Wall clock time and date at job start Tue Mar 31 2020 05:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46938 * 2 1 4 4 H 1.08999 * 109.46596 * 305.84800 * 3 2 1 5 5 C 1.50699 * 109.46867 * 185.84660 * 3 2 1 6 6 H 1.08004 * 119.99590 * 243.39863 * 5 3 2 7 7 C 1.37871 * 120.00250 * 63.40746 * 5 3 2 8 8 N 1.31516 * 120.00182 * 196.03891 * 7 5 3 9 9 Si 1.86803 * 120.00181 * 16.03863 * 7 5 3 10 10 H 1.48493 * 109.47446 * 92.73678 * 9 7 5 11 11 H 1.48492 * 109.47243 * 212.74156 * 9 7 5 12 12 H 1.48507 * 109.46887 * 332.74154 * 9 7 5 13 13 N 1.46899 * 109.47340 * 65.84349 * 3 2 1 14 14 C 1.46896 * 111.00171 * 258.59873 * 13 3 2 15 15 C 1.52998 * 109.47281 * 175.30184 * 14 13 3 16 16 C 1.53000 * 109.47269 * 180.02562 * 15 14 13 17 17 O 1.42901 * 109.47179 * 180.02562 * 16 15 14 18 18 C 1.35943 * 117.00063 * 179.97438 * 17 16 15 19 19 C 1.38715 * 120.03117 * 359.72423 * 18 17 16 20 20 C 1.38142 * 119.96844 * 179.79000 * 19 18 17 21 21 C 1.38455 * 120.03318 * 0.48840 * 20 19 18 22 22 F 1.35099 * 119.97013 * 179.73036 * 21 20 19 23 23 C 1.38455 * 120.05927 * 359.74005 * 21 20 19 24 24 C 1.38146 * 120.02946 * 0.03029 * 23 21 20 25 25 H 1.08999 * 109.46666 * 175.85996 * 1 2 3 26 26 H 1.09007 * 109.47125 * 295.85621 * 1 2 3 27 27 H 1.08998 * 109.47051 * 55.85828 * 1 2 3 28 28 H 1.08996 * 109.47304 * 239.99950 * 2 1 3 29 29 H 1.09005 * 109.47164 * 119.99266 * 2 1 3 30 30 H 0.96998 * 120.00150 * 179.97438 * 8 7 5 31 31 H 1.00897 * 110.99899 * 134.64025 * 13 3 2 32 32 H 1.09000 * 109.47215 * 295.30329 * 14 13 3 33 33 H 1.08999 * 109.47381 * 55.30401 * 14 13 3 34 34 H 1.09000 * 109.47115 * 300.00206 * 15 14 13 35 35 H 1.08998 * 109.47223 * 60.00028 * 15 14 13 36 36 H 1.09000 * 109.46958 * 299.99638 * 16 15 14 37 37 H 1.08999 * 109.47404 * 60.00209 * 16 15 14 38 38 H 1.07995 * 120.01061 * 0.02562 * 19 18 17 39 39 H 1.08002 * 119.98192 * 180.21110 * 20 19 18 40 40 H 1.08001 * 119.98211 * 180.02562 * 23 21 20 41 41 H 1.08006 * 120.01564 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5936 1.9857 -0.8330 5 6 3.5400 1.4450 -0.1447 6 1 4.1585 1.8361 0.6496 7 6 4.1228 0.9482 -1.2912 8 7 5.4048 0.6551 -1.3033 9 14 3.0915 0.6915 -2.8275 10 1 3.1661 1.9036 -3.6821 11 1 3.6092 -0.4784 -3.5814 12 1 1.6792 0.4452 -2.4401 13 7 1.6688 2.0932 1.2637 14 6 0.4994 2.9639 1.0840 15 6 0.0723 3.5305 2.4395 16 6 -1.1461 4.4368 2.2524 17 8 -1.5446 4.9665 3.5183 18 6 -2.6201 5.7980 3.5285 19 6 -3.2740 6.1018 2.3435 20 6 -4.3693 6.9435 2.3559 21 6 -4.8084 7.4917 3.5491 22 9 -5.8765 8.3190 3.5590 23 6 -4.1538 7.1931 4.7320 24 6 -3.0611 6.3480 4.7231 25 1 -0.3632 -1.0250 -0.0742 26 1 -0.3634 0.4482 0.9248 27 1 -0.3633 0.5768 -0.8505 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 5.8147 0.3052 -2.1098 31 1 2.4472 2.6078 1.6477 32 1 0.7561 3.7830 0.4123 33 1 -0.3208 2.3871 0.6566 34 1 -0.1844 2.7113 3.1111 35 1 0.8925 4.1073 2.8669 36 1 -0.8897 5.2561 1.5806 37 1 -1.9661 3.8596 1.8252 38 1 -2.9291 5.6775 1.4122 39 1 -4.8807 7.1774 1.4339 40 1 -4.4977 7.6212 5.6620 41 1 -2.5503 6.1155 5.6460 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568181182.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:41 Heat of formation + Delta-G solvation = -68.191359 kcal Electronic energy + Delta-G solvation = -21007.693249 eV Core-core repulsion = 17609.034646 eV Total energy + Delta-G solvation = -3398.658603 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.08258 -40.34091 -37.69596 -36.76468 -33.69937 -32.01254 -31.57260 -30.58451 -29.35171 -27.33898 -24.79658 -23.28639 -22.55798 -22.11476 -21.13368 -19.61001 -18.56128 -17.62007 -16.92715 -16.83529 -16.47730 -15.79015 -15.41545 -15.04478 -14.72937 -14.26821 -14.01450 -13.90087 -13.44709 -13.26170 -13.03009 -12.88239 -12.78364 -12.38121 -12.12589 -11.90773 -11.60156 -11.50546 -11.18766 -10.99585 -10.84948 -10.69437 -10.52019 -10.25334 -9.87525 -9.53175 -9.40836 -9.19357 -8.48189 -8.37729 -7.52229 -6.18486 -4.13929 0.81942 0.91281 2.91430 3.22814 3.25602 3.33124 3.35832 4.00955 4.34869 4.35644 4.44138 4.76792 4.78529 4.85314 4.95809 5.11480 5.15111 5.20508 5.42212 5.50043 5.55250 5.71680 5.79505 5.81319 5.86664 5.95785 6.02491 6.03201 6.21566 6.26455 6.31589 6.41961 6.63150 6.72673 6.98568 7.01250 7.13437 7.40782 7.60160 7.92089 8.28898 8.54931 8.90049 9.47484 10.94320 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.034186 B = 0.002608 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.850105 B =10733.842450 C =10916.596126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C 0.192 3.808 4 H 0.004 0.996 5 C -0.536 4.536 6 H 0.076 0.924 7 C 0.078 3.922 8 N -0.888 5.888 9 Si 0.864 3.136 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.250 1.250 13 N -0.679 5.679 14 C 0.059 3.941 15 C -0.115 4.115 16 C 0.059 3.941 17 O -0.309 6.309 18 C 0.129 3.871 19 C -0.183 4.183 20 C -0.111 4.111 21 C 0.051 3.949 22 F -0.144 7.144 23 C -0.113 4.113 24 C -0.127 4.127 25 H 0.035 0.965 26 H 0.055 0.945 27 H 0.036 0.964 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.264 0.736 31 H 0.340 0.660 32 H 0.023 0.977 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.141 0.859 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.093 11.019 8.313 23.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.147 4.147 3 C 0.084 3.916 4 H 0.021 0.979 5 C -0.574 4.574 6 H 0.094 0.906 7 C -0.125 4.125 8 N -0.525 5.525 9 Si 0.690 3.310 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.174 1.174 13 N -0.311 5.311 14 C -0.071 4.071 15 C -0.153 4.153 16 C -0.016 4.016 17 O -0.223 6.223 18 C 0.082 3.918 19 C -0.202 4.202 20 C -0.130 4.130 21 C 0.032 3.968 22 F -0.122 7.122 23 C -0.132 4.132 24 C -0.146 4.146 25 H 0.054 0.946 26 H 0.074 0.926 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.159 0.841 32 H 0.041 0.959 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.157 0.843 39 H 0.155 0.845 40 H 0.159 0.841 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -19.205 10.356 8.571 23.442 hybrid contribution -0.236 0.735 -1.739 1.903 sum -19.441 11.091 6.831 23.402 Atomic orbital electron populations 1.21881 0.98694 0.99520 1.00518 1.21861 0.92658 0.99347 1.00874 1.19451 0.95491 0.90794 0.85901 0.97863 1.21226 0.89452 1.42694 1.04026 0.90625 1.24903 0.94778 0.94005 0.98823 1.69989 1.11712 1.42375 1.28432 0.87192 0.82352 0.77846 0.83582 1.20845 1.21258 1.17423 1.60501 1.07758 1.33051 1.29771 1.21905 0.95990 0.95250 0.93934 1.21527 0.95496 0.98597 0.99656 1.22938 0.98146 0.97140 0.83389 1.86114 1.43293 1.59048 1.33800 1.19091 0.87738 0.91031 0.93894 1.21206 0.98186 1.02578 0.98200 1.20952 0.97188 0.97527 0.97353 1.17575 0.88394 0.95999 0.94818 1.91484 1.53526 1.69877 1.97360 1.20952 0.95799 0.98918 0.97520 1.20320 0.97866 0.99264 0.97125 0.94608 0.92626 0.94451 0.93178 0.92199 0.92592 0.84129 0.95876 0.91220 0.90083 0.90950 0.91891 0.91781 0.84278 0.84517 0.84137 0.84053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 8.74 37.16 0.32 -2.31 16 2 C -0.11 -2.34 4.85 -26.73 -0.13 -2.47 16 3 C 0.19 4.34 1.75 -68.86 -0.12 4.22 16 4 H 0.00 0.09 6.35 -51.93 -0.33 -0.24 16 5 C -0.54 -14.48 9.03 -34.44 -0.31 -14.79 16 6 H 0.08 2.21 7.67 -52.48 -0.40 1.80 16 7 C 0.08 2.19 5.31 -17.82 -0.09 2.10 16 8 N -0.89 -26.47 13.96 55.43 0.77 -25.70 16 9 Si 0.86 20.68 25.76 -169.99 -4.38 16.30 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.25 -5.63 5.49 56.52 0.31 -5.32 16 13 N -0.68 -13.02 6.09 -107.95 -0.66 -13.68 16 14 C 0.06 0.91 5.03 -3.83 -0.02 0.89 16 15 C -0.11 -1.45 5.88 -26.73 -0.16 -1.61 16 16 C 0.06 0.64 4.74 37.16 0.18 0.81 16 17 O -0.31 -3.62 10.14 -19.56 -0.20 -3.81 16 18 C 0.13 1.36 6.69 -39.23 -0.26 1.09 16 19 C -0.18 -1.72 9.04 -39.44 -0.36 -2.08 16 20 C -0.11 -1.00 10.02 -39.54 -0.40 -1.40 16 21 C 0.05 0.49 7.30 -39.42 -0.29 0.21 16 22 F -0.14 -1.48 17.27 2.25 0.04 -1.44 16 23 C -0.11 -0.97 10.02 -39.53 -0.40 -1.36 16 24 C -0.13 -1.17 9.98 -39.44 -0.39 -1.56 16 25 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.92 6.65 -51.93 -0.35 0.58 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 1.14 4.88 -51.93 -0.25 0.88 16 29 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 31 H 0.34 6.64 7.96 -39.29 -0.31 6.33 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 1.04 6.01 -51.93 -0.31 0.73 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.06 0.62 7.65 -51.93 -0.40 0.22 16 37 H 0.06 0.62 7.67 -51.93 -0.40 0.22 16 38 H 0.14 1.12 6.30 -52.49 -0.33 0.79 16 39 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 40 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 41 H 0.14 1.09 8.06 -52.48 -0.42 0.66 16 LS Contribution 333.78 15.07 5.03 5.03 Total: -1.00 -29.40 333.78 -7.93 -37.33 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -6.11 Total: 4.24 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: -2.42 Total: -18.27 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 0.12 Total: -39.38 kcal Atomic # 8 Polarization: -3.62 SS G_CDS: -0.20 Total: -3.81 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.38 Total: 16.30 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.40 -7.93 -37.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568181182.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.866 kcal (2) G-P(sol) polarization free energy of solvation -29.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds