Wall clock time and date at job start Tue Mar 31 2020 05:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35907 * 116.99602 * 2 1 4 4 C 1.38730 * 120.04924 * 179.97438 * 3 2 1 5 5 C 1.38152 * 119.93885 * 179.97438 * 4 3 2 6 6 C 1.38261 * 120.05745 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.94651 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.46777 * 340.00131 * 7 6 5 9 9 C 1.53002 * 109.46883 * 99.99905 * 7 6 5 10 10 C 1.50697 * 109.46986 * 294.28506 * 9 7 6 11 11 H 1.07994 * 120.00465 * 357.91298 * 10 9 7 12 12 C 1.37881 * 119.99803 * 177.90958 * 10 9 7 13 13 N 1.31512 * 119.99870 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 119.99947 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.47298 * 89.99860 * 14 12 10 16 16 H 1.48506 * 109.46873 * 209.99928 * 14 12 10 17 17 H 1.48494 * 109.46750 * 329.99613 * 14 12 10 18 18 N 1.46904 * 109.47380 * 220.00034 * 7 6 5 19 19 C 1.46898 * 110.99775 * 153.54183 * 18 7 6 20 20 C 1.53003 * 109.46648 * 185.23445 * 19 18 7 21 21 C 1.52996 * 109.46993 * 179.97438 * 20 19 18 22 22 F 1.39899 * 109.47094 * 180.02562 * 21 20 19 23 23 C 1.38266 * 120.11178 * 359.97438 * 6 5 4 24 24 C 1.38148 * 120.05458 * 359.97438 * 23 6 5 25 25 H 1.09003 * 109.46710 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46689 * 299.98913 * 1 2 3 27 27 H 1.08997 * 109.47145 * 59.99449 * 1 2 3 28 28 H 1.07998 * 120.03240 * 359.96287 * 4 3 2 29 29 H 1.08001 * 119.96760 * 179.72392 * 5 4 3 30 30 H 1.08993 * 109.47227 * 54.29250 * 9 7 6 31 31 H 1.09001 * 109.46742 * 174.29110 * 9 7 6 32 32 H 0.97003 * 120.00049 * 180.02562 * 13 12 10 33 33 H 1.00898 * 110.99783 * 277.49728 * 18 7 6 34 34 H 1.08996 * 109.47489 * 305.22946 * 19 18 7 35 35 H 1.08998 * 109.47078 * 65.23790 * 19 18 7 36 36 H 1.08998 * 109.47464 * 300.00192 * 20 19 18 37 37 H 1.09004 * 109.46808 * 60.00062 * 20 19 18 38 38 H 1.09004 * 109.47377 * 299.99998 * 21 20 19 39 39 H 1.09004 * 109.47186 * 60.00424 * 21 20 19 40 40 H 1.08003 * 119.97366 * 180.02562 * 23 6 5 41 41 H 1.08005 * 120.02727 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4313 1.2849 0.0005 5 6 4.0561 2.5171 0.0000 6 6 3.3019 3.6759 -0.0005 7 6 3.9860 5.0186 -0.0005 8 1 5.0112 4.9040 0.3514 9 6 3.9948 5.5864 -1.4213 10 6 4.8541 4.7182 -2.3038 11 1 5.3719 3.8679 -1.8853 12 6 4.9792 5.0095 -3.6457 13 7 5.7287 4.2516 -4.4160 14 14 4.0842 6.4807 -4.3695 15 1 4.9537 7.6813 -4.2821 16 1 3.7561 6.2096 -5.7922 17 1 2.8311 6.7206 -3.6096 18 7 3.2626 5.9368 0.8893 19 6 4.1581 6.9766 1.4134 20 6 3.4041 7.8322 2.4334 21 6 4.3369 8.9148 2.9798 22 9 3.6477 9.6967 3.9130 23 6 1.9211 3.6048 -0.0011 24 6 1.2915 2.3751 -0.0016 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 4.0209 0.3800 0.0016 29 1 5.1345 2.5751 0.0049 30 1 2.9772 5.6062 -1.8110 31 1 4.3975 6.5992 -1.4052 32 1 5.8171 4.4567 -5.3599 33 1 2.4693 6.3462 0.4189 34 1 5.0160 6.5081 1.8956 35 1 4.5017 7.6073 0.5934 36 1 2.5461 8.3007 1.9513 37 1 3.0605 7.2015 3.2534 38 1 5.1946 8.4459 3.4621 39 1 4.6809 9.5456 2.1601 40 1 1.3341 4.5114 -0.0019 41 1 0.2129 2.3201 -0.0024 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562601389.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:36 Heat of formation + Delta-G solvation = -77.051760 kcal Electronic energy + Delta-G solvation = -21747.089896 eV Core-core repulsion = 18348.047078 eV Total energy + Delta-G solvation = -3399.042819 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -47.65859 -39.74330 -37.96885 -36.13747 -33.64890 -32.26547 -30.55807 -29.86644 -28.73874 -27.10391 -25.17350 -23.40582 -22.29926 -21.69942 -21.27171 -19.71021 -17.79813 -16.86958 -16.49077 -16.18348 -15.67994 -15.47464 -15.35765 -15.02088 -14.71422 -14.18456 -14.01505 -13.73642 -13.27207 -13.21798 -12.81456 -12.58915 -12.40289 -12.21891 -11.88652 -11.66986 -11.49653 -11.29982 -11.12532 -10.89830 -10.83358 -10.66729 -10.39028 -10.30381 -10.02672 -9.86414 -9.27936 -8.60277 -8.40862 -8.01471 -7.47068 -6.08691 -4.06710 1.92945 2.02355 3.23562 3.32635 3.33298 3.57810 4.17668 4.38784 4.41179 4.70919 4.86929 5.06061 5.07817 5.11858 5.24075 5.24708 5.29824 5.34361 5.39115 5.52840 5.62974 5.67696 5.74711 5.88301 5.98139 6.00893 6.09860 6.17597 6.22146 6.38715 6.57503 6.72641 6.81278 6.98116 7.08481 7.20708 7.31358 7.47686 7.69167 7.78726 7.81045 8.46913 8.96191 9.53063 11.04334 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.009070 B = 0.006014 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3086.375124 B = 4654.509738 C = 7054.525194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.324 6.324 3 C 0.106 3.894 4 C -0.150 4.150 5 C -0.061 4.061 6 C -0.060 4.060 7 C 0.135 3.865 8 H 0.080 0.920 9 C -0.033 4.033 10 C -0.513 4.513 11 H 0.078 0.922 12 C 0.069 3.931 13 N -0.899 5.899 14 Si 0.875 3.125 15 H -0.279 1.279 16 H -0.288 1.288 17 H -0.268 1.268 18 N -0.688 5.688 19 C 0.061 3.939 20 C -0.149 4.149 21 C 0.061 3.939 22 F -0.223 7.223 23 C -0.067 4.067 24 C -0.211 4.211 25 H 0.093 0.907 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.123 0.877 29 H 0.126 0.874 30 H 0.020 0.980 31 H 0.012 0.988 32 H 0.263 0.737 33 H 0.336 0.664 34 H 0.073 0.927 35 H 0.036 0.964 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.116 0.884 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.538 0.887 12.021 14.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.238 6.238 3 C 0.062 3.938 4 C -0.169 4.169 5 C -0.079 4.079 6 C -0.061 4.061 7 C 0.027 3.973 8 H 0.098 0.902 9 C -0.072 4.072 10 C -0.551 4.551 11 H 0.096 0.904 12 C -0.132 4.132 13 N -0.538 5.538 14 Si 0.702 3.298 15 H -0.205 1.205 16 H -0.214 1.214 17 H -0.192 1.192 18 N -0.317 5.317 19 C -0.069 4.069 20 C -0.187 4.187 21 C 0.006 3.994 22 F -0.204 7.204 23 C -0.086 4.086 24 C -0.230 4.230 25 H 0.111 0.889 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.141 0.859 29 H 0.144 0.856 30 H 0.038 0.962 31 H 0.030 0.970 32 H 0.073 0.927 33 H 0.154 0.846 34 H 0.092 0.908 35 H 0.054 0.946 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.134 0.866 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.338 0.287 12.419 14.428 hybrid contribution -0.619 1.484 -1.541 2.227 sum -7.957 1.771 10.878 13.594 Atomic orbital electron populations 1.22938 0.79292 1.03124 1.01106 1.86020 1.20681 1.27638 1.89485 1.18908 0.92324 0.83666 0.98920 1.20286 0.91118 0.98411 1.07102 1.20777 0.99824 0.90822 0.96520 1.19528 0.93090 0.94500 0.99000 1.20468 0.95700 0.88735 0.92423 0.90187 1.20210 0.97772 0.96313 0.92870 1.20987 1.28204 1.13046 0.92869 0.90387 1.24989 0.94866 0.96173 0.97175 1.69898 1.39306 1.38693 1.05880 0.86870 0.80804 0.83538 0.78565 1.20453 1.21353 1.19248 1.60659 1.10503 1.19280 1.41299 1.21791 0.95768 0.92962 0.96338 1.22122 0.99079 0.97065 1.00438 1.21974 0.94690 0.92202 0.90552 1.92748 1.82192 1.76983 1.68485 1.20567 0.94235 0.96243 0.97513 1.21041 0.99162 0.92567 1.10233 0.88902 0.93072 0.92934 0.85944 0.85610 0.96196 0.97033 0.92747 0.84641 0.90809 0.94613 0.91112 0.90090 0.90685 0.90833 0.86584 0.86443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.33 16 2 O -0.32 -5.05 10.50 -19.45 -0.20 -5.25 16 3 C 0.11 1.82 6.69 -39.22 -0.26 1.56 16 4 C -0.15 -2.68 9.99 -39.43 -0.39 -3.07 16 5 C -0.06 -1.14 8.75 -39.60 -0.35 -1.49 16 6 C -0.06 -1.13 4.50 -104.60 -0.47 -1.60 16 7 C 0.14 2.50 2.21 -68.86 -0.15 2.35 16 8 H 0.08 1.51 7.55 -51.93 -0.39 1.12 16 9 C -0.03 -0.73 3.49 -27.88 -0.10 -0.83 16 10 C -0.51 -13.76 9.12 -34.44 -0.31 -14.08 16 11 H 0.08 2.23 6.90 -52.49 -0.36 1.87 16 12 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 13 N -0.90 -27.10 13.96 55.43 0.77 -26.33 16 14 Si 0.87 21.24 27.51 -169.99 -4.68 16.56 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 17 H -0.27 -6.24 6.48 56.52 0.37 -5.87 16 18 N -0.69 -10.44 5.65 -107.95 -0.61 -11.05 16 19 C 0.06 0.79 5.51 -3.82 -0.02 0.77 16 20 C -0.15 -1.63 5.97 -26.73 -0.16 -1.79 16 21 C 0.06 0.61 7.55 37.16 0.28 0.89 16 22 F -0.22 -2.74 17.36 2.25 0.04 -2.70 16 23 C -0.07 -1.17 9.31 -39.60 -0.37 -1.53 16 24 C -0.21 -3.45 9.04 -39.43 -0.36 -3.80 16 25 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.50 7.67 -51.93 -0.40 0.10 16 27 H 0.05 0.55 7.66 -51.93 -0.40 0.16 16 28 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 29 H 0.13 2.28 7.83 -52.49 -0.41 1.87 16 30 H 0.02 0.45 7.05 -51.93 -0.37 0.09 16 31 H 0.01 0.25 7.07 -51.93 -0.37 -0.11 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.34 4.93 7.93 -39.29 -0.31 4.62 16 34 H 0.07 0.93 7.92 -51.93 -0.41 0.52 16 35 H 0.04 0.49 7.57 -51.93 -0.39 0.09 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.12 1.83 7.29 -52.48 -0.38 1.44 16 41 H 0.12 1.59 6.30 -52.48 -0.33 1.26 16 LS Contribution 338.88 15.07 5.11 5.11 Total: -1.00 -30.90 338.88 -7.57 -38.47 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -6.23 Total: 4.62 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: -1.77 Total: -19.43 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.16 Total: -37.38 kcal Atomic # 8 Polarization: -5.05 SS G_CDS: -0.20 Total: -5.25 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.04 Total: -2.70 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.68 Total: 16.56 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.90 -7.57 -38.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562601389.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.581 kcal (2) G-P(sol) polarization free energy of solvation -30.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds