03 16 16 N -0.61 -30.50 2.86 -706.99 -2.02 -32.52 16 17 C 0.18 9.41 9.01 127.77 1.15 10.56 16 18 C -0.23 -12.26 8.16 84.03 0.69 -11.57 16 19 H 0.09 4.48 4.49 -2.91 -0.01 4.47 16 20 C -0.07 -3.83 5.41 84.86 0.46 -3.37 16 21 N -0.95 -57.10 9.50 21.65 0.21 -56.90 16 22 Si 0.96 46.05 29.56 68.60 2.03 48.08 16 23 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 24 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 25 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 26 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 27 H 0.04 1.67 6.12 -2.39 -0.01 1.66 16 28 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.13 3.76 7.95 -2.91 -0.02 3.74 16 30 H 0.14 3.33 6.21 -2.91 -0.02 3.31 16 31 H 0.14 2.59 6.21 -2.91 -0.02 2.58 16 32 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 33 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 34 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 35 H 0.12 2.94 6.21 -2.91 -0.02 2.92 16 36 H 0.13 3.87 6.21 -2.91 -0.02 3.85 16 37 H 0.11 4.66 4.80 -2.91 -0.01 4.65 16 38 H 0.02 1.02 7.56 -2.39 -0.02 1.00 16 39 H 0.01 0.37 7.12 -2.39 -0.02 0.35 16 40 H 0.02 1.08 6.98 -2.39 -0.02 1.06 16 41 H 0.24 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -65.74 326.06 5.89 -59.84 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 1.03 Total: 16.50 kcal Atomic # 6 Polarization: -39.65 SS G_CDS: 4.65 Total: -35.00 kcal Atomic # 7 Polarization: -87.60 SS G_CDS: -1.82 Total: -89.42 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -65.74 5.89 -59.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000464766540.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.491 kcal (2) G-P(sol) polarization free energy of solvation -65.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds