Wall clock time and date at job start Tue Mar 31 2020 05:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46830 * 2 1 4 4 C 1.52999 * 109.47006 * 240.00615 * 2 1 3 5 5 C 1.50693 * 109.47567 * 59.99387 * 4 2 1 6 6 H 1.08001 * 119.99837 * 0.02562 * 5 4 2 7 7 C 1.37872 * 120.00198 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00193 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00263 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46655 * 60.00198 * 9 7 5 11 11 H 1.48497 * 109.47077 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47154 * 300.00471 * 9 7 5 13 13 C 1.52999 * 109.47478 * 120.00018 * 2 1 3 14 14 N 1.46907 * 109.47077 * 300.00131 * 13 2 1 15 15 C 1.46897 * 110.99767 * 180.02562 * 14 13 2 16 16 C 1.52996 * 109.46997 * 180.02562 * 15 14 13 17 17 C 1.53000 * 109.47210 * 179.97438 * 16 15 14 18 18 C 1.50706 * 109.47116 * 179.97438 * 17 16 15 19 19 C 1.33391 * 125.19937 * 90.00083 * 18 17 16 20 20 C 1.38423 * 114.92045 * 179.97438 * 19 18 17 21 21 C 1.33390 * 114.91979 * 359.97438 * 20 19 18 22 22 S 1.75878 * 125.20693 * 269.69344 * 18 17 16 23 23 H 1.09005 * 109.46840 * 299.99836 * 1 2 3 24 24 H 1.08992 * 109.47643 * 60.00111 * 1 2 3 25 25 H 1.09005 * 109.46849 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47421 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47461 * 300.00208 * 3 2 1 28 28 H 1.09005 * 109.47274 * 60.00430 * 3 2 1 29 29 H 1.09006 * 109.47043 * 179.97438 * 4 2 1 30 30 H 1.08997 * 109.46605 * 299.98907 * 4 2 1 31 31 H 0.97001 * 120.00308 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.46754 * 180.02562 * 13 2 1 33 33 H 1.08992 * 109.47167 * 60.00041 * 13 2 1 34 34 H 1.00899 * 110.99877 * 56.04732 * 14 13 2 35 35 H 1.08997 * 109.47661 * 60.00082 * 15 14 13 36 36 H 1.09000 * 109.46973 * 299.99717 * 15 14 13 37 37 H 1.09000 * 109.47531 * 59.99474 * 16 15 14 38 38 H 1.09008 * 109.47250 * 300.00049 * 16 15 14 39 39 H 1.09000 * 109.46884 * 60.00289 * 17 16 15 40 40 H 1.09000 * 109.46955 * 299.99604 * 17 16 15 41 41 H 1.07995 * 122.54106 * 359.95411 * 19 18 17 42 42 H 1.08001 * 122.53959 * 180.02562 * 20 19 18 43 43 H 1.07998 * 125.20163 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9169 0.8675 -2.3806 7 6 1.8711 -0.4814 -3.7320 8 7 2.6272 -1.5506 -3.8527 9 14 1.2477 0.3987 -5.2572 10 1 1.7416 1.7992 -5.2570 11 1 1.7428 -0.3012 -6.4697 12 1 -0.2373 0.3976 -5.2572 13 6 2.0401 -0.7212 1.2492 14 7 1.5504 -0.0287 2.4487 15 6 2.0220 -0.6945 3.6703 16 6 1.4925 0.0532 4.8955 17 6 1.9831 -0.6405 6.1678 18 6 1.4620 0.0964 7.3747 19 6 0.3062 -0.1570 7.9905 20 6 0.0371 0.6513 9.0816 21 6 0.9747 1.5607 9.3521 22 16 2.2882 1.4170 8.1913 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.1299 1.4427 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9564 0.8901 29 1 3.1300 -0.7207 -1.2496 30 1 1.6767 -1.7488 -1.2492 31 1 2.8616 -1.8820 -4.7338 32 1 3.1301 -0.7208 1.2493 33 1 1.6768 -1.7488 1.2492 34 1 0.5439 0.0413 2.4402 35 1 3.1119 -0.6939 3.6869 36 1 1.6589 -1.7221 3.6873 37 1 0.4026 0.0523 4.8788 38 1 1.8551 1.0811 4.8787 39 1 3.0730 -0.6398 6.1848 40 1 1.6200 -1.6681 6.1844 41 1 -0.3687 -0.9336 7.6625 42 1 -0.8633 0.5525 9.6697 43 1 0.9351 2.2736 10.1625 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000539857402.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:56 Heat of formation + Delta-G solvation = 1.083941 kcal Electronic energy + Delta-G solvation = -19120.489554 eV Core-core repulsion = 16291.048130 eV Total energy + Delta-G solvation = -2829.441424 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.35654 -37.68860 -35.52332 -33.19517 -31.99434 -29.23587 -26.98451 -26.31694 -26.10033 -24.54416 -23.11040 -21.99978 -21.41277 -19.48213 -17.81219 -17.31255 -16.23558 -15.97848 -15.54346 -14.89061 -14.55358 -14.25057 -13.96675 -13.41981 -13.24170 -13.11826 -12.83737 -12.59890 -12.53293 -11.99254 -11.97935 -11.76000 -11.70587 -11.28754 -11.01728 -10.94468 -10.87093 -10.77665 -10.68475 -10.45830 -10.22867 -10.10966 -9.65474 -9.01201 -8.87832 -8.79017 -8.71432 -8.29611 -8.06197 -5.94249 -3.94362 0.75786 1.39666 1.77127 2.50093 3.36055 3.40555 3.42885 4.30525 4.50400 4.63137 4.78811 4.83258 5.12112 5.21012 5.29069 5.37849 5.41331 5.45285 5.57399 5.69952 5.73232 5.79654 5.86680 6.00150 6.04331 6.09507 6.15752 6.26636 6.29047 6.36778 6.53775 6.69173 6.81742 6.85565 7.23418 7.25660 7.28954 7.43324 7.69686 7.73655 7.88124 8.06025 8.50590 9.10783 9.68226 11.17379 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.047574 B = 0.002357 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.412335 B =11875.667792 C =11940.255088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.058 4.058 3 C -0.116 4.116 4 C 0.033 3.967 5 C -0.507 4.507 6 H 0.058 0.942 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.070 3.930 14 N -0.688 5.688 15 C 0.058 3.942 16 C -0.111 4.111 17 C -0.050 4.050 18 C -0.162 4.162 19 C -0.147 4.147 20 C -0.132 4.132 21 C -0.222 4.222 22 S 0.096 5.904 23 H 0.033 0.967 24 H 0.064 0.936 25 H 0.039 0.961 26 H 0.039 0.961 27 H 0.054 0.946 28 H 0.042 0.958 29 H 0.015 0.985 30 H 0.012 0.988 31 H 0.259 0.741 32 H 0.065 0.935 33 H 0.022 0.978 34 H 0.338 0.662 35 H 0.069 0.931 36 H 0.025 0.975 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.073 3.108 25.340 25.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.059 4.059 3 C -0.173 4.173 4 C -0.004 4.004 5 C -0.545 4.545 6 H 0.076 0.924 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.204 1.204 13 C -0.058 4.058 14 N -0.320 5.320 15 C -0.072 4.072 16 C -0.149 4.149 17 C -0.090 4.090 18 C -0.280 4.280 19 C -0.177 4.177 20 C -0.163 4.163 21 C -0.357 4.357 22 S 0.359 5.641 23 H 0.052 0.948 24 H 0.083 0.917 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.033 0.967 30 H 0.031 0.969 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.041 0.959 34 H 0.156 0.844 35 H 0.088 0.912 36 H 0.043 0.957 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.156 0.844 42 H 0.155 0.845 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -1.113 4.218 25.004 25.382 hybrid contribution -2.209 -1.146 -0.624 2.566 sum -3.322 3.072 24.379 24.796 Atomic orbital electron populations 1.21770 0.96124 1.00325 1.00409 1.20627 0.94704 0.96134 0.94423 1.21599 0.99759 0.95820 1.00147 1.19124 0.96112 0.94970 0.90200 1.21199 1.30791 1.11880 0.90621 0.92356 1.25020 0.95430 0.95142 0.99051 1.69957 1.37266 1.23203 1.23368 0.86720 0.79133 0.79829 0.82682 1.20306 1.21461 1.20373 1.22105 0.99746 0.94628 0.89363 1.60550 1.16288 1.53859 1.01262 1.21933 1.00448 0.95054 0.89755 1.21577 1.00947 1.00352 0.92035 1.20168 1.00845 0.98318 0.89648 1.24580 0.99195 1.01780 1.02435 1.20137 0.97575 1.02717 0.97295 1.20172 1.00611 0.96624 0.98861 1.25597 0.98961 1.05962 1.05224 1.84377 1.22811 1.32819 1.24060 0.94808 0.91723 0.94145 0.94205 0.92724 0.93890 0.96689 0.96941 0.93128 0.91629 0.95936 0.84353 0.91222 0.95678 0.91846 0.90841 0.90580 0.89987 0.84390 0.84472 0.82101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 7.89 37.16 0.29 -2.12 16 2 C -0.06 -1.18 0.60 -154.51 -0.09 -1.27 16 3 C -0.12 -2.28 8.06 37.16 0.30 -1.98 16 4 C 0.03 0.85 4.04 -27.89 -0.11 0.74 16 5 C -0.51 -13.94 7.65 -34.45 -0.26 -14.21 16 6 H 0.06 1.56 5.68 -52.49 -0.30 1.26 16 7 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 9 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 13 C 0.07 1.22 4.65 -3.82 -0.02 1.21 16 14 N -0.69 -9.99 5.71 -113.78 -0.65 -10.64 16 15 C 0.06 0.69 5.69 -3.83 -0.02 0.66 16 16 C -0.11 -1.12 5.46 -26.73 -0.15 -1.26 16 17 C -0.05 -0.44 5.71 -27.88 -0.16 -0.59 16 18 C -0.16 -1.51 5.76 -36.00 -0.21 -1.72 16 19 C -0.15 -1.30 10.05 -41.21 -0.41 -1.71 16 20 C -0.13 -1.08 10.18 -41.21 -0.42 -1.50 16 21 C -0.22 -1.79 11.23 29.04 0.33 -1.46 16 22 S 0.10 0.86 23.33 -107.50 -2.51 -1.65 16 23 H 0.03 0.54 6.57 -51.93 -0.34 0.19 16 24 H 0.06 1.31 6.62 -51.93 -0.34 0.97 16 25 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 1.14 6.62 -51.93 -0.34 0.80 16 28 H 0.04 0.76 7.60 -51.93 -0.39 0.37 16 29 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.34 4.71 6.77 -39.29 -0.27 4.45 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.82 8.14 -51.92 -0.42 0.39 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 42 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 43 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 355.66 15.07 5.36 5.36 Total: -1.00 -29.56 355.66 -10.58 -40.14 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -7.46 Total: 0.14 kcal Atomic # 6 Polarization: -22.74 SS G_CDS: -1.03 Total: -23.77 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 0.09 Total: -36.91 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.51 Total: -1.65 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.56 -10.58 -40.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000539857402.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.228 kcal (2) G-P(sol) polarization free energy of solvation -29.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds