Wall clock time and date at job start Tue Mar 31 2020 05:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35902 * 116.99665 * 2 1 4 4 C 1.38739 * 120.05455 * 180.02562 * 3 2 1 5 5 C 1.38146 * 119.94476 * 179.97438 * 4 3 2 6 6 C 1.38261 * 120.05301 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.94351 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.47210 * 20.00189 * 7 6 5 9 9 C 1.53005 * 109.47148 * 260.00174 * 7 6 5 10 10 C 1.50701 * 109.47252 * 174.46339 * 9 7 6 11 11 H 1.08005 * 119.99672 * 354.73921 * 10 9 7 12 12 C 1.37875 * 120.00249 * 174.73689 * 10 9 7 13 13 N 1.31513 * 119.99713 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00171 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.46979 * 60.00253 * 14 12 10 16 16 H 1.48502 * 109.47072 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.46903 * 300.00472 * 14 12 10 18 18 N 1.46895 * 109.47572 * 140.00156 * 7 6 5 19 19 C 1.46897 * 111.00067 * 273.97560 * 18 7 6 20 20 C 1.53004 * 109.47438 * 182.51115 * 19 18 7 21 21 C 1.52999 * 109.47328 * 179.97438 * 20 19 18 22 22 F 1.39897 * 109.47076 * 180.02562 * 21 20 19 23 23 C 1.38269 * 120.11450 * 0.27600 * 6 5 4 24 24 C 1.38139 * 120.05525 * 359.45090 * 23 6 5 25 25 H 1.08996 * 109.47008 * 180.02562 * 1 2 3 26 26 H 1.09011 * 109.47207 * 299.99962 * 1 2 3 27 27 H 1.08996 * 109.47661 * 59.99735 * 1 2 3 28 28 H 1.07994 * 120.02413 * 359.95741 * 4 3 2 29 29 H 1.08000 * 119.97118 * 180.02562 * 5 4 3 30 30 H 1.08994 * 109.46872 * 294.46372 * 9 7 6 31 31 H 1.08997 * 109.46720 * 54.46948 * 9 7 6 32 32 H 0.97001 * 119.99821 * 179.97438 * 13 12 10 33 33 H 1.00900 * 111.00532 * 150.01467 * 18 7 6 34 34 H 1.09000 * 109.47311 * 302.51163 * 19 18 7 35 35 H 1.08998 * 109.47425 * 62.50817 * 19 18 7 36 36 H 1.08991 * 109.47065 * 300.00293 * 20 19 18 37 37 H 1.09003 * 109.46949 * 59.99959 * 20 19 18 38 38 H 1.09003 * 109.46966 * 300.00349 * 21 20 19 39 39 H 1.09003 * 109.46823 * 60.00268 * 21 20 19 40 40 H 1.08002 * 119.97276 * 179.70509 * 23 6 5 41 41 H 1.07994 * 120.03291 * 180.27931 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0560 2.5171 -0.0011 6 6 3.3018 3.6758 -0.0016 7 6 3.9859 5.0186 -0.0028 8 1 5.0111 4.9038 -0.3546 9 6 3.9947 5.5877 1.4175 10 6 4.7959 6.8639 1.4423 11 1 5.3233 7.1877 0.5571 12 6 4.8556 7.6181 2.5949 13 7 4.2138 7.2235 3.6729 14 14 5.8482 9.2003 2.6255 15 1 5.3120 10.1406 1.6089 16 1 5.7522 9.8189 3.9721 17 1 7.2698 8.8988 2.3199 18 7 3.2626 5.9360 -0.8933 19 6 3.7242 5.7960 -2.2808 20 6 2.9944 6.8085 -3.1658 21 6 3.4756 6.6631 -4.6109 22 9 2.8088 7.5893 -5.4199 23 6 1.9209 3.6048 0.0042 24 6 1.2914 2.3752 -0.0010 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 4.0208 0.3801 -0.0003 29 1 5.1345 2.5752 -0.0019 30 1 2.9720 5.7947 1.7323 31 1 4.4444 4.8632 2.0963 32 1 4.2561 7.7540 4.4839 33 1 3.3499 6.8904 -0.5777 34 1 4.7975 5.9803 -2.3270 35 1 3.5134 4.7865 -2.6338 36 1 1.9211 6.6243 -3.1196 37 1 3.2052 7.8180 -2.8129 38 1 4.5490 6.8476 -4.6566 39 1 3.2651 5.6536 -4.9641 40 1 1.3340 4.5114 0.0085 41 1 0.2129 2.3201 -0.0011 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562601378.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:34 Heat of formation + Delta-G solvation = -83.205218 kcal Electronic energy + Delta-G solvation = -21697.186171 eV Core-core repulsion = 18297.876518 eV Total energy + Delta-G solvation = -3399.309653 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -47.57433 -39.85265 -37.90600 -36.00581 -33.64763 -32.19952 -30.67065 -29.71852 -28.48156 -27.13895 -24.94767 -23.60112 -22.37543 -21.70762 -21.25052 -19.57788 -17.87467 -16.60989 -16.33257 -15.96612 -15.82647 -15.59288 -15.21411 -14.92559 -14.56943 -14.41336 -13.97944 -13.82155 -13.43282 -13.17401 -12.91839 -12.47610 -12.27411 -11.92483 -11.74948 -11.44244 -11.41808 -11.13072 -11.03700 -10.96217 -10.69469 -10.59149 -10.49434 -10.47046 -10.28223 -9.50655 -9.21636 -8.59069 -8.45011 -7.81846 -7.62391 -6.08188 -4.12906 1.75330 1.87661 3.27241 3.33084 3.34236 3.44529 4.18037 4.38137 4.46362 4.80867 4.95088 5.02731 5.15265 5.15869 5.18694 5.20895 5.29195 5.36472 5.44314 5.48365 5.62630 5.80030 5.80705 5.86100 5.88176 6.06861 6.15055 6.29514 6.32220 6.48447 6.61949 6.71787 6.81037 7.12505 7.17295 7.42763 7.56867 7.66838 7.89032 7.95722 8.15867 8.27702 8.93073 9.51918 11.02106 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.009337 B = 0.005616 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2998.151111 B = 4984.678531 C = 7462.235818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.325 6.325 3 C 0.106 3.894 4 C -0.156 4.156 5 C -0.085 4.085 6 C -0.088 4.088 7 C 0.131 3.869 8 H 0.041 0.959 9 C 0.028 3.972 10 C -0.528 4.528 11 H 0.052 0.948 12 C 0.064 3.936 13 N -0.888 5.888 14 Si 0.890 3.110 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.278 1.278 18 N -0.680 5.680 19 C 0.063 3.937 20 C -0.151 4.151 21 C 0.063 3.937 22 F -0.223 7.223 23 C -0.049 4.049 24 C -0.213 4.213 25 H 0.093 0.907 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.122 0.878 29 H 0.123 0.877 30 H 0.032 0.968 31 H 0.020 0.980 32 H 0.262 0.738 33 H 0.359 0.641 34 H 0.027 0.973 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.132 0.868 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.702 -8.916 -11.184 15.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.239 6.239 3 C 0.062 3.938 4 C -0.175 4.175 5 C -0.104 4.104 6 C -0.089 4.089 7 C 0.022 3.978 8 H 0.059 0.941 9 C -0.010 4.010 10 C -0.567 4.567 11 H 0.070 0.930 12 C -0.139 4.139 13 N -0.526 5.526 14 Si 0.718 3.282 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.203 1.203 18 N -0.314 5.314 19 C -0.067 4.067 20 C -0.190 4.190 21 C 0.007 3.993 22 F -0.204 7.204 23 C -0.067 4.067 24 C -0.232 4.232 25 H 0.112 0.888 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.140 0.860 29 H 0.141 0.859 30 H 0.050 0.950 31 H 0.038 0.962 32 H 0.072 0.928 33 H 0.181 0.819 34 H 0.045 0.955 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.150 0.850 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.207 -9.440 -11.081 15.460 hybrid contribution 1.135 1.453 0.218 1.857 sum -4.071 -7.987 -10.863 14.085 Atomic orbital electron populations 1.22959 0.79052 1.03232 1.01283 1.86009 1.20878 1.27572 1.89414 1.18963 0.92328 0.83802 0.98746 1.20254 0.91187 0.98224 1.07792 1.20858 0.99693 0.91164 0.98662 1.20121 0.93844 0.95170 0.99737 1.20572 0.92655 0.88116 0.96451 0.94128 1.19271 0.98321 0.95198 0.88183 1.21090 1.30985 1.07200 0.97392 0.92981 1.24971 0.95453 0.97775 0.95658 1.69951 1.41992 1.38793 1.01875 0.86691 0.80642 0.83636 0.77232 1.20167 1.21241 1.20326 1.60430 1.58520 1.12294 1.00167 1.21795 0.96213 0.98394 0.90303 1.22144 1.02387 1.01192 0.93230 1.21966 0.96477 0.91128 0.89686 1.92746 1.83224 1.69227 1.75225 1.20846 0.94447 0.96597 0.94815 1.21217 0.99470 0.92610 1.09860 0.88810 0.92805 0.92950 0.86003 0.85876 0.94991 0.96165 0.92786 0.81910 0.95474 0.91634 0.90129 0.90795 0.90993 0.90925 0.85038 0.86217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.32 -4.56 10.50 -19.43 -0.20 -4.77 16 3 C 0.11 1.65 6.69 -39.21 -0.26 1.38 16 4 C -0.16 -2.42 9.99 -39.43 -0.39 -2.82 16 5 C -0.09 -1.40 9.66 -39.61 -0.38 -1.79 16 6 C -0.09 -1.58 4.79 -104.60 -0.50 -2.08 16 7 C 0.13 2.57 2.19 -68.86 -0.15 2.42 16 8 H 0.04 0.80 7.60 -51.93 -0.39 0.41 16 9 C 0.03 0.67 4.53 -27.88 -0.13 0.54 16 10 C -0.53 -13.84 8.05 -34.44 -0.28 -14.12 16 11 H 0.05 1.32 7.68 -52.48 -0.40 0.91 16 12 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 13 N -0.89 -25.70 13.29 55.43 0.74 -24.97 16 14 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 15 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 16 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 18 N -0.68 -11.98 5.57 -107.95 -0.60 -12.58 16 19 C 0.06 0.91 5.51 -3.82 -0.02 0.89 16 20 C -0.15 -1.92 5.90 -26.73 -0.16 -2.08 16 21 C 0.06 0.69 7.55 37.16 0.28 0.97 16 22 F -0.22 -2.98 17.36 2.25 0.04 -2.95 16 23 C -0.05 -0.84 9.31 -39.61 -0.37 -1.20 16 24 C -0.21 -3.27 9.04 -39.43 -0.36 -3.62 16 25 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.51 7.66 -51.92 -0.40 0.11 16 27 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 28 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 29 H 0.12 1.85 8.03 -52.49 -0.42 1.43 16 30 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.26 7.23 8.31 -40.82 -0.34 6.90 16 33 H 0.36 6.92 7.31 -39.29 -0.29 6.63 16 34 H 0.03 0.39 7.99 -51.93 -0.42 -0.02 16 35 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 36 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.13 2.29 7.72 -52.49 -0.41 1.88 16 41 H 0.12 1.55 6.30 -52.49 -0.33 1.21 16 LS Contribution 345.46 15.07 5.21 5.21 Total: -1.00 -29.24 345.46 -8.06 -37.30 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -6.39 Total: 5.54 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: -1.82 Total: -18.57 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.13 Total: -37.55 kcal Atomic # 8 Polarization: -4.56 SS G_CDS: -0.20 Total: -4.77 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.04 Total: -2.95 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.24 -8.06 -37.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562601378.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.907 kcal (2) G-P(sol) polarization free energy of solvation -29.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds