Wall clock time and date at job start Tue Mar 31 2020 05:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33391 * 125.20172 * 2 1 4 4 C 1.38424 * 114.91749 * 179.97438 * 3 2 1 5 5 C 1.50703 * 122.53672 * 179.97438 * 4 3 2 6 6 N 1.46899 * 109.47107 * 260.02488 * 5 4 3 7 7 C 1.46904 * 111.00029 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.46950 * 180.02562 * 7 6 5 9 9 C 1.53001 * 109.47312 * 300.00123 * 8 7 6 10 10 C 1.52997 * 109.47169 * 60.00159 * 8 7 6 11 11 C 1.53003 * 109.47071 * 180.02562 * 8 7 6 12 12 C 1.50704 * 109.47153 * 179.97438 * 11 8 7 13 13 H 1.07997 * 119.99780 * 359.97438 * 12 11 8 14 14 C 1.37871 * 119.99793 * 180.02562 * 12 11 8 15 15 N 1.31509 * 120.00101 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 120.00154 * 0.02562 * 14 12 11 17 17 H 1.48507 * 109.47418 * 89.99759 * 16 14 12 18 18 H 1.48508 * 109.47382 * 210.00052 * 16 14 12 19 19 H 1.48500 * 109.47516 * 329.99993 * 16 14 12 20 20 C 1.33391 * 114.92155 * 0.25138 * 4 3 2 21 21 C 1.50697 * 125.20094 * 179.75127 * 20 4 3 22 22 S 1.75881 * 109.59351 * 359.63616 * 20 4 3 23 23 H 1.08999 * 109.47394 * 89.99744 * 1 2 3 24 24 H 1.09000 * 109.47343 * 209.99649 * 1 2 3 25 25 H 1.09001 * 109.47028 * 329.99843 * 1 2 3 26 26 H 1.08001 * 122.53905 * 359.97438 * 3 2 1 27 27 H 1.09002 * 109.47152 * 140.02575 * 5 4 3 28 28 H 1.09001 * 109.46980 * 20.02675 * 5 4 3 29 29 H 1.00908 * 110.99847 * 56.05051 * 6 5 4 30 30 H 1.08995 * 109.47167 * 300.00240 * 7 6 5 31 31 H 1.09003 * 109.46442 * 60.00214 * 7 6 5 32 32 H 1.09002 * 109.47029 * 60.00405 * 9 8 7 33 33 H 1.09000 * 109.47152 * 180.02562 * 9 8 7 34 34 H 1.08993 * 109.47356 * 300.00089 * 9 8 7 35 35 H 1.09005 * 109.46874 * 60.00300 * 10 8 7 36 36 H 1.09000 * 109.47103 * 179.97438 * 10 8 7 37 37 H 1.09002 * 109.47446 * 299.99763 * 10 8 7 38 38 H 1.08995 * 109.47051 * 300.00167 * 11 8 7 39 39 H 1.09003 * 109.46901 * 60.00330 * 11 8 7 40 40 H 0.97005 * 120.00536 * 179.97438 * 15 14 12 41 41 H 1.09004 * 109.46944 * 90.00035 * 21 20 4 42 42 H 1.08997 * 109.47222 * 209.99875 * 21 20 4 43 43 H 1.09005 * 109.47162 * 330.00550 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0900 0.0000 4 6 3.6380 0.8428 0.0006 5 6 4.6623 1.9482 0.0001 6 7 5.1715 2.1434 -1.3639 7 6 6.1742 3.2163 -1.4031 8 6 6.6794 3.3900 -2.8368 9 6 7.3126 2.0823 -3.3164 10 6 5.5071 3.7539 -3.7501 11 6 7.7242 4.5070 -2.8775 12 6 8.2223 4.6777 -4.2896 13 1 7.8330 4.0517 -5.0789 14 6 9.1759 5.6321 -4.5735 15 7 9.6102 5.7815 -5.8058 16 14 9.8508 6.7133 -3.2079 17 1 11.0407 6.0620 -2.6032 18 1 10.2396 8.0328 -3.7674 19 1 8.8090 6.9046 -2.1671 20 6 3.9750 -0.4478 -0.0043 21 6 5.3860 -0.9771 -0.0102 22 16 2.5209 -1.4372 0.0005 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.8669 2.0895 -0.0004 27 1 5.4867 1.6799 0.6607 28 1 4.2009 2.8712 0.3512 29 1 4.4175 2.3299 -2.0081 30 1 5.7230 4.1479 -1.0619 31 1 7.0091 2.9570 -0.7521 32 1 6.5686 1.2863 -3.2874 33 1 7.6730 2.2062 -4.3376 34 1 8.1478 1.8230 -2.6658 35 1 5.0561 4.6856 -3.4084 36 1 5.8671 3.8781 -4.7714 37 1 4.7631 2.9579 -3.7210 38 1 7.2735 5.4386 -2.5357 39 1 8.5594 4.2472 -2.2270 40 1 10.2808 6.4533 -6.0057 41 1 5.7293 -1.1077 1.0161 42 1 5.4120 -1.9364 -0.5269 43 1 6.0372 -0.2698 -0.5238 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000557830468.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:23 Heat of formation + Delta-G solvation = 5.639155 kcal Electronic energy + Delta-G solvation = -19870.963598 eV Core-core repulsion = 17041.719702 eV Total energy + Delta-G solvation = -2829.243896 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -38.95740 -37.43734 -34.37819 -32.91515 -31.98052 -29.64788 -27.91963 -26.79699 -26.34945 -24.67284 -23.98374 -21.89067 -21.37381 -18.48451 -17.70327 -17.16902 -16.77227 -15.59755 -14.95363 -14.65772 -14.22998 -14.08967 -13.74593 -13.54204 -13.40392 -13.18295 -12.98321 -12.75404 -12.57100 -12.35984 -12.17547 -11.85990 -11.64222 -11.55179 -11.31624 -11.06270 -10.92190 -10.83720 -10.72554 -10.48479 -10.33367 -9.77265 -9.67297 -9.28939 -8.88879 -8.52735 -8.48449 -8.38994 -8.10278 -5.98626 -3.94687 0.91497 1.51372 1.89418 2.58661 3.33036 3.40667 3.44011 4.49411 4.50056 4.73257 4.85849 5.03066 5.12887 5.26792 5.28682 5.34609 5.42648 5.53803 5.56873 5.62210 5.63949 5.70885 5.72663 5.90397 6.06006 6.09603 6.17211 6.26337 6.36167 6.44288 6.51622 6.62212 6.71546 6.81777 7.09771 7.15455 7.21472 7.31721 7.35281 7.48178 7.65467 7.87066 8.61481 9.07546 9.64577 11.14548 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.033444 B = 0.003253 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.027792 B = 8606.587283 C = 8731.190276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.188 4.188 3 C -0.127 4.127 4 C -0.107 4.107 5 C 0.118 3.882 6 N -0.679 5.679 7 C 0.067 3.933 8 C -0.048 4.048 9 C -0.117 4.117 10 C -0.130 4.130 11 C -0.004 4.004 12 C -0.506 4.506 13 H 0.078 0.922 14 C 0.064 3.936 15 N -0.906 5.906 16 Si 0.876 3.124 17 H -0.278 1.278 18 H -0.290 1.290 19 H -0.267 1.267 20 C -0.147 4.147 21 C -0.086 4.086 22 S 0.077 5.923 23 H 0.073 0.927 24 H 0.065 0.935 25 H 0.074 0.926 26 H 0.135 0.865 27 H 0.077 0.923 28 H 0.033 0.967 29 H 0.341 0.659 30 H 0.023 0.977 31 H 0.066 0.934 32 H 0.045 0.955 33 H 0.059 0.941 34 H 0.038 0.962 35 H 0.039 0.961 36 H 0.069 0.931 37 H 0.036 0.964 38 H 0.012 0.988 39 H 0.010 0.990 40 H 0.261 0.739 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.812 -12.638 14.024 24.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.304 4.304 3 C -0.158 4.158 4 C -0.119 4.119 5 C -0.013 4.013 6 N -0.311 5.311 7 C -0.062 4.062 8 C -0.049 4.049 9 C -0.175 4.175 10 C -0.188 4.188 11 C -0.042 4.042 12 C -0.544 4.544 13 H 0.096 0.904 14 C -0.136 4.136 15 N -0.546 5.546 16 Si 0.703 3.297 17 H -0.204 1.204 18 H -0.216 1.216 19 H -0.192 1.192 20 C -0.265 4.265 21 C -0.145 4.145 22 S 0.342 5.658 23 H 0.091 0.909 24 H 0.084 0.916 25 H 0.093 0.907 26 H 0.152 0.848 27 H 0.095 0.905 28 H 0.051 0.949 29 H 0.161 0.839 30 H 0.041 0.959 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.088 0.912 37 H 0.054 0.946 38 H 0.030 0.970 39 H 0.028 0.972 40 H 0.071 0.929 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -15.521 -14.597 13.975 25.481 hybrid contribution 0.149 3.023 0.765 3.122 sum -15.372 -11.574 14.740 24.239 Atomic orbital electron populations 1.20296 0.88058 1.02828 1.02633 1.24284 0.99640 0.95589 1.10935 1.19961 0.92529 0.99101 1.04166 1.18713 0.94021 0.94193 1.04955 1.20529 0.94900 0.93756 0.92127 1.60582 1.17510 1.47165 1.05833 1.22155 0.94330 0.90810 0.98869 1.20411 0.95890 0.97096 0.91461 1.21610 0.98909 0.95511 1.01427 1.21776 0.96701 0.98678 1.01617 1.19629 0.93491 0.93081 0.97993 1.21143 1.21728 1.18624 0.92932 0.90428 1.25016 0.96377 0.97099 0.95120 1.69908 1.31037 1.34985 1.18656 0.86849 0.79649 0.80198 0.82960 1.20445 1.21604 1.19193 1.24252 0.98723 0.95544 1.07967 1.20405 0.90123 1.01671 1.02268 1.84135 0.97144 1.09968 1.74593 0.90870 0.91571 0.90742 0.84774 0.90468 0.94902 0.83938 0.95905 0.91565 0.93638 0.92197 0.94265 0.94200 0.91201 0.94553 0.96983 0.97176 0.92907 0.91332 0.91705 0.88617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.38 36.01 0.37 -0.22 16 2 C -0.19 -1.92 6.51 -36.00 -0.23 -2.15 16 3 C -0.13 -1.40 9.82 -41.21 -0.40 -1.81 16 4 C -0.11 -1.27 5.31 -106.25 -0.56 -1.83 16 5 C 0.12 1.43 5.19 -4.98 -0.03 1.40 16 6 N -0.68 -9.39 5.53 -115.05 -0.64 -10.03 16 7 C 0.07 1.08 4.65 -3.82 -0.02 1.06 16 8 C -0.05 -0.92 0.60 -154.51 -0.09 -1.01 16 9 C -0.12 -2.23 8.06 37.16 0.30 -1.93 16 10 C -0.13 -2.41 7.89 37.16 0.29 -2.11 16 11 C 0.00 -0.10 3.11 -27.88 -0.09 -0.18 16 12 C -0.51 -13.97 8.20 -34.44 -0.28 -14.25 16 13 H 0.08 2.29 5.92 -52.49 -0.31 1.98 16 14 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 15 N -0.91 -27.85 13.96 55.43 0.77 -27.07 16 16 Si 0.88 21.79 27.47 -169.99 -4.67 17.12 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 19 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 20 C -0.15 -1.70 6.50 -36.00 -0.23 -1.93 16 21 C -0.09 -0.89 9.85 36.00 0.35 -0.54 16 22 S 0.08 0.80 23.31 -107.50 -2.51 -1.70 16 23 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 27 H 0.08 0.92 7.79 -51.93 -0.40 0.51 16 28 H 0.03 0.39 8.09 -51.93 -0.42 -0.03 16 29 H 0.34 4.77 6.76 -39.29 -0.27 4.51 16 30 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.04 0.78 7.60 -51.93 -0.39 0.39 16 33 H 0.06 1.28 6.61 -51.93 -0.34 0.93 16 34 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 1.46 6.62 -51.93 -0.34 1.12 16 37 H 0.04 0.58 6.57 -51.93 -0.34 0.24 16 38 H 0.01 0.29 7.20 -51.93 -0.37 -0.09 16 39 H 0.01 0.24 7.57 -51.93 -0.39 -0.16 16 40 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.10 1.12 7.36 -51.93 -0.38 0.73 16 LS Contribution 350.31 15.07 5.28 5.28 Total: -1.00 -29.61 350.31 -9.85 -39.46 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -7.37 Total: 0.69 kcal Atomic # 6 Polarization: -23.02 SS G_CDS: -0.72 Total: -23.74 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: 0.14 Total: -37.10 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Atomic # 16 Polarization: 0.80 SS G_CDS: -2.51 Total: -1.70 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.61 -9.85 -39.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000557830468.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.097 kcal (2) G-P(sol) polarization free energy of solvation -29.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds