Wall clock time and date at job start Tue Mar 31 2020 05:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35895 * 117.00361 * 2 1 4 4 C 1.38710 * 120.04325 * 0.02562 * 3 2 1 5 5 C 1.38340 * 119.92341 * 179.97438 * 4 3 2 6 6 F 1.35099 * 119.99765 * 179.97438 * 5 4 3 7 7 C 1.38519 * 120.00122 * 0.02562 * 5 4 3 8 8 C 1.38205 * 120.08957 * 359.97438 * 7 5 4 9 9 C 1.50702 * 119.95962 * 180.02562 * 8 7 5 10 10 N 1.46894 * 109.46985 * 84.28763 * 9 8 7 11 11 C 1.46900 * 111.00327 * 75.93854 * 10 9 8 12 12 C 1.50698 * 109.47290 * 190.00025 * 11 10 9 13 13 H 1.07996 * 120.00239 * 359.97438 * 12 11 10 14 14 C 1.37882 * 119.99785 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00311 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99637 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.46949 * 90.00382 * 16 14 12 18 18 H 1.48505 * 109.46689 * 209.99881 * 16 14 12 19 19 H 1.48496 * 109.47481 * 329.99669 * 16 14 12 20 20 C 1.46898 * 111.00029 * 199.88951 * 10 9 8 21 21 C 1.52998 * 109.47290 * 309.19342 * 20 10 9 22 22 C 1.53000 * 109.47097 * 69.19141 * 20 10 9 23 23 C 1.38176 * 120.07649 * 359.97438 * 8 7 5 24 24 H 1.09009 * 109.46812 * 300.00091 * 1 2 3 25 25 H 1.08997 * 109.47054 * 59.99273 * 1 2 3 26 26 H 1.08995 * 109.47424 * 179.97438 * 1 2 3 27 27 H 1.08001 * 120.03778 * 0.27369 * 4 3 2 28 28 H 1.08008 * 119.95055 * 179.97438 * 7 5 4 29 29 H 1.09005 * 109.46718 * 204.28500 * 9 8 7 30 30 H 1.08996 * 109.46885 * 324.28480 * 9 8 7 31 31 H 1.09002 * 109.46809 * 310.00024 * 11 10 9 32 32 H 1.09002 * 109.47141 * 69.99511 * 11 10 9 33 33 H 0.96998 * 120.00413 * 180.02562 * 15 14 12 34 34 H 1.08996 * 109.47620 * 189.18830 * 20 10 9 35 35 H 1.08999 * 109.47258 * 59.99755 * 21 20 10 36 36 H 1.08996 * 109.47305 * 180.02562 * 21 20 10 37 37 H 1.09002 * 109.46846 * 299.99895 * 21 20 10 38 38 H 1.09002 * 109.47509 * 54.42084 * 22 20 10 39 39 H 1.08999 * 109.47191 * 174.42589 * 22 20 10 40 40 H 1.09005 * 109.47340 * 294.42473 * 22 20 10 41 41 H 1.08002 * 119.99702 * 179.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3747 0.0005 5 6 1.9222 3.6060 0.0011 6 9 1.1888 4.7406 0.0011 7 6 3.3056 3.6755 0.0005 8 6 4.0577 2.5160 0.0000 9 6 5.5626 2.5951 0.0000 10 7 6.0444 2.7578 1.3781 11 6 5.9722 1.4887 2.1144 12 6 6.2366 1.7405 3.5765 13 1 6.4384 2.7429 3.9240 14 6 6.2207 0.6910 4.4706 15 7 5.9744 -0.5297 4.0476 16 14 6.5491 1.0030 6.2829 17 1 5.2672 1.2879 6.9763 18 1 7.1814 -0.1982 6.8852 19 1 7.4598 2.1669 6.4278 20 6 7.4091 3.3010 1.3981 21 6 8.3014 2.4725 0.4717 22 6 7.3867 4.7540 0.9192 23 6 3.4313 1.2844 0.0005 24 1 -0.3633 0.5139 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 0.2129 2.3198 0.0054 28 1 3.7972 4.6373 0.0005 29 1 5.9746 1.6788 -0.4231 30 1 5.8816 3.4476 -0.5995 31 1 4.9795 1.0549 1.9941 32 1 6.7201 0.7988 1.7235 33 1 5.9628 -1.2680 4.6766 34 1 7.8020 3.2594 2.4139 35 1 7.9085 2.5142 -0.5442 36 1 9.3141 2.8753 0.4869 37 1 8.3174 1.4374 0.8129 38 1 6.6751 5.3229 1.5176 39 1 8.3809 5.1876 1.0274 40 1 7.0881 4.7867 -0.1287 41 1 4.0203 0.3791 -0.0003 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562515853.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:10 Heat of formation + Delta-G solvation = -58.321085 kcal Electronic energy + Delta-G solvation = -22518.677283 eV Core-core repulsion = 19120.446687 eV Total energy + Delta-G solvation = -3398.230596 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.69911 -39.94163 -38.20832 -36.66152 -32.76723 -31.96084 -30.08094 -29.96887 -27.45609 -26.95222 -26.60831 -24.58522 -22.48812 -21.96549 -21.23011 -18.92519 -17.70017 -16.78928 -16.21078 -15.92649 -15.79715 -15.59276 -15.24649 -15.17488 -14.65755 -14.32906 -14.09317 -13.53307 -13.07207 -12.98442 -12.66727 -12.22336 -12.18084 -11.98960 -11.91419 -11.47262 -11.36779 -11.17164 -11.08074 -10.89570 -10.73441 -10.65687 -10.62457 -10.42481 -9.99739 -9.73359 -9.14141 -8.49296 -8.39803 -7.98801 -7.22056 -5.99143 -3.99365 1.40795 1.57706 3.33395 3.33943 3.40016 3.43125 3.83068 4.43164 4.46062 4.85477 5.04190 5.06835 5.15339 5.21682 5.28986 5.36638 5.45949 5.50105 5.58345 5.68470 5.75535 5.83175 5.99427 6.03972 6.08968 6.25173 6.26605 6.31174 6.35748 6.42999 6.53148 6.77854 6.81567 6.88822 6.96488 7.36196 7.42368 7.51478 7.83166 8.13604 8.23664 8.57174 9.07548 9.63990 11.11571 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.012501 B = 0.006045 C = 0.004849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.225361 B = 4630.580610 C = 5772.465547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.310 6.310 3 C 0.154 3.846 4 C -0.254 4.254 5 C 0.128 3.872 6 F -0.143 7.143 7 C -0.168 4.168 8 C 0.008 3.992 9 C 0.086 3.914 10 N -0.524 5.524 11 C 0.187 3.813 12 C -0.505 4.505 13 H 0.062 0.938 14 C 0.056 3.944 15 N -0.897 5.897 16 Si 0.894 3.106 17 H -0.281 1.281 18 H -0.288 1.288 19 H -0.274 1.274 20 C 0.080 3.920 21 C -0.181 4.181 22 C -0.141 4.141 23 C -0.143 4.143 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.099 0.901 27 H 0.134 0.866 28 H 0.134 0.866 29 H 0.042 0.958 30 H 0.077 0.923 31 H 0.036 0.964 32 H -0.005 1.005 33 H 0.260 0.740 34 H 0.095 0.905 35 H 0.046 0.954 36 H 0.049 0.951 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.048 0.952 40 H 0.044 0.956 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.133 5.039 -10.783 13.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.223 6.223 3 C 0.108 3.892 4 C -0.274 4.274 5 C 0.109 3.891 6 F -0.122 7.122 7 C -0.187 4.187 8 C 0.007 3.993 9 C -0.042 4.042 10 N -0.247 5.247 11 C 0.063 3.937 12 C -0.543 4.543 13 H 0.080 0.920 14 C -0.145 4.145 15 N -0.536 5.536 16 Si 0.722 3.278 17 H -0.207 1.207 18 H -0.214 1.214 19 H -0.199 1.199 20 C -0.029 4.029 21 C -0.240 4.240 22 C -0.199 4.199 23 C -0.162 4.162 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.117 0.883 27 H 0.151 0.849 28 H 0.152 0.848 29 H 0.060 0.940 30 H 0.095 0.905 31 H 0.054 0.946 32 H 0.013 0.987 33 H 0.070 0.930 34 H 0.113 0.887 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.395 5.034 -10.470 13.261 hybrid contribution 0.154 -0.282 0.763 0.828 sum -6.241 4.753 -9.707 12.480 Atomic orbital electron populations 1.23051 0.78684 1.03842 1.01256 1.86131 1.21157 1.26509 1.88519 1.18622 0.91962 0.83491 0.95103 1.20972 1.00529 0.91354 1.14502 1.17289 0.89197 0.81199 1.01400 1.91463 1.77459 1.49333 1.93944 1.20819 0.91109 0.99946 1.06834 1.19475 0.96167 0.90909 0.92722 1.21058 0.89226 1.00612 0.93262 1.62336 1.20948 1.31771 1.09692 1.19846 0.97030 0.84029 0.92843 1.21137 1.47330 0.93948 0.91921 0.91988 1.24956 0.95630 0.95087 0.98825 1.69953 1.49869 0.99126 1.34682 0.86562 0.78380 0.77545 0.85301 1.20746 1.21392 1.19891 1.21622 0.88278 0.92697 1.00254 1.22456 0.99887 1.01975 0.99678 1.21875 1.00767 0.96874 1.00374 1.20461 0.91076 0.98901 1.05787 0.92574 0.92832 0.88269 0.84851 0.84816 0.93987 0.90522 0.94558 0.98729 0.93025 0.88683 0.93451 0.93225 0.91996 0.92151 0.93273 0.93654 0.84572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.28 16 2 O -0.31 -4.82 10.50 -19.41 -0.20 -5.02 16 3 C 0.15 2.55 6.69 -39.23 -0.26 2.28 16 4 C -0.25 -3.85 9.01 -39.37 -0.35 -4.21 16 5 C 0.13 2.05 7.30 -39.44 -0.29 1.76 16 6 F -0.14 -2.22 17.27 2.25 0.04 -2.18 16 7 C -0.17 -2.73 9.70 -39.49 -0.38 -3.11 16 8 C 0.01 0.14 5.03 -104.66 -0.53 -0.38 16 9 C 0.09 1.49 3.65 -4.98 -0.02 1.47 16 10 N -0.52 -10.71 4.34 -229.53 -1.00 -11.71 16 11 C 0.19 4.71 4.45 -4.98 -0.02 4.68 16 12 C -0.50 -13.96 8.32 -34.44 -0.29 -14.24 16 13 H 0.06 1.71 7.22 -52.49 -0.38 1.33 16 14 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 15 N -0.90 -26.47 13.29 55.43 0.74 -25.73 16 16 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 C 0.08 1.47 2.76 -67.72 -0.19 1.28 16 21 C -0.18 -3.00 8.49 37.16 0.32 -2.68 16 22 C -0.14 -2.10 9.11 37.16 0.34 -1.76 16 23 C -0.14 -2.55 8.35 -39.42 -0.33 -2.88 16 24 H 0.06 0.57 7.66 -51.92 -0.40 0.17 16 25 H 0.05 0.48 7.67 -51.93 -0.40 0.08 16 26 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.13 1.68 6.30 -52.49 -0.33 1.35 16 28 H 0.13 1.99 8.06 -52.48 -0.42 1.57 16 29 H 0.04 0.73 7.25 -51.93 -0.38 0.35 16 30 H 0.08 1.15 6.00 -51.93 -0.31 0.84 16 31 H 0.04 0.99 6.34 -51.93 -0.33 0.66 16 32 H -0.01 -0.13 6.57 -51.93 -0.34 -0.47 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.10 1.98 6.61 -51.93 -0.34 1.64 16 35 H 0.05 0.71 6.66 -51.93 -0.35 0.36 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 1.17 6.71 -51.93 -0.35 0.82 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.04 0.61 6.59 -51.93 -0.34 0.27 16 41 H 0.14 2.50 7.99 -52.49 -0.42 2.08 16 LS Contribution 332.86 15.07 5.02 5.02 Total: -1.00 -30.14 332.86 -7.45 -37.59 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -5.91 Total: 0.36 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: -1.11 Total: -15.03 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: -0.26 Total: -37.44 kcal Atomic # 8 Polarization: -4.82 SS G_CDS: -0.20 Total: -5.02 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.04 Total: -2.18 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.14 -7.45 -37.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562515853.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.728 kcal (2) G-P(sol) polarization free energy of solvation -30.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds